Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|093450
Gene name
Locationscaffold_6:1339293..1342506
Strand+
Gene length (bp)3213
Transcript length (bp)2586
Coding sequence length (bp)2586
Protein length (aa) 862

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01602 Adaptin_N Adaptin N terminal region 1.1E-142 22 575
PF02883 Alpha_adaptinC2 Adaptin C-terminal domain 6.0E-21 746 854
PF12717 Cnd1 non-SMC mitotic condensation complex subunit 1 1.3E-07 119 273

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5 6 854 0.0E+00
sp|Q99128|AP1G1_USTMA AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=APL4 PE=3 SV=3 3 851 0.0E+00
sp|O75843|AP1G2_HUMAN AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1 1 588 0.0E+00
sp|O88512|AP1G2_MOUSE AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=1 SV=2 1 588 0.0E+00
sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1 2 857 0.0E+00
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5 6 854 0.0E+00
sp|Q99128|AP1G1_USTMA AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=APL4 PE=3 SV=3 3 851 0.0E+00
sp|O75843|AP1G2_HUMAN AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1 1 588 0.0E+00
sp|O88512|AP1G2_MOUSE AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=1 SV=2 1 588 0.0E+00
sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1 2 857 0.0E+00
sp|Q9UU81|AP1G1_SCHPO AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl4 PE=3 SV=1 6 857 0.0E+00
sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1 6 605 0.0E+00
sp|Q5R5M2|AP1G1_PONAB AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1 6 854 0.0E+00
sp|P22892|AP1G1_MOUSE AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3 6 854 0.0E+00
sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=1 SV=2 6 857 0.0E+00
sp|Q12028|AP1G1_YEAST AP-1 complex subunit gamma-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL4 PE=1 SV=1 6 648 5.0E-98
sp|P17427|AP2A2_MOUSE AP-2 complex subunit alpha-2 OS=Mus musculus GN=Ap2a2 PE=1 SV=2 6 604 9.0E-87
sp|P18484|AP2A2_RAT AP-2 complex subunit alpha-2 OS=Rattus norvegicus GN=Ap2a2 PE=1 SV=3 6 604 1.0E-86
sp|Q0VCK5|AP2A2_BOVIN AP-2 complex subunit alpha-2 OS=Bos taurus GN=AP2A2 PE=1 SV=1 6 604 8.0E-86
sp|O94973|AP2A2_HUMAN AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP2A2 PE=1 SV=2 6 604 8.0E-86
sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR PE=1 SV=1 6 597 2.0E-85
sp|Q8LPK4|AP2A2_ARATH AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana GN=ALPHAC-AD PE=1 SV=1 6 597 4.0E-85
sp|Q29N38|AP2A_DROPS AP-2 complex subunit alpha OS=Drosophila pseudoobscura pseudoobscura GN=alpha-Adaptin PE=3 SV=1 6 683 6.0E-84
sp|Q7QG73|AP2A_ANOGA AP-2 complex subunit alpha OS=Anopheles gambiae GN=alpha-Adaptin PE=3 SV=4 6 674 1.0E-83
sp|P17426|AP2A1_MOUSE AP-2 complex subunit alpha-1 OS=Mus musculus GN=Ap2a1 PE=1 SV=1 6 704 3.0E-83
sp|O95782|AP2A1_HUMAN AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP2A1 PE=1 SV=3 6 608 2.0E-82
sp|P91926|AP2A_DROME AP-2 complex subunit alpha OS=Drosophila melanogaster GN=AP-2alpha PE=1 SV=1 6 677 1.0E-81
sp|Q86KI1|AP2A2_DICDI AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1 PE=3 SV=1 6 588 1.0E-79
sp|Q8L7A9|AP4E_ARATH AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730 PE=1 SV=1 9 576 3.0E-63
sp|Q9C0W7|AP2A_SCHPO AP-2 complex subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl3 PE=3 SV=1 6 589 1.0E-62
sp|Q80V94|AP4E1_MOUSE AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=1 SV=3 3 585 2.0E-60
sp|Q9UPM8|AP4E1_HUMAN AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2 6 584 1.0E-57
sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila melanogaster GN=g PE=1 SV=4 5 483 3.0E-48
sp|Q865S1|AP3D1_BOVIN AP-3 complex subunit delta-1 OS=Bos taurus GN=AP3D1 PE=1 SV=2 5 567 1.0E-45
sp|O54774|AP3D1_MOUSE AP-3 complex subunit delta-1 OS=Mus musculus GN=Ap3d1 PE=1 SV=1 5 567 2.0E-45
sp|O14617|AP3D1_HUMAN AP-3 complex subunit delta-1 OS=Homo sapiens GN=AP3D1 PE=1 SV=1 5 486 5.0E-45
sp|Q54WN0|AP3D_DICDI AP-3 complex subunit delta OS=Dictyostelium discoideum GN=ap3d1 PE=3 SV=1 9 483 1.0E-40
sp|Q54VE0|AP4E_DICDI AP-4 complex subunit epsilon OS=Dictyostelium discoideum GN=ap4e1 PE=3 SV=1 9 427 1.0E-38
sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl5 PE=3 SV=2 9 575 4.0E-33
sp|Q08951|AP3D_YEAST AP-3 complex subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL5 PE=1 SV=1 6 577 1.0E-31
sp|Q755A1|AP3D_ASHGO AP-3 complex subunit delta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL5 PE=3 SV=1 5 588 1.0E-31
sp|Q9C744|AP3D_ARATH AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1 5 484 3.0E-31
sp|P38065|AP2A_YEAST AP-2 complex subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL3 PE=1 SV=1 6 672 4.0E-28
sp|Q9NFU6|COPB_TRYBB Coatomer subunit beta OS=Trypanosoma brucei brucei PE=3 SV=1 30 515 2.0E-11
sp|Q54HL0|COPG_DICDI Coatomer subunit gamma OS=Dictyostelium discoideum GN=copG PE=1 SV=1 21 492 5.0E-10
sp|Q9NZ52|GGA3_HUMAN ADP-ribosylation factor-binding protein GGA3 OS=Homo sapiens GN=GGA3 PE=1 SV=1 684 854 6.0E-10
sp|Q8BMI3|GGA3_MOUSE ADP-ribosylation factor-binding protein GGA3 OS=Mus musculus GN=Gga3 PE=1 SV=2 621 854 2.0E-09
sp|Q9I8E6|COPG2_TAKRU Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1 55 449 7.0E-09
sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 44 798 3.0E-08
sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 29 501 3.0E-08
sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 29 501 3.0E-08
sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1 81 484 3.0E-08
sp|Q6DKD7|COPG2_XENLA Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg2 PE=2 SV=1 49 449 7.0E-08
sp|Q66JI9|COPG2_XENTR Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1 49 449 8.0E-08
sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 29 501 9.0E-08
sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 29 501 9.0E-08
sp|P41810|COPB_YEAST Coatomer subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC26 PE=1 SV=2 99 484 1.0E-07
sp|Q9PUE4|COPG2_DANRE Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2 55 449 1.0E-07
sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 29 501 1.0E-07
sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2 81 501 3.0E-07
sp|Q6Z382|COPG2_ORYSJ Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1 49 449 3.0E-07
sp|Q8I0G5|COPG_DROME Coatomer subunit gamma OS=Drosophila melanogaster GN=gammaCOP PE=2 SV=1 71 435 5.0E-07
sp|Q29AE5|COPG_DROPS Coatomer subunit gamma OS=Drosophila pseudoobscura pseudoobscura GN=gammaCop PE=3 SV=1 71 435 7.0E-07
sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2 81 501 7.0E-07
sp|Q9QXK3|COPG2_MOUSE Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=1 SV=1 49 449 1.0E-06
sp|Q9UJY4|GGA2_HUMAN ADP-ribosylation factor-binding protein GGA2 OS=Homo sapiens GN=GGA2 PE=1 SV=3 696 854 1.0E-06
sp|D4ABY2|COPG2_RAT Coatomer subunit gamma-2 OS=Rattus norvegicus GN=Copg2 PE=3 SV=2 49 449 2.0E-06
sp|A2VE21|COPG2_BOVIN Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1 49 449 2.0E-06
sp|Q9UBF2|COPG2_HUMAN Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1 49 449 2.0E-06
sp|Q9SV21|COPB1_ARATH Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=2 SV=2 99 483 3.0E-06
sp|Q9SV20|COPB2_ARATH Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2 SV=2 99 483 5.0E-06
sp|Q0WW26|COPG_ARATH Coatomer subunit gamma OS=Arabidopsis thaliana GN=At4g34450 PE=1 SV=2 49 449 5.0E-06
sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1 81 553 5.0E-06
sp|O43079|AP1B1_SCHPO AP-1 complex subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl2 PE=1 SV=1 23 684 7.0E-06
[Show less]

GO

GO Term Description Terminal node
GO:0006886 intracellular protein transport Yes
GO:0016192 vesicle-mediated transport Yes
GO:0030117 membrane coat Yes
GO:0015031 protein transport No
GO:0051179 localization No
GO:0071705 nitrogen compound transport No
GO:0051234 establishment of localization No
GO:0005575 cellular_component No
GO:0070727 cellular macromolecule localization No
GO:0008150 biological_process No
GO:0098796 membrane protein complex No
GO:0045184 establishment of protein localization No
GO:0051641 cellular localization No
GO:0006810 transport No
GO:0008104 protein localization No
GO:0071702 organic substance transport No
GO:0033036 macromolecule localization No
GO:0046907 intracellular transport No
GO:0032991 protein-containing complex No
GO:0009987 cellular process No
GO:0051649 establishment of localization in cell No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 91.49 53.12 129.86
Initials Initials knots 75.90 44.56 107.24
Pileal_Stipeal_center Stage I stipe center 52.39 31.39 73.39
Pileal_Stipeal_shell Stage I stipe shell 55.36 33.02 77.70
DIF_stipe_center Stage II stipe center 74.05 43.75 104.34
DIF_stipe_shell Stage II stipe shell 69.15 40.93 97.37
DIF_stipe_skin Stage II stipe skin 61.07 36.39 85.76
DIF_cap_skin Stage II cap skin 65.30 38.86 91.73
DIF_cap_tissue Stage II cap tissue 68.54 40.65 96.43
DIF_gill_tissue Stage II gill tissue 55.97 33.37 78.57
YFB_stipe_center Young fruiting body stipe center 77.99 45.90 110.08
YFB_stipe_shell Young fruiting body stipe shell 81.84 48.07 115.62
YFB_stipe_skin Young fruiting body stipe skin 66.67 39.59 93.74
YFB_cap_skin Young fruiting body cap skin 64.59 38.45 90.72
YFB_cap_tissue Young fruiting body cap tissue 69.56 41.14 97.98
YFB_gill_tissue Young fruiting body gill tissue 58.46 34.78 82.14
YFB_veil Young fruiting body veil 51.16 30.49 71.82

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.081058 no
Casing YFB_stipe_center 0.702457 no
Casing YFB_stipe_shell 0.815262 no
Casing YFB_stipe_skin 0.325777 no
Casing YFB_cap_skin 0.263795 no
Casing YFB_cap_tissue 0.419263 no
Casing YFB_gill_tissue 0.122322 no
Casing YFB_veil 0.032266 yes
Casing Initials 0.640876 no
Casing Pileal_Stipeal_center 0.036683 yes
Casing Pileal_Stipeal_shell 0.068830 no
Casing DIF_stipe_center 0.568271 no
Casing DIF_stipe_shell 0.414478 no
Casing DIF_stipe_skin 0.177697 no
Casing DIF_cap_skin 0.284650 no
Casing DIF_cap_tissue 0.385302 no
DIF_gill_tissue YFB_stipe_center 0.294553 no
DIF_gill_tissue YFB_stipe_shell 0.206453 no
DIF_gill_tissue YFB_stipe_skin 0.655476 no
DIF_gill_tissue YFB_cap_skin 0.731975 no
DIF_gill_tissue YFB_cap_tissue 0.548442 no
DIF_gill_tissue YFB_gill_tissue 0.933861 no
DIF_gill_tissue YFB_veil 0.852643 no
YFB_stipe_center YFB_stipe_shell 0.928596 no
YFB_stipe_center YFB_stipe_skin 0.705059 no
YFB_stipe_center YFB_cap_skin 0.626278 no
YFB_stipe_center YFB_cap_tissue 0.800002 no
YFB_stipe_center YFB_gill_tissue 0.385452 no
YFB_stipe_center YFB_veil 0.149625 no
YFB_stipe_shell YFB_stipe_skin 0.584441 no
YFB_stipe_shell YFB_cap_skin 0.507667 no
YFB_stipe_shell YFB_cap_tissue 0.685889 no
YFB_stipe_shell YFB_gill_tissue 0.283263 no
YFB_stipe_shell YFB_veil 0.101862 no
YFB_stipe_skin YFB_cap_skin 0.953585 no
YFB_stipe_skin YFB_cap_tissue 0.937653 no
YFB_stipe_skin YFB_gill_tissue 0.760962 no
YFB_stipe_skin YFB_veil 0.435291 no
YFB_cap_skin YFB_cap_tissue 0.883406 no
YFB_cap_skin YFB_gill_tissue 0.833608 no
YFB_cap_skin YFB_veil 0.513776 no
YFB_cap_tissue YFB_gill_tissue 0.658255 no
YFB_cap_tissue YFB_veil 0.337581 no
YFB_gill_tissue YFB_veil 0.759871 no
Initials DIF_gill_tissue 0.350576 no
Initials YFB_stipe_center 0.961663 no
Initials YFB_stipe_shell 0.883873 no
Initials YFB_stipe_skin 0.770004 no
Initials YFB_cap_skin 0.691121 no
Initials YFB_cap_tissue 0.858524 no
Initials YFB_gill_tissue 0.446415 no
Initials YFB_veil 0.191686 no
Initials Pileal_Stipeal_center 0.216647 no
Initials Pileal_Stipeal_shell 0.324513 no
Initials DIF_stipe_center 0.964588 no
Initials DIF_stipe_shell 0.847361 no
Initials DIF_stipe_skin 0.554743 no
Initials DIF_cap_skin 0.717135 no
Initials DIF_cap_tissue 0.826628 no
Pileal_Stipeal_center DIF_gill_tissue 0.895608 no
Pileal_Stipeal_center YFB_stipe_center 0.169322 no
Pileal_Stipeal_center YFB_stipe_shell 0.112257 no
Pileal_Stipeal_center YFB_stipe_skin 0.479064 no
Pileal_Stipeal_center YFB_cap_skin 0.557659 no
Pileal_Stipeal_center YFB_cap_tissue 0.374960 no
Pileal_Stipeal_center YFB_gill_tissue 0.804569 no
Pileal_Stipeal_center YFB_veil 0.965563 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.915440 no
Pileal_Stipeal_center DIF_stipe_center 0.237227 no
Pileal_Stipeal_center DIF_stipe_shell 0.398374 no
Pileal_Stipeal_center DIF_stipe_skin 0.701728 no
Pileal_Stipeal_center DIF_cap_skin 0.530260 no
Pileal_Stipeal_center DIF_cap_tissue 0.411559 no
Pileal_Stipeal_shell DIF_gill_tissue 0.983404 no
Pileal_Stipeal_shell YFB_stipe_center 0.274660 no
Pileal_Stipeal_shell YFB_stipe_shell 0.189160 no
Pileal_Stipeal_shell YFB_stipe_skin 0.626650 no
Pileal_Stipeal_shell YFB_cap_skin 0.707415 no
Pileal_Stipeal_shell YFB_cap_tissue 0.519036 no
Pileal_Stipeal_shell YFB_gill_tissue 0.915332 no
Pileal_Stipeal_shell YFB_veil 0.874347 no
Pileal_Stipeal_shell DIF_stipe_center 0.371729 no
Pileal_Stipeal_shell DIF_stipe_shell 0.538578 no
Pileal_Stipeal_shell DIF_stipe_skin 0.834467 no
Pileal_Stipeal_shell DIF_cap_skin 0.678001 no
Pileal_Stipeal_shell DIF_cap_tissue 0.555105 no
DIF_stipe_center DIF_gill_tissue 0.395889 no
DIF_stipe_center YFB_stipe_center 0.921207 no
DIF_stipe_center YFB_stipe_shell 0.829206 no
DIF_stipe_center YFB_stipe_skin 0.815553 no
DIF_stipe_center YFB_cap_skin 0.744147 no
DIF_stipe_center YFB_cap_tissue 0.902192 no
DIF_stipe_center YFB_gill_tissue 0.497996 no
DIF_stipe_center YFB_veil 0.219193 no
DIF_stipe_center DIF_stipe_shell 0.891610 no
DIF_stipe_center DIF_stipe_skin 0.609752 no
DIF_stipe_center DIF_cap_skin 0.769267 no
DIF_stipe_center DIF_cap_tissue 0.871648 no
DIF_stipe_shell DIF_gill_tissue 0.566602 no
DIF_stipe_shell YFB_stipe_center 0.789486 no
DIF_stipe_shell YFB_stipe_shell 0.677720 no
DIF_stipe_shell YFB_stipe_skin 0.944281 no
DIF_stipe_shell YFB_cap_skin 0.888856 no
DIF_stipe_shell YFB_cap_tissue 0.990332 no
DIF_stipe_shell YFB_gill_tissue 0.670585 no
DIF_stipe_shell YFB_veil 0.352090 no
DIF_stipe_shell DIF_stipe_skin 0.774803 no
DIF_stipe_shell DIF_cap_skin 0.909947 no
DIF_stipe_shell DIF_cap_tissue 0.986251 no
DIF_stipe_skin DIF_gill_tissue 0.857763 no
DIF_stipe_skin YFB_stipe_center 0.492141 no
DIF_stipe_skin YFB_stipe_shell 0.378639 no
DIF_stipe_skin YFB_stipe_skin 0.853996 no
DIF_stipe_skin YFB_cap_skin 0.912168 no
DIF_stipe_skin YFB_cap_tissue 0.762306 no
DIF_stipe_skin YFB_gill_tissue 0.932869 no
DIF_stipe_skin YFB_veil 0.655336 no
DIF_stipe_skin DIF_cap_skin 0.893789 no
DIF_stipe_skin DIF_cap_tissue 0.792772 no
DIF_cap_skin DIF_gill_tissue 0.707979 no
DIF_cap_skin YFB_stipe_center 0.652826 no
DIF_cap_skin YFB_stipe_shell 0.536942 no
DIF_cap_skin YFB_stipe_skin 0.969178 no
DIF_cap_skin YFB_cap_skin 0.983572 no
DIF_cap_skin YFB_cap_tissue 0.900779 no
DIF_cap_skin YFB_gill_tissue 0.806738 no
DIF_cap_skin YFB_veil 0.484655 no
DIF_cap_skin DIF_cap_tissue 0.925356 no
DIF_cap_tissue DIF_gill_tissue 0.586753 no
DIF_cap_tissue YFB_stipe_center 0.768012 no
DIF_cap_tissue YFB_stipe_shell 0.655002 no
DIF_cap_tissue YFB_stipe_skin 0.960549 no
DIF_cap_tissue YFB_cap_skin 0.906202 no
DIF_cap_tissue YFB_cap_tissue 0.978913 no
DIF_cap_tissue YFB_gill_tissue 0.690933 no
DIF_cap_tissue YFB_veil 0.371072 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|093450
MPFHNLKALIKGIRACKTVADERALIQQESAAIRASFREEDSYQRHNNVAKLLYIHMLGSPAHFGQIECLKLVAS
PRFTDKRLGYLGIMLLLDENQEVLTLVTNSLKNDMNHSNMYAVGLALCTFANIASEEMSRDLANEIEKLLGSSNT
YIRKKASLCALRVIKKVPDLADHFINKAKNLLTDRNHGVLLTAITLVTEMSQIDPEYLNEFRNAVPLLVRNLKSL
ATTGYSPEHDVSGITDPFLQVKILKLLRLLGKGDAQSSEAMNDILAQVATNTDSTKNVGNSILYETVLTVLEIEA
DTGLRVMAINILGKFLSNRDNNIRYVALNTLNKVVSMDTNAVQRHRNIILDCLRDGDISIRRRALELSYALINEQ
NVRYLIRELLAFLEVADDEFKLGMTTQICLAAERFAPNKRWHIDTVLRVLKLAGNFVREEILSAFIRLVAHTPEL
QGYTASKLYLALKADISQESLTLAATWILGEYSEVLLQDGIISDDDQSTRVTDKDIIDLLVSTLDSPYANYLARQ
FVLAAVTKISSRNTTSTSEQERIAEILAKYTTALELELQQRAVEFASLYNLGSLREGVLERMPPPELKATIMGIV
SENKPVGSTRGEPDLLGDEITTGTTSTSNGQAAASAQSNQDLLAEIFGSSAPTTTSSQPTTQTQPKSTMDDILGL
FGSNNTASPAPTPVQATATPSAAPAPDPMSSLFSNTSSSPYSVASPVQSSSSPPAPSLPPTGQAASRLTAYTAYD
KNGLKVTLTPQTSPTKPGMVMILAKFSVEGSSPASSINFQAAVPKSQQLQMLPMSNTSVQPGATETQQMRVIAPI
GSSVRLRLRIVFAIAGQNFQDQVDFSGFPAGLTGST*
Coding >AgabiH97|093450
ATGCCGTTCCACAACCTCAAAGCGCTCATCAAGGGCATCAGAGCATGCAAGACCGTCGCAGATGAACGCGCCTTG
ATCCAGCAGGAATCCGCTGCCATCCGTGCCTCGTTCCGTGAAGAGGACTCCTATCAGCGACACAACAATGTCGCA
AAACTACTCTACATTCACATGCTCGGCTCTCCGGCCCATTTCGGTCAGATAGAATGCCTCAAGCTCGTCGCAAGT
CCACGCTTTACAGATAAAAGGCTGGGATATCTAGGCATCATGCTCCTCTTGGATGAGAACCAAGAAGTCCTTACT
CTGGTTACTAACTCACTCAAAAATGATATGAATCATTCCAATATGTACGCAGTAGGCTTGGCGCTGTGCACATTC
GCAAACATCGCCTCGGAAGAAATGTCTCGCGATCTCGCTAATGAGATCGAGAAGCTCTTGGGTTCAAGTAACACA
TACATTCGCAAAAAGGCCTCCTTATGTGCTCTGCGTGTTATAAAAAAAGTGCCGGACCTTGCAGACCATTTTATA
AACAAAGCCAAGAATTTACTAACAGACCGCAATCATGGCGTTCTGCTTACTGCGATAACACTCGTAACAGAGATG
TCCCAAATAGATCCCGAATACCTAAATGAGTTTCGCAACGCTGTTCCTTTACTCGTCAGAAACCTTAAATCCCTC
GCCACCACCGGCTACAGTCCAGAACACGATGTATCTGGAATCACAGATCCCTTTTTGCAAGTTAAGATCCTTAAG
CTACTGCGATTGCTAGGGAAGGGGGATGCACAGTCCAGTGAGGCCATGAACGACATCCTCGCACAGGTTGCAACC
AACACAGATTCCACGAAAAATGTTGGCAACTCAATTCTCTACGAGACCGTTCTTACGGTTCTGGAAATCGAGGCT
GATACTGGTCTTCGAGTGATGGCCATTAACATTCTTGGAAAGTTTTTGAGTAACCGGGATAACAACATCAGATAC
GTAGCCCTCAATACGCTTAACAAAGTCGTTTCAATGGATACGAATGCTGTCCAACGACATCGGAACATCATACTC
GACTGTCTGCGAGATGGTGATATCTCCATTCGTCGCCGTGCCCTGGAATTGTCCTATGCTCTAATAAATGAACAA
AACGTCCGTTATCTTATTCGGGAACTGCTGGCATTCCTGGAAGTGGCAGACGATGAATTCAAGCTTGGTATGACG
ACGCAGATCTGCCTTGCCGCAGAAAGATTTGCACCTAACAAACGCTGGCATATTGATACCGTATTGAGAGTTTTG
AAGTTGGCCGGCAATTTCGTGCGAGAGGAAATTCTATCGGCATTTATTCGGTTGGTTGCGCATACGCCTGAGCTC
CAAGGATATACCGCATCCAAACTGTATCTCGCTTTGAAAGCTGATATTTCTCAAGAATCTCTCACTTTGGCTGCA
ACTTGGATCCTTGGCGAATATAGCGAAGTATTACTGCAAGATGGTATTATTTCAGACGACGATCAATCTACTAGA
GTTACAGACAAGGATATAATAGATCTTCTTGTTTCAACCCTCGACTCGCCTTACGCCAACTATCTTGCTCGCCAA
TTTGTTCTTGCTGCCGTCACCAAGATTTCTTCACGCAATACTACATCTACGAGCGAGCAGGAACGTATAGCTGAG
ATTTTGGCCAAGTATACGACAGCCCTCGAGTTGGAATTACAGCAGCGTGCGGTCGAATTTGCTAGTTTGTACAAT
CTTGGAAGTTTAAGGGAGGGCGTACTGGAGAGGATGCCTCCACCAGAGCTTAAAGCCACGATAATGGGTATCGTG
AGCGAAAATAAACCAGTTGGCTCAACGAGAGGCGAACCAGACCTTCTGGGTGATGAAATCACTACTGGTACAACG
TCTACCTCCAATGGACAAGCAGCCGCGTCGGCTCAATCAAACCAAGACCTACTGGCAGAAATATTTGGCTCATCT
GCTCCAACAACGACATCGTCCCAACCTACGACACAAACGCAACCCAAATCAACCATGGATGATATTCTTGGTCTT
TTCGGCTCTAACAATACGGCTTCACCAGCGCCCACTCCCGTACAGGCCACTGCAACTCCATCAGCGGCTCCCGCA
CCAGACCCAATGTCGTCACTTTTCTCGAATACATCTTCATCGCCATACTCTGTTGCTTCGCCTGTGCAATCGTCA
TCATCGCCGCCTGCTCCTTCACTGCCACCTACAGGGCAGGCAGCATCACGTTTAACTGCATACACGGCGTATGAT
AAGAACGGTCTCAAGGTGACTTTGACTCCTCAAACGTCACCGACAAAACCGGGCATGGTCATGATTCTGGCCAAA
TTTTCTGTTGAAGGATCTTCACCTGCTAGTAGCATCAATTTCCAGGCTGCTGTACCAAAGTCTCAACAGCTTCAG
ATGTTACCGATGTCAAACACGAGCGTTCAACCAGGAGCTACGGAGACTCAACAAATGCGAGTTATTGCTCCTATT
GGGAGCTCCGTGCGTCTGCGGCTGCGTATCGTTTTCGCCATTGCTGGTCAAAACTTCCAGGACCAAGTAGACTTT
TCAGGTTTCCCAGCTGGTTTGACCGGCAGTACTTAA
Transcript >AgabiH97|093450
ATGCCGTTCCACAACCTCAAAGCGCTCATCAAGGGCATCAGAGCATGCAAGACCGTCGCAGATGAACGCGCCTTG
ATCCAGCAGGAATCCGCTGCCATCCGTGCCTCGTTCCGTGAAGAGGACTCCTATCAGCGACACAACAATGTCGCA
AAACTACTCTACATTCACATGCTCGGCTCTCCGGCCCATTTCGGTCAGATAGAATGCCTCAAGCTCGTCGCAAGT
CCACGCTTTACAGATAAAAGGCTGGGATATCTAGGCATCATGCTCCTCTTGGATGAGAACCAAGAAGTCCTTACT
CTGGTTACTAACTCACTCAAAAATGATATGAATCATTCCAATATGTACGCAGTAGGCTTGGCGCTGTGCACATTC
GCAAACATCGCCTCGGAAGAAATGTCTCGCGATCTCGCTAATGAGATCGAGAAGCTCTTGGGTTCAAGTAACACA
TACATTCGCAAAAAGGCCTCCTTATGTGCTCTGCGTGTTATAAAAAAAGTGCCGGACCTTGCAGACCATTTTATA
AACAAAGCCAAGAATTTACTAACAGACCGCAATCATGGCGTTCTGCTTACTGCGATAACACTCGTAACAGAGATG
TCCCAAATAGATCCCGAATACCTAAATGAGTTTCGCAACGCTGTTCCTTTACTCGTCAGAAACCTTAAATCCCTC
GCCACCACCGGCTACAGTCCAGAACACGATGTATCTGGAATCACAGATCCCTTTTTGCAAGTTAAGATCCTTAAG
CTACTGCGATTGCTAGGGAAGGGGGATGCACAGTCCAGTGAGGCCATGAACGACATCCTCGCACAGGTTGCAACC
AACACAGATTCCACGAAAAATGTTGGCAACTCAATTCTCTACGAGACCGTTCTTACGGTTCTGGAAATCGAGGCT
GATACTGGTCTTCGAGTGATGGCCATTAACATTCTTGGAAAGTTTTTGAGTAACCGGGATAACAACATCAGATAC
GTAGCCCTCAATACGCTTAACAAAGTCGTTTCAATGGATACGAATGCTGTCCAACGACATCGGAACATCATACTC
GACTGTCTGCGAGATGGTGATATCTCCATTCGTCGCCGTGCCCTGGAATTGTCCTATGCTCTAATAAATGAACAA
AACGTCCGTTATCTTATTCGGGAACTGCTGGCATTCCTGGAAGTGGCAGACGATGAATTCAAGCTTGGTATGACG
ACGCAGATCTGCCTTGCCGCAGAAAGATTTGCACCTAACAAACGCTGGCATATTGATACCGTATTGAGAGTTTTG
AAGTTGGCCGGCAATTTCGTGCGAGAGGAAATTCTATCGGCATTTATTCGGTTGGTTGCGCATACGCCTGAGCTC
CAAGGATATACCGCATCCAAACTGTATCTCGCTTTGAAAGCTGATATTTCTCAAGAATCTCTCACTTTGGCTGCA
ACTTGGATCCTTGGCGAATATAGCGAAGTATTACTGCAAGATGGTATTATTTCAGACGACGATCAATCTACTAGA
GTTACAGACAAGGATATAATAGATCTTCTTGTTTCAACCCTCGACTCGCCTTACGCCAACTATCTTGCTCGCCAA
TTTGTTCTTGCTGCCGTCACCAAGATTTCTTCACGCAATACTACATCTACGAGCGAGCAGGAACGTATAGCTGAG
ATTTTGGCCAAGTATACGACAGCCCTCGAGTTGGAATTACAGCAGCGTGCGGTCGAATTTGCTAGTTTGTACAAT
CTTGGAAGTTTAAGGGAGGGCGTACTGGAGAGGATGCCTCCACCAGAGCTTAAAGCCACGATAATGGGTATCGTG
AGCGAAAATAAACCAGTTGGCTCAACGAGAGGCGAACCAGACCTTCTGGGTGATGAAATCACTACTGGTACAACG
TCTACCTCCAATGGACAAGCAGCCGCGTCGGCTCAATCAAACCAAGACCTACTGGCAGAAATATTTGGCTCATCT
GCTCCAACAACGACATCGTCCCAACCTACGACACAAACGCAACCCAAATCAACCATGGATGATATTCTTGGTCTT
TTCGGCTCTAACAATACGGCTTCACCAGCGCCCACTCCCGTACAGGCCACTGCAACTCCATCAGCGGCTCCCGCA
CCAGACCCAATGTCGTCACTTTTCTCGAATACATCTTCATCGCCATACTCTGTTGCTTCGCCTGTGCAATCGTCA
TCATCGCCGCCTGCTCCTTCACTGCCACCTACAGGGCAGGCAGCATCACGTTTAACTGCATACACGGCGTATGAT
AAGAACGGTCTCAAGGTGACTTTGACTCCTCAAACGTCACCGACAAAACCGGGCATGGTCATGATTCTGGCCAAA
TTTTCTGTTGAAGGATCTTCACCTGCTAGTAGCATCAATTTCCAGGCTGCTGTACCAAAGTCTCAACAGCTTCAG
ATGTTACCGATGTCAAACACGAGCGTTCAACCAGGAGCTACGGAGACTCAACAAATGCGAGTTATTGCTCCTATT
GGGAGCTCCGTGCGTCTGCGGCTGCGTATCGTTTTCGCCATTGCTGGTCAAAACTTCCAGGACCAAGTAGACTTT
TCAGGTTTCCCAGCTGGTTTGACCGGCAGTACTTAA
Gene >AgabiH97|093450
ATGCCGTTCCACAACCTCAAAGGTTAGTCCAATTATTCGTAAATTACCGCTCTCCTCACCCTCCATCCAGCGCTC
ATCAAGGGCATCAGAGCATGCAAGGCTAGTCTTCTCTCTCCAGCCCCGATTTTCTATCTCAGATTCCTTCCAGAC
CGTCGCAGATGAACGCGCCTTGATCCAGCAGGAATCCGCTGCCATCCGTGCCTCGTTCCGTGAAGAGGACTCCTA
TCAGCGACACAACAATGTCGCAAAACTACTCTACATTCACATGCTCGGCTCTCCGGCCCATTTCGGTCAGATAGA
ATGCCTCAAGCTCGTCGCAAGTCCACGCTTTACAGATAAAAGGCTGGGATATCTAGGCATCATGCTCCTCTTGGA
TGAGAACCAAGAAGTCCTTACTCTGGTTACTAACTCACTCAAAAAGTAGGTTCTAATCTCTACTTACTGTGCCTC
GGTCTGATCAGGATTCGCAGTGATATGAATCATTCCAATATGTACGCAGTAGGCTTGGCGCTGTGCACATTCGCA
AACATCGCCTCGGAAGAAATGTCTCGCGATCTCGCTAATGAGATCGAGAAGCTCTTGGGTTCAAGTAACACATAC
ATTCGCAAAAAGGTTCGTATCCTCCTCTGCCCCTGCATCGTTCGCTATATCATATCACACTTAGGCCTCCTTATG
TGCTCTGCGTGTTATAAAAAAAGTGCCGGACCTTGCAGACCATTTTATAAACAAAGCCAAGAATTTACTAACAGA
CCGCAATCATGGCGTTCTGCTTACTGCGATAACACTCGTAACAGAGATGTCCCAAATAGATCCCGAATACCTAAA
TGAGTTTCGCAACGTGAGATCCTGTCCACAACCGCCACTCTCCTTATATCTTACTTTCTTAGGCTGTTCCTTTAC
TCGTCAGAAACCTTAAATCCCTCGCCACCACCGGCTACAGTCCAGAACACGATGTATCTGGAATCACAGATCCCT
TTTTGCAAGTTAAGATCCTTAAGCTACTGCGATTGCTAGGGAAGGGGGATGCACAGTCCAGTGAGGCCATGAACG
ACATCCTCGCACAGGTGCTGACTGAAAAGGTTTACGAATAACACGTTGCTGAATTTGATTATCGCAGGTTGCAAC
CAACACAGATTCCACGAAAAATGTTGGCAACTCAATTCTCTACGAGACCGTTCTTACGGTTCTGGAAATCGAGGC
TGATACTGGTCTTCGAGTGATGGCCATTAACATTCTTGGAAAGTTTTTGAGTAACCGGGATAACAACATCAGGTG
TGTTCGCCACTTCCTCTGCTCGACCATCCATTTTTCATGTTTTTTTTTTTCAGATACGTAGCCCTCAATACGCTT
AACAAAGTCGTTTCAATGGATACGAATGCTGTCCAACGACATCGGAACATCATACTCGACTGTCTGCGAGATGGT
GATATCTCCATTCGTCGCCGTGCCCTGGAATTGTCCTATGCTCTAATAAATGAACAAAACGTCCGTTATCTTATT
CGGGAACTGCTGGCATTCCTGGAAGTGGCAGACGATGAATTCAAGCTTGGTATGACGACGCAGATCTGCCTTGCC
GCAGAAAGATTTGCACCTAACAAACGCTGGCATATTGATACCGTATTGAGAGTTTTGAAGTTGGTAGGTGGAGAG
ACTATTATTCATGGCAATCTCAGGCTCACTATATTTCCAGGCCGGCAATTTCGTGCGAGAGGAAATTCTATCGGC
ATTTATTCGGTTGGTTGCGCATACGCCTGAGCTCCAAGGATATACCGCATCCAAACTGTATCTCGCTTTGAAAGC
TGATATTTCTCAAGAATCTCTCACTTTGGCTGCAACTTGGATCCTTGGCGAATATAGCGAAGTATTACTGCAAGA
TGGTATTATTTCAGACGACGATCAATCTACTAGAGTAAGCCCCCAAATTGGCTTTGACTTGCGCAAATCTAATTT
GATGTTAGGTTACAGACAAGGATATAATAGATCTTCTTGTTTCAACCCTCGACTCGCCTTACGCCAACTATCTTG
CTCGCCAATTTGTTCTTGCTGCCGTCACCAAGATTTCTTCACGCAATACTACATCTACGAGCGAGCAGGAACGTA
TAGCTGAGATTTTGGCCAAGTATACGACAGCCCTCGAGTTGGAATTACAGCAGCGTGCGGTCGAATTTGCTAGTT
TGTACAATCTTGGAAGTTTAAGGGAGGGCGTACTGGAGAGGATGCCTCCACCAGAGCTTAAAGCCACGATAATGG
GTATCGGTAAGTTGATTTGAATTCTCTGATAACATTTCTGGATGAATTGACTCCATTTCAGTGAGCGAAAATAAA
CCAGTTGGCTCAACGAGAGGCGAACCAGACCTTCTGGGTGATGAAATCACTACTGGTACAACGTCTACCTCCAAT
GGACAAGCAGCCGCGTCGGCTCAATCAAACCAAGACCTACTGGCAGAAATATTTGGCTCATCTGCTCCAACAACG
ACATCGTCCCAACCTACGACACAAACGCAACCCAAATCAACCATGGATGATATTCTTGGTCTTTTCGGCTCTAAC
AATACGGCTTCACCAGCGCCCACTCCCGTACAGGCCACTGCAACTCCATCAGCGGCTCCCGCACCAGACCCAATG
TCGTCACTTTTCTCGAATACATCTTCATCGCCATACTCTGTTGCTTCGCCTGTGCAATCGTCATCATCGCCGCCT
GCTCCTTCACTGCCACCTACAGGGCAGGCAGCATCACGTTTAACTGCATACACGGCGTATGATAAGAACGGTCTC
AAGGTGACTTTGACTCCTCAAACGTCACCGACAAAACCGGGCATGGTCATGATTCTGGCCAAATTTTCTGTTGAA
GGATCTTCACCTGCTAGTAGCATCAATTTCCAGGCTGCTGTACCAAAGGTATCCTTTTTCCTACCCCTTTCATTT
GGATGAACATAGTTTTGATGCTTTGTAGTCTCAACAGCTTCAGATGTTACCGATGTCAAACACGAGCGTTCAACC
AGGAGCTACGGAGACTCAACAAATGCGAGTTATTGCTCCTATTGGGGTAAGTTGTTTTTTTTTCTTCCTCTGGAT
AGGGTAAAGTTTTCCTGATATCTTGTGCAGAGCTCCGTGCGTCTGCGGCTGCGTATCGTTTTCGCCATTGCTGGT
CAAAACTTCCAGGACCAAGTAGACTTTTCAGGTTTCCCAGCTGGTTTGACCGGCAGTACTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail