Protein ID | AgabiH97|093450 |
Gene name | |
Location | scaffold_6:1339293..1342506 |
Strand | + |
Gene length (bp) | 3213 |
Transcript length (bp) | 2586 |
Coding sequence length (bp) | 2586 |
Protein length (aa) | 862 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01602 | Adaptin_N | Adaptin N terminal region | 1.1E-142 | 22 | 575 |
PF02883 | Alpha_adaptinC2 | Adaptin C-terminal domain | 6.0E-21 | 746 | 854 |
PF12717 | Cnd1 | non-SMC mitotic condensation complex subunit 1 | 1.3E-07 | 119 | 273 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O43747|AP1G1_HUMAN | AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5 | 6 | 854 | 0.0E+00 |
sp|Q99128|AP1G1_USTMA | AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=APL4 PE=3 SV=3 | 3 | 851 | 0.0E+00 |
sp|O75843|AP1G2_HUMAN | AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1 | 1 | 588 | 0.0E+00 |
sp|O88512|AP1G2_MOUSE | AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=1 SV=2 | 1 | 588 | 0.0E+00 |
sp|Q84K16|AP1G1_ARATH | AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1 | 2 | 857 | 0.0E+00 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O43747|AP1G1_HUMAN | AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5 | 6 | 854 | 0.0E+00 |
sp|Q99128|AP1G1_USTMA | AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=APL4 PE=3 SV=3 | 3 | 851 | 0.0E+00 |
sp|O75843|AP1G2_HUMAN | AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1 | 1 | 588 | 0.0E+00 |
sp|O88512|AP1G2_MOUSE | AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=1 SV=2 | 1 | 588 | 0.0E+00 |
sp|Q84K16|AP1G1_ARATH | AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1 | 2 | 857 | 0.0E+00 |
sp|Q9UU81|AP1G1_SCHPO | AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl4 PE=3 SV=1 | 6 | 857 | 0.0E+00 |
sp|Q8I8U2|AP1G_DICDI | AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1 | 6 | 605 | 0.0E+00 |
sp|Q5R5M2|AP1G1_PONAB | AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1 | 6 | 854 | 0.0E+00 |
sp|P22892|AP1G1_MOUSE | AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3 | 6 | 854 | 0.0E+00 |
sp|Q9ZUI6|AP1G2_ARATH | AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=1 SV=2 | 6 | 857 | 0.0E+00 |
sp|Q12028|AP1G1_YEAST | AP-1 complex subunit gamma-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL4 PE=1 SV=1 | 6 | 648 | 5.0E-98 |
sp|P17427|AP2A2_MOUSE | AP-2 complex subunit alpha-2 OS=Mus musculus GN=Ap2a2 PE=1 SV=2 | 6 | 604 | 9.0E-87 |
sp|P18484|AP2A2_RAT | AP-2 complex subunit alpha-2 OS=Rattus norvegicus GN=Ap2a2 PE=1 SV=3 | 6 | 604 | 1.0E-86 |
sp|Q0VCK5|AP2A2_BOVIN | AP-2 complex subunit alpha-2 OS=Bos taurus GN=AP2A2 PE=1 SV=1 | 6 | 604 | 8.0E-86 |
sp|O94973|AP2A2_HUMAN | AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP2A2 PE=1 SV=2 | 6 | 604 | 8.0E-86 |
sp|Q8LPL6|AP2A1_ARATH | AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR PE=1 SV=1 | 6 | 597 | 2.0E-85 |
sp|Q8LPK4|AP2A2_ARATH | AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana GN=ALPHAC-AD PE=1 SV=1 | 6 | 597 | 4.0E-85 |
sp|Q29N38|AP2A_DROPS | AP-2 complex subunit alpha OS=Drosophila pseudoobscura pseudoobscura GN=alpha-Adaptin PE=3 SV=1 | 6 | 683 | 6.0E-84 |
sp|Q7QG73|AP2A_ANOGA | AP-2 complex subunit alpha OS=Anopheles gambiae GN=alpha-Adaptin PE=3 SV=4 | 6 | 674 | 1.0E-83 |
sp|P17426|AP2A1_MOUSE | AP-2 complex subunit alpha-1 OS=Mus musculus GN=Ap2a1 PE=1 SV=1 | 6 | 704 | 3.0E-83 |
sp|O95782|AP2A1_HUMAN | AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP2A1 PE=1 SV=3 | 6 | 608 | 2.0E-82 |
sp|P91926|AP2A_DROME | AP-2 complex subunit alpha OS=Drosophila melanogaster GN=AP-2alpha PE=1 SV=1 | 6 | 677 | 1.0E-81 |
sp|Q86KI1|AP2A2_DICDI | AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1 PE=3 SV=1 | 6 | 588 | 1.0E-79 |
sp|Q8L7A9|AP4E_ARATH | AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730 PE=1 SV=1 | 9 | 576 | 3.0E-63 |
sp|Q9C0W7|AP2A_SCHPO | AP-2 complex subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl3 PE=3 SV=1 | 6 | 589 | 1.0E-62 |
sp|Q80V94|AP4E1_MOUSE | AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=1 SV=3 | 3 | 585 | 2.0E-60 |
sp|Q9UPM8|AP4E1_HUMAN | AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2 | 6 | 584 | 1.0E-57 |
sp|P54362|AP3D_DROME | AP-3 complex subunit delta OS=Drosophila melanogaster GN=g PE=1 SV=4 | 5 | 483 | 3.0E-48 |
sp|Q865S1|AP3D1_BOVIN | AP-3 complex subunit delta-1 OS=Bos taurus GN=AP3D1 PE=1 SV=2 | 5 | 567 | 1.0E-45 |
sp|O54774|AP3D1_MOUSE | AP-3 complex subunit delta-1 OS=Mus musculus GN=Ap3d1 PE=1 SV=1 | 5 | 567 | 2.0E-45 |
sp|O14617|AP3D1_HUMAN | AP-3 complex subunit delta-1 OS=Homo sapiens GN=AP3D1 PE=1 SV=1 | 5 | 486 | 5.0E-45 |
sp|Q54WN0|AP3D_DICDI | AP-3 complex subunit delta OS=Dictyostelium discoideum GN=ap3d1 PE=3 SV=1 | 9 | 483 | 1.0E-40 |
sp|Q54VE0|AP4E_DICDI | AP-4 complex subunit epsilon OS=Dictyostelium discoideum GN=ap4e1 PE=3 SV=1 | 9 | 427 | 1.0E-38 |
sp|Q9UTL8|AP3D_SCHPO | AP-3 complex subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl5 PE=3 SV=2 | 9 | 575 | 4.0E-33 |
sp|Q08951|AP3D_YEAST | AP-3 complex subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL5 PE=1 SV=1 | 6 | 577 | 1.0E-31 |
sp|Q755A1|AP3D_ASHGO | AP-3 complex subunit delta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL5 PE=3 SV=1 | 5 | 588 | 1.0E-31 |
sp|Q9C744|AP3D_ARATH | AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1 | 5 | 484 | 3.0E-31 |
sp|P38065|AP2A_YEAST | AP-2 complex subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL3 PE=1 SV=1 | 6 | 672 | 4.0E-28 |
sp|Q9NFU6|COPB_TRYBB | Coatomer subunit beta OS=Trypanosoma brucei brucei PE=3 SV=1 | 30 | 515 | 2.0E-11 |
sp|Q54HL0|COPG_DICDI | Coatomer subunit gamma OS=Dictyostelium discoideum GN=copG PE=1 SV=1 | 21 | 492 | 5.0E-10 |
sp|Q9NZ52|GGA3_HUMAN | ADP-ribosylation factor-binding protein GGA3 OS=Homo sapiens GN=GGA3 PE=1 SV=1 | 684 | 854 | 6.0E-10 |
sp|Q8BMI3|GGA3_MOUSE | ADP-ribosylation factor-binding protein GGA3 OS=Mus musculus GN=Gga3 PE=1 SV=2 | 621 | 854 | 2.0E-09 |
sp|Q9I8E6|COPG2_TAKRU | Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1 | 55 | 449 | 7.0E-09 |
sp|O81742|APBLC_ARATH | Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 | 44 | 798 | 3.0E-08 |
sp|Q08DS7|AP1B1_BOVIN | AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 | 29 | 501 | 3.0E-08 |
sp|P63009|AP2B1_BOVIN | AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 | 29 | 501 | 3.0E-08 |
sp|Q54X82|AP1B_DICDI | AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1 | 81 | 484 | 3.0E-08 |
sp|Q6DKD7|COPG2_XENLA | Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg2 PE=2 SV=1 | 49 | 449 | 7.0E-08 |
sp|Q66JI9|COPG2_XENTR | Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1 | 49 | 449 | 8.0E-08 |
sp|P62944|AP2B1_RAT | AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 | 29 | 501 | 9.0E-08 |
sp|P63010|AP2B1_HUMAN | AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 | 29 | 501 | 9.0E-08 |
sp|P41810|COPB_YEAST | Coatomer subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC26 PE=1 SV=2 | 99 | 484 | 1.0E-07 |
sp|Q9PUE4|COPG2_DANRE | Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2 | 55 | 449 | 1.0E-07 |
sp|Q9DBG3|AP2B1_MOUSE | AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 | 29 | 501 | 1.0E-07 |
sp|Q10567|AP1B1_HUMAN | AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2 | 81 | 501 | 3.0E-07 |
sp|Q6Z382|COPG2_ORYSJ | Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1 | 49 | 449 | 3.0E-07 |
sp|Q8I0G5|COPG_DROME | Coatomer subunit gamma OS=Drosophila melanogaster GN=gammaCOP PE=2 SV=1 | 71 | 435 | 5.0E-07 |
sp|Q29AE5|COPG_DROPS | Coatomer subunit gamma OS=Drosophila pseudoobscura pseudoobscura GN=gammaCop PE=3 SV=1 | 71 | 435 | 7.0E-07 |
sp|O35643|AP1B1_MOUSE | AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2 | 81 | 501 | 7.0E-07 |
sp|Q9QXK3|COPG2_MOUSE | Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=1 SV=1 | 49 | 449 | 1.0E-06 |
sp|Q9UJY4|GGA2_HUMAN | ADP-ribosylation factor-binding protein GGA2 OS=Homo sapiens GN=GGA2 PE=1 SV=3 | 696 | 854 | 1.0E-06 |
sp|D4ABY2|COPG2_RAT | Coatomer subunit gamma-2 OS=Rattus norvegicus GN=Copg2 PE=3 SV=2 | 49 | 449 | 2.0E-06 |
sp|A2VE21|COPG2_BOVIN | Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1 | 49 | 449 | 2.0E-06 |
sp|Q9UBF2|COPG2_HUMAN | Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1 | 49 | 449 | 2.0E-06 |
sp|Q9SV21|COPB1_ARATH | Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=2 SV=2 | 99 | 483 | 3.0E-06 |
sp|Q9SV20|COPB2_ARATH | Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2 SV=2 | 99 | 483 | 5.0E-06 |
sp|Q0WW26|COPG_ARATH | Coatomer subunit gamma OS=Arabidopsis thaliana GN=At4g34450 PE=1 SV=2 | 49 | 449 | 5.0E-06 |
sp|P52303|AP1B1_RAT | AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1 | 81 | 553 | 5.0E-06 |
sp|O43079|AP1B1_SCHPO | AP-1 complex subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl2 PE=1 SV=1 | 23 | 684 | 7.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006886 | intracellular protein transport | Yes |
GO:0016192 | vesicle-mediated transport | Yes |
GO:0030117 | membrane coat | Yes |
GO:0015031 | protein transport | No |
GO:0051179 | localization | No |
GO:0071705 | nitrogen compound transport | No |
GO:0051234 | establishment of localization | No |
GO:0005575 | cellular_component | No |
GO:0070727 | cellular macromolecule localization | No |
GO:0008150 | biological_process | No |
GO:0098796 | membrane protein complex | No |
GO:0045184 | establishment of protein localization | No |
GO:0051641 | cellular localization | No |
GO:0006810 | transport | No |
GO:0008104 | protein localization | No |
GO:0071702 | organic substance transport | No |
GO:0033036 | macromolecule localization | No |
GO:0046907 | intracellular transport | No |
GO:0032991 | protein-containing complex | No |
GO:0009987 | cellular process | No |
GO:0051649 | establishment of localization in cell | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 16 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 91.49 | 53.12 | 129.86 |
Initials | Initials knots | 75.90 | 44.56 | 107.24 |
Pileal_Stipeal_center | Stage I stipe center | 52.39 | 31.39 | 73.39 |
Pileal_Stipeal_shell | Stage I stipe shell | 55.36 | 33.02 | 77.70 |
DIF_stipe_center | Stage II stipe center | 74.05 | 43.75 | 104.34 |
DIF_stipe_shell | Stage II stipe shell | 69.15 | 40.93 | 97.37 |
DIF_stipe_skin | Stage II stipe skin | 61.07 | 36.39 | 85.76 |
DIF_cap_skin | Stage II cap skin | 65.30 | 38.86 | 91.73 |
DIF_cap_tissue | Stage II cap tissue | 68.54 | 40.65 | 96.43 |
DIF_gill_tissue | Stage II gill tissue | 55.97 | 33.37 | 78.57 |
YFB_stipe_center | Young fruiting body stipe center | 77.99 | 45.90 | 110.08 |
YFB_stipe_shell | Young fruiting body stipe shell | 81.84 | 48.07 | 115.62 |
YFB_stipe_skin | Young fruiting body stipe skin | 66.67 | 39.59 | 93.74 |
YFB_cap_skin | Young fruiting body cap skin | 64.59 | 38.45 | 90.72 |
YFB_cap_tissue | Young fruiting body cap tissue | 69.56 | 41.14 | 97.98 |
YFB_gill_tissue | Young fruiting body gill tissue | 58.46 | 34.78 | 82.14 |
YFB_veil | Young fruiting body veil | 51.16 | 30.49 | 71.82 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.081058 | no |
Casing | YFB_stipe_center | 0.702457 | no |
Casing | YFB_stipe_shell | 0.815262 | no |
Casing | YFB_stipe_skin | 0.325777 | no |
Casing | YFB_cap_skin | 0.263795 | no |
Casing | YFB_cap_tissue | 0.419263 | no |
Casing | YFB_gill_tissue | 0.122322 | no |
Casing | YFB_veil | 0.032266 | yes |
Casing | Initials | 0.640876 | no |
Casing | Pileal_Stipeal_center | 0.036683 | yes |
Casing | Pileal_Stipeal_shell | 0.068830 | no |
Casing | DIF_stipe_center | 0.568271 | no |
Casing | DIF_stipe_shell | 0.414478 | no |
Casing | DIF_stipe_skin | 0.177697 | no |
Casing | DIF_cap_skin | 0.284650 | no |
Casing | DIF_cap_tissue | 0.385302 | no |
DIF_gill_tissue | YFB_stipe_center | 0.294553 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.206453 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.655476 | no |
DIF_gill_tissue | YFB_cap_skin | 0.731975 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.548442 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.933861 | no |
DIF_gill_tissue | YFB_veil | 0.852643 | no |
YFB_stipe_center | YFB_stipe_shell | 0.928596 | no |
YFB_stipe_center | YFB_stipe_skin | 0.705059 | no |
YFB_stipe_center | YFB_cap_skin | 0.626278 | no |
YFB_stipe_center | YFB_cap_tissue | 0.800002 | no |
YFB_stipe_center | YFB_gill_tissue | 0.385452 | no |
YFB_stipe_center | YFB_veil | 0.149625 | no |
YFB_stipe_shell | YFB_stipe_skin | 0.584441 | no |
YFB_stipe_shell | YFB_cap_skin | 0.507667 | no |
YFB_stipe_shell | YFB_cap_tissue | 0.685889 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.283263 | no |
YFB_stipe_shell | YFB_veil | 0.101862 | no |
YFB_stipe_skin | YFB_cap_skin | 0.953585 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.937653 | no |
YFB_stipe_skin | YFB_gill_tissue | 0.760962 | no |
YFB_stipe_skin | YFB_veil | 0.435291 | no |
YFB_cap_skin | YFB_cap_tissue | 0.883406 | no |
YFB_cap_skin | YFB_gill_tissue | 0.833608 | no |
YFB_cap_skin | YFB_veil | 0.513776 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.658255 | no |
YFB_cap_tissue | YFB_veil | 0.337581 | no |
YFB_gill_tissue | YFB_veil | 0.759871 | no |
Initials | DIF_gill_tissue | 0.350576 | no |
Initials | YFB_stipe_center | 0.961663 | no |
Initials | YFB_stipe_shell | 0.883873 | no |
Initials | YFB_stipe_skin | 0.770004 | no |
Initials | YFB_cap_skin | 0.691121 | no |
Initials | YFB_cap_tissue | 0.858524 | no |
Initials | YFB_gill_tissue | 0.446415 | no |
Initials | YFB_veil | 0.191686 | no |
Initials | Pileal_Stipeal_center | 0.216647 | no |
Initials | Pileal_Stipeal_shell | 0.324513 | no |
Initials | DIF_stipe_center | 0.964588 | no |
Initials | DIF_stipe_shell | 0.847361 | no |
Initials | DIF_stipe_skin | 0.554743 | no |
Initials | DIF_cap_skin | 0.717135 | no |
Initials | DIF_cap_tissue | 0.826628 | no |
Pileal_Stipeal_center | DIF_gill_tissue | 0.895608 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.169322 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.112257 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.479064 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.557659 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.374960 | no |
Pileal_Stipeal_center | YFB_gill_tissue | 0.804569 | no |
Pileal_Stipeal_center | YFB_veil | 0.965563 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.915440 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.237227 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.398374 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.701728 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.530260 | no |
Pileal_Stipeal_center | DIF_cap_tissue | 0.411559 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.983404 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.274660 | no |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.189160 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.626650 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.707415 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.519036 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.915332 | no |
Pileal_Stipeal_shell | YFB_veil | 0.874347 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.371729 | no |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.538578 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.834467 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.678001 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.555105 | no |
DIF_stipe_center | DIF_gill_tissue | 0.395889 | no |
DIF_stipe_center | YFB_stipe_center | 0.921207 | no |
DIF_stipe_center | YFB_stipe_shell | 0.829206 | no |
DIF_stipe_center | YFB_stipe_skin | 0.815553 | no |
DIF_stipe_center | YFB_cap_skin | 0.744147 | no |
DIF_stipe_center | YFB_cap_tissue | 0.902192 | no |
DIF_stipe_center | YFB_gill_tissue | 0.497996 | no |
DIF_stipe_center | YFB_veil | 0.219193 | no |
DIF_stipe_center | DIF_stipe_shell | 0.891610 | no |
DIF_stipe_center | DIF_stipe_skin | 0.609752 | no |
DIF_stipe_center | DIF_cap_skin | 0.769267 | no |
DIF_stipe_center | DIF_cap_tissue | 0.871648 | no |
DIF_stipe_shell | DIF_gill_tissue | 0.566602 | no |
DIF_stipe_shell | YFB_stipe_center | 0.789486 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.677720 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.944281 | no |
DIF_stipe_shell | YFB_cap_skin | 0.888856 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.990332 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.670585 | no |
DIF_stipe_shell | YFB_veil | 0.352090 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.774803 | no |
DIF_stipe_shell | DIF_cap_skin | 0.909947 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.986251 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.857763 | no |
DIF_stipe_skin | YFB_stipe_center | 0.492141 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.378639 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.853996 | no |
DIF_stipe_skin | YFB_cap_skin | 0.912168 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.762306 | no |
DIF_stipe_skin | YFB_gill_tissue | 0.932869 | no |
DIF_stipe_skin | YFB_veil | 0.655336 | no |
DIF_stipe_skin | DIF_cap_skin | 0.893789 | no |
DIF_stipe_skin | DIF_cap_tissue | 0.792772 | no |
DIF_cap_skin | DIF_gill_tissue | 0.707979 | no |
DIF_cap_skin | YFB_stipe_center | 0.652826 | no |
DIF_cap_skin | YFB_stipe_shell | 0.536942 | no |
DIF_cap_skin | YFB_stipe_skin | 0.969178 | no |
DIF_cap_skin | YFB_cap_skin | 0.983572 | no |
DIF_cap_skin | YFB_cap_tissue | 0.900779 | no |
DIF_cap_skin | YFB_gill_tissue | 0.806738 | no |
DIF_cap_skin | YFB_veil | 0.484655 | no |
DIF_cap_skin | DIF_cap_tissue | 0.925356 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.586753 | no |
DIF_cap_tissue | YFB_stipe_center | 0.768012 | no |
DIF_cap_tissue | YFB_stipe_shell | 0.655002 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.960549 | no |
DIF_cap_tissue | YFB_cap_skin | 0.906202 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.978913 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.690933 | no |
DIF_cap_tissue | YFB_veil | 0.371072 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|093450 MPFHNLKALIKGIRACKTVADERALIQQESAAIRASFREEDSYQRHNNVAKLLYIHMLGSPAHFGQIECLKLVAS PRFTDKRLGYLGIMLLLDENQEVLTLVTNSLKNDMNHSNMYAVGLALCTFANIASEEMSRDLANEIEKLLGSSNT YIRKKASLCALRVIKKVPDLADHFINKAKNLLTDRNHGVLLTAITLVTEMSQIDPEYLNEFRNAVPLLVRNLKSL ATTGYSPEHDVSGITDPFLQVKILKLLRLLGKGDAQSSEAMNDILAQVATNTDSTKNVGNSILYETVLTVLEIEA DTGLRVMAINILGKFLSNRDNNIRYVALNTLNKVVSMDTNAVQRHRNIILDCLRDGDISIRRRALELSYALINEQ NVRYLIRELLAFLEVADDEFKLGMTTQICLAAERFAPNKRWHIDTVLRVLKLAGNFVREEILSAFIRLVAHTPEL QGYTASKLYLALKADISQESLTLAATWILGEYSEVLLQDGIISDDDQSTRVTDKDIIDLLVSTLDSPYANYLARQ FVLAAVTKISSRNTTSTSEQERIAEILAKYTTALELELQQRAVEFASLYNLGSLREGVLERMPPPELKATIMGIV SENKPVGSTRGEPDLLGDEITTGTTSTSNGQAAASAQSNQDLLAEIFGSSAPTTTSSQPTTQTQPKSTMDDILGL FGSNNTASPAPTPVQATATPSAAPAPDPMSSLFSNTSSSPYSVASPVQSSSSPPAPSLPPTGQAASRLTAYTAYD KNGLKVTLTPQTSPTKPGMVMILAKFSVEGSSPASSINFQAAVPKSQQLQMLPMSNTSVQPGATETQQMRVIAPI GSSVRLRLRIVFAIAGQNFQDQVDFSGFPAGLTGST* |
Coding | >AgabiH97|093450 ATGCCGTTCCACAACCTCAAAGCGCTCATCAAGGGCATCAGAGCATGCAAGACCGTCGCAGATGAACGCGCCTTG ATCCAGCAGGAATCCGCTGCCATCCGTGCCTCGTTCCGTGAAGAGGACTCCTATCAGCGACACAACAATGTCGCA AAACTACTCTACATTCACATGCTCGGCTCTCCGGCCCATTTCGGTCAGATAGAATGCCTCAAGCTCGTCGCAAGT CCACGCTTTACAGATAAAAGGCTGGGATATCTAGGCATCATGCTCCTCTTGGATGAGAACCAAGAAGTCCTTACT CTGGTTACTAACTCACTCAAAAATGATATGAATCATTCCAATATGTACGCAGTAGGCTTGGCGCTGTGCACATTC GCAAACATCGCCTCGGAAGAAATGTCTCGCGATCTCGCTAATGAGATCGAGAAGCTCTTGGGTTCAAGTAACACA TACATTCGCAAAAAGGCCTCCTTATGTGCTCTGCGTGTTATAAAAAAAGTGCCGGACCTTGCAGACCATTTTATA AACAAAGCCAAGAATTTACTAACAGACCGCAATCATGGCGTTCTGCTTACTGCGATAACACTCGTAACAGAGATG TCCCAAATAGATCCCGAATACCTAAATGAGTTTCGCAACGCTGTTCCTTTACTCGTCAGAAACCTTAAATCCCTC GCCACCACCGGCTACAGTCCAGAACACGATGTATCTGGAATCACAGATCCCTTTTTGCAAGTTAAGATCCTTAAG CTACTGCGATTGCTAGGGAAGGGGGATGCACAGTCCAGTGAGGCCATGAACGACATCCTCGCACAGGTTGCAACC AACACAGATTCCACGAAAAATGTTGGCAACTCAATTCTCTACGAGACCGTTCTTACGGTTCTGGAAATCGAGGCT GATACTGGTCTTCGAGTGATGGCCATTAACATTCTTGGAAAGTTTTTGAGTAACCGGGATAACAACATCAGATAC GTAGCCCTCAATACGCTTAACAAAGTCGTTTCAATGGATACGAATGCTGTCCAACGACATCGGAACATCATACTC GACTGTCTGCGAGATGGTGATATCTCCATTCGTCGCCGTGCCCTGGAATTGTCCTATGCTCTAATAAATGAACAA AACGTCCGTTATCTTATTCGGGAACTGCTGGCATTCCTGGAAGTGGCAGACGATGAATTCAAGCTTGGTATGACG ACGCAGATCTGCCTTGCCGCAGAAAGATTTGCACCTAACAAACGCTGGCATATTGATACCGTATTGAGAGTTTTG AAGTTGGCCGGCAATTTCGTGCGAGAGGAAATTCTATCGGCATTTATTCGGTTGGTTGCGCATACGCCTGAGCTC CAAGGATATACCGCATCCAAACTGTATCTCGCTTTGAAAGCTGATATTTCTCAAGAATCTCTCACTTTGGCTGCA ACTTGGATCCTTGGCGAATATAGCGAAGTATTACTGCAAGATGGTATTATTTCAGACGACGATCAATCTACTAGA GTTACAGACAAGGATATAATAGATCTTCTTGTTTCAACCCTCGACTCGCCTTACGCCAACTATCTTGCTCGCCAA TTTGTTCTTGCTGCCGTCACCAAGATTTCTTCACGCAATACTACATCTACGAGCGAGCAGGAACGTATAGCTGAG ATTTTGGCCAAGTATACGACAGCCCTCGAGTTGGAATTACAGCAGCGTGCGGTCGAATTTGCTAGTTTGTACAAT CTTGGAAGTTTAAGGGAGGGCGTACTGGAGAGGATGCCTCCACCAGAGCTTAAAGCCACGATAATGGGTATCGTG AGCGAAAATAAACCAGTTGGCTCAACGAGAGGCGAACCAGACCTTCTGGGTGATGAAATCACTACTGGTACAACG TCTACCTCCAATGGACAAGCAGCCGCGTCGGCTCAATCAAACCAAGACCTACTGGCAGAAATATTTGGCTCATCT GCTCCAACAACGACATCGTCCCAACCTACGACACAAACGCAACCCAAATCAACCATGGATGATATTCTTGGTCTT TTCGGCTCTAACAATACGGCTTCACCAGCGCCCACTCCCGTACAGGCCACTGCAACTCCATCAGCGGCTCCCGCA CCAGACCCAATGTCGTCACTTTTCTCGAATACATCTTCATCGCCATACTCTGTTGCTTCGCCTGTGCAATCGTCA TCATCGCCGCCTGCTCCTTCACTGCCACCTACAGGGCAGGCAGCATCACGTTTAACTGCATACACGGCGTATGAT AAGAACGGTCTCAAGGTGACTTTGACTCCTCAAACGTCACCGACAAAACCGGGCATGGTCATGATTCTGGCCAAA TTTTCTGTTGAAGGATCTTCACCTGCTAGTAGCATCAATTTCCAGGCTGCTGTACCAAAGTCTCAACAGCTTCAG ATGTTACCGATGTCAAACACGAGCGTTCAACCAGGAGCTACGGAGACTCAACAAATGCGAGTTATTGCTCCTATT GGGAGCTCCGTGCGTCTGCGGCTGCGTATCGTTTTCGCCATTGCTGGTCAAAACTTCCAGGACCAAGTAGACTTT TCAGGTTTCCCAGCTGGTTTGACCGGCAGTACTTAA |
Transcript | >AgabiH97|093450 ATGCCGTTCCACAACCTCAAAGCGCTCATCAAGGGCATCAGAGCATGCAAGACCGTCGCAGATGAACGCGCCTTG ATCCAGCAGGAATCCGCTGCCATCCGTGCCTCGTTCCGTGAAGAGGACTCCTATCAGCGACACAACAATGTCGCA AAACTACTCTACATTCACATGCTCGGCTCTCCGGCCCATTTCGGTCAGATAGAATGCCTCAAGCTCGTCGCAAGT CCACGCTTTACAGATAAAAGGCTGGGATATCTAGGCATCATGCTCCTCTTGGATGAGAACCAAGAAGTCCTTACT CTGGTTACTAACTCACTCAAAAATGATATGAATCATTCCAATATGTACGCAGTAGGCTTGGCGCTGTGCACATTC GCAAACATCGCCTCGGAAGAAATGTCTCGCGATCTCGCTAATGAGATCGAGAAGCTCTTGGGTTCAAGTAACACA TACATTCGCAAAAAGGCCTCCTTATGTGCTCTGCGTGTTATAAAAAAAGTGCCGGACCTTGCAGACCATTTTATA AACAAAGCCAAGAATTTACTAACAGACCGCAATCATGGCGTTCTGCTTACTGCGATAACACTCGTAACAGAGATG TCCCAAATAGATCCCGAATACCTAAATGAGTTTCGCAACGCTGTTCCTTTACTCGTCAGAAACCTTAAATCCCTC GCCACCACCGGCTACAGTCCAGAACACGATGTATCTGGAATCACAGATCCCTTTTTGCAAGTTAAGATCCTTAAG CTACTGCGATTGCTAGGGAAGGGGGATGCACAGTCCAGTGAGGCCATGAACGACATCCTCGCACAGGTTGCAACC AACACAGATTCCACGAAAAATGTTGGCAACTCAATTCTCTACGAGACCGTTCTTACGGTTCTGGAAATCGAGGCT GATACTGGTCTTCGAGTGATGGCCATTAACATTCTTGGAAAGTTTTTGAGTAACCGGGATAACAACATCAGATAC GTAGCCCTCAATACGCTTAACAAAGTCGTTTCAATGGATACGAATGCTGTCCAACGACATCGGAACATCATACTC GACTGTCTGCGAGATGGTGATATCTCCATTCGTCGCCGTGCCCTGGAATTGTCCTATGCTCTAATAAATGAACAA AACGTCCGTTATCTTATTCGGGAACTGCTGGCATTCCTGGAAGTGGCAGACGATGAATTCAAGCTTGGTATGACG ACGCAGATCTGCCTTGCCGCAGAAAGATTTGCACCTAACAAACGCTGGCATATTGATACCGTATTGAGAGTTTTG AAGTTGGCCGGCAATTTCGTGCGAGAGGAAATTCTATCGGCATTTATTCGGTTGGTTGCGCATACGCCTGAGCTC CAAGGATATACCGCATCCAAACTGTATCTCGCTTTGAAAGCTGATATTTCTCAAGAATCTCTCACTTTGGCTGCA ACTTGGATCCTTGGCGAATATAGCGAAGTATTACTGCAAGATGGTATTATTTCAGACGACGATCAATCTACTAGA GTTACAGACAAGGATATAATAGATCTTCTTGTTTCAACCCTCGACTCGCCTTACGCCAACTATCTTGCTCGCCAA TTTGTTCTTGCTGCCGTCACCAAGATTTCTTCACGCAATACTACATCTACGAGCGAGCAGGAACGTATAGCTGAG ATTTTGGCCAAGTATACGACAGCCCTCGAGTTGGAATTACAGCAGCGTGCGGTCGAATTTGCTAGTTTGTACAAT CTTGGAAGTTTAAGGGAGGGCGTACTGGAGAGGATGCCTCCACCAGAGCTTAAAGCCACGATAATGGGTATCGTG AGCGAAAATAAACCAGTTGGCTCAACGAGAGGCGAACCAGACCTTCTGGGTGATGAAATCACTACTGGTACAACG TCTACCTCCAATGGACAAGCAGCCGCGTCGGCTCAATCAAACCAAGACCTACTGGCAGAAATATTTGGCTCATCT GCTCCAACAACGACATCGTCCCAACCTACGACACAAACGCAACCCAAATCAACCATGGATGATATTCTTGGTCTT TTCGGCTCTAACAATACGGCTTCACCAGCGCCCACTCCCGTACAGGCCACTGCAACTCCATCAGCGGCTCCCGCA CCAGACCCAATGTCGTCACTTTTCTCGAATACATCTTCATCGCCATACTCTGTTGCTTCGCCTGTGCAATCGTCA TCATCGCCGCCTGCTCCTTCACTGCCACCTACAGGGCAGGCAGCATCACGTTTAACTGCATACACGGCGTATGAT AAGAACGGTCTCAAGGTGACTTTGACTCCTCAAACGTCACCGACAAAACCGGGCATGGTCATGATTCTGGCCAAA TTTTCTGTTGAAGGATCTTCACCTGCTAGTAGCATCAATTTCCAGGCTGCTGTACCAAAGTCTCAACAGCTTCAG ATGTTACCGATGTCAAACACGAGCGTTCAACCAGGAGCTACGGAGACTCAACAAATGCGAGTTATTGCTCCTATT GGGAGCTCCGTGCGTCTGCGGCTGCGTATCGTTTTCGCCATTGCTGGTCAAAACTTCCAGGACCAAGTAGACTTT TCAGGTTTCCCAGCTGGTTTGACCGGCAGTACTTAA |
Gene | >AgabiH97|093450 ATGCCGTTCCACAACCTCAAAGGTTAGTCCAATTATTCGTAAATTACCGCTCTCCTCACCCTCCATCCAGCGCTC ATCAAGGGCATCAGAGCATGCAAGGCTAGTCTTCTCTCTCCAGCCCCGATTTTCTATCTCAGATTCCTTCCAGAC CGTCGCAGATGAACGCGCCTTGATCCAGCAGGAATCCGCTGCCATCCGTGCCTCGTTCCGTGAAGAGGACTCCTA TCAGCGACACAACAATGTCGCAAAACTACTCTACATTCACATGCTCGGCTCTCCGGCCCATTTCGGTCAGATAGA ATGCCTCAAGCTCGTCGCAAGTCCACGCTTTACAGATAAAAGGCTGGGATATCTAGGCATCATGCTCCTCTTGGA TGAGAACCAAGAAGTCCTTACTCTGGTTACTAACTCACTCAAAAAGTAGGTTCTAATCTCTACTTACTGTGCCTC GGTCTGATCAGGATTCGCAGTGATATGAATCATTCCAATATGTACGCAGTAGGCTTGGCGCTGTGCACATTCGCA AACATCGCCTCGGAAGAAATGTCTCGCGATCTCGCTAATGAGATCGAGAAGCTCTTGGGTTCAAGTAACACATAC ATTCGCAAAAAGGTTCGTATCCTCCTCTGCCCCTGCATCGTTCGCTATATCATATCACACTTAGGCCTCCTTATG TGCTCTGCGTGTTATAAAAAAAGTGCCGGACCTTGCAGACCATTTTATAAACAAAGCCAAGAATTTACTAACAGA CCGCAATCATGGCGTTCTGCTTACTGCGATAACACTCGTAACAGAGATGTCCCAAATAGATCCCGAATACCTAAA TGAGTTTCGCAACGTGAGATCCTGTCCACAACCGCCACTCTCCTTATATCTTACTTTCTTAGGCTGTTCCTTTAC TCGTCAGAAACCTTAAATCCCTCGCCACCACCGGCTACAGTCCAGAACACGATGTATCTGGAATCACAGATCCCT TTTTGCAAGTTAAGATCCTTAAGCTACTGCGATTGCTAGGGAAGGGGGATGCACAGTCCAGTGAGGCCATGAACG ACATCCTCGCACAGGTGCTGACTGAAAAGGTTTACGAATAACACGTTGCTGAATTTGATTATCGCAGGTTGCAAC CAACACAGATTCCACGAAAAATGTTGGCAACTCAATTCTCTACGAGACCGTTCTTACGGTTCTGGAAATCGAGGC TGATACTGGTCTTCGAGTGATGGCCATTAACATTCTTGGAAAGTTTTTGAGTAACCGGGATAACAACATCAGGTG TGTTCGCCACTTCCTCTGCTCGACCATCCATTTTTCATGTTTTTTTTTTTCAGATACGTAGCCCTCAATACGCTT AACAAAGTCGTTTCAATGGATACGAATGCTGTCCAACGACATCGGAACATCATACTCGACTGTCTGCGAGATGGT GATATCTCCATTCGTCGCCGTGCCCTGGAATTGTCCTATGCTCTAATAAATGAACAAAACGTCCGTTATCTTATT CGGGAACTGCTGGCATTCCTGGAAGTGGCAGACGATGAATTCAAGCTTGGTATGACGACGCAGATCTGCCTTGCC GCAGAAAGATTTGCACCTAACAAACGCTGGCATATTGATACCGTATTGAGAGTTTTGAAGTTGGTAGGTGGAGAG ACTATTATTCATGGCAATCTCAGGCTCACTATATTTCCAGGCCGGCAATTTCGTGCGAGAGGAAATTCTATCGGC ATTTATTCGGTTGGTTGCGCATACGCCTGAGCTCCAAGGATATACCGCATCCAAACTGTATCTCGCTTTGAAAGC TGATATTTCTCAAGAATCTCTCACTTTGGCTGCAACTTGGATCCTTGGCGAATATAGCGAAGTATTACTGCAAGA TGGTATTATTTCAGACGACGATCAATCTACTAGAGTAAGCCCCCAAATTGGCTTTGACTTGCGCAAATCTAATTT GATGTTAGGTTACAGACAAGGATATAATAGATCTTCTTGTTTCAACCCTCGACTCGCCTTACGCCAACTATCTTG CTCGCCAATTTGTTCTTGCTGCCGTCACCAAGATTTCTTCACGCAATACTACATCTACGAGCGAGCAGGAACGTA TAGCTGAGATTTTGGCCAAGTATACGACAGCCCTCGAGTTGGAATTACAGCAGCGTGCGGTCGAATTTGCTAGTT TGTACAATCTTGGAAGTTTAAGGGAGGGCGTACTGGAGAGGATGCCTCCACCAGAGCTTAAAGCCACGATAATGG GTATCGGTAAGTTGATTTGAATTCTCTGATAACATTTCTGGATGAATTGACTCCATTTCAGTGAGCGAAAATAAA CCAGTTGGCTCAACGAGAGGCGAACCAGACCTTCTGGGTGATGAAATCACTACTGGTACAACGTCTACCTCCAAT GGACAAGCAGCCGCGTCGGCTCAATCAAACCAAGACCTACTGGCAGAAATATTTGGCTCATCTGCTCCAACAACG ACATCGTCCCAACCTACGACACAAACGCAACCCAAATCAACCATGGATGATATTCTTGGTCTTTTCGGCTCTAAC AATACGGCTTCACCAGCGCCCACTCCCGTACAGGCCACTGCAACTCCATCAGCGGCTCCCGCACCAGACCCAATG TCGTCACTTTTCTCGAATACATCTTCATCGCCATACTCTGTTGCTTCGCCTGTGCAATCGTCATCATCGCCGCCT GCTCCTTCACTGCCACCTACAGGGCAGGCAGCATCACGTTTAACTGCATACACGGCGTATGATAAGAACGGTCTC AAGGTGACTTTGACTCCTCAAACGTCACCGACAAAACCGGGCATGGTCATGATTCTGGCCAAATTTTCTGTTGAA GGATCTTCACCTGCTAGTAGCATCAATTTCCAGGCTGCTGTACCAAAGGTATCCTTTTTCCTACCCCTTTCATTT GGATGAACATAGTTTTGATGCTTTGTAGTCTCAACAGCTTCAGATGTTACCGATGTCAAACACGAGCGTTCAACC AGGAGCTACGGAGACTCAACAAATGCGAGTTATTGCTCCTATTGGGGTAAGTTGTTTTTTTTTCTTCCTCTGGAT AGGGTAAAGTTTTCCTGATATCTTGTGCAGAGCTCCGTGCGTCTGCGGCTGCGTATCGTTTTCGCCATTGCTGGT CAAAACTTCCAGGACCAAGTAGACTTTTCAGGTTTCCCAGCTGGTTTGACCGGCAGTACTTAA |