Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|093100
Gene name
Locationscaffold_6:1265100..1267187
Strand+
Gene length (bp)2087
Transcript length (bp)1731
Coding sequence length (bp)1731
Protein length (aa) 577

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07576 BRAP2 BRCA1-associated protein 2 2.4E-26 56 140
PF02148 zf-UBP Zn-finger in ubiquitin-hydrolases and other protein 2.6E-19 239 298
PF13639 zf-RING_2 Ring finger domain 5.4E-09 164 205
PF13445 zf-RING_UBOX RING-type zinc-finger 1.2E-05 165 202
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-05 63 123
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 9.3E-05 165 204

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 55 509 5.0E-95
sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 48 497 2.0E-90
sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 48 497 4.0E-87
sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 24 498 2.0E-84
sp|Q95QN6|BRAP2_CAEEL BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans GN=brap-2 PE=3 SV=1 58 499 7.0E-73
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 55 509 5.0E-95
sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 48 497 2.0E-90
sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 48 497 4.0E-87
sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 24 498 2.0E-84
sp|Q95QN6|BRAP2_CAEEL BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans GN=brap-2 PE=3 SV=1 58 499 7.0E-73
sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca GN=USP44 PE=3 SV=1 239 318 1.0E-08
sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=3 SV=2 226 297 4.0E-08
sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis GN=usp44 PE=2 SV=1 239 318 1.0E-07
sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2 239 318 1.0E-07
sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis GN=usp44-a PE=2 SV=1 239 318 2.0E-07
sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis GN=usp44-b PE=2 SV=1 239 318 2.0E-07
sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44 PE=2 SV=1 239 318 2.0E-07
sp|Q70CQ1|UBP49_HUMAN Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49 PE=1 SV=1 239 369 3.0E-07
sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44 PE=2 SV=3 239 318 1.0E-06
sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49 PE=2 SV=1 239 404 2.0E-06
sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1 237 298 7.0E-06
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GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0008270 zinc ion binding Yes
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0046914 transition metal ion binding No
GO:0043169 cation binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|093100
MGRQIGGRLGRRNNPKEVLRRRRVIHIFRDAENKPSPEELTKPTTEPLPQDEDAGVTLGVLAIPSWMTSSDFLDF
IGPAVEGIAHLRLIRDSEPNRSIGLIRFTNPADAADFIEIYNGKQFNSLEPEICQVVHVLSVQIEPDDVLSQAIS
RMSSTYGPAYELPSCPVCLDRMDSAVTGLITVPCSHTFHCTCLSKWGDSRCPICRYSQNIMTSHLSSSANRLSRP
PPFSISSSSSPSTCSECPSVTNLWICLICGNIGCGRYGRAHAHAHYQATTHLYALELETQRVWDYAGDGYVHRLI
QNKADGKLVELPSAASSVGRGAPSREGGEGGLGPSQSDALTAEKIEAIGIEYSYLLTSQLDSQRAYYEEQNTQLQ
TQLAELKDAMEQMKVEREHQKMLEEEKEARRQEEIAKVIEAAEKGKTKAEQRADRMRDLAKTLDKELKEERAVSE
GLMQNINSMKDRLNMAEVGQNESSEKIQELQEQVRDLMFFLEANTKIEQGGGVEAEAAGGRKRGKGRNNKSQGTR
YLTWIAWPCLLASWAYTKHTTQTSSWNKDRSSEGFSGFLFAHKLQTYSVLF*
Coding >AgabiH97|093100
ATGGGGCGACAGATAGGAGGCCGTTTGGGAAGGAGAAACAATCCAAAAGAGGTCCTGCGGAGGCGACGGGTCATT
CATATCTTTCGCGATGCCGAGAATAAACCATCACCTGAAGAACTTACGAAGCCTACAACGGAACCGCTACCTCAG
GATGAGGATGCTGGAGTGACATTGGGTGTACTTGCAATACCCTCTTGGATGACTTCCTCGGACTTTCTTGATTTT
ATTGGTCCTGCCGTTGAGGGTATTGCGCACCTGCGTTTAATTCGAGATTCTGAGCCGAATCGGTCTATTGGACTA
ATTCGATTCACAAATCCAGCTGACGCTGCAGACTTTATTGAGATATATAACGGAAAACAGTTCAATTCCTTGGAG
CCCGAAATATGCCAAGTCGTCCATGTCCTCTCGGTTCAAATTGAGCCAGATGACGTTTTATCCCAGGCCATTTCA
CGAATGAGCAGCACGTATGGACCTGCCTACGAGCTTCCTTCGTGTCCCGTATGCCTGGATCGCATGGATTCTGCT
GTCACTGGTCTCATCACCGTCCCTTGTTCGCATACATTTCACTGTACTTGTTTGAGTAAATGGGGAGATAGCCGA
TGTCCAATATGTCGTTATTCACAAAATATAATGACCTCGCATCTTTCTTCCTCAGCGAACCGACTATCACGACCA
CCACCTTTCAGTATTTCATCATCAAGCTCTCCATCTACTTGTTCCGAATGTCCTTCCGTCACGAATTTATGGATT
TGTCTTATATGCGGAAATATTGGATGTGGCCGGTATGGACGTGCGCATGCTCATGCACATTATCAAGCGACGACA
CATCTATATGCGTTGGAGCTCGAGACGCAGAGGGTTTGGGATTATGCTGGTGACGGATACGTTCACCGTCTCATT
CAAAATAAAGCAGATGGGAAATTGGTTGAACTCCCAAGTGCGGCTTCCTCTGTGGGCAGAGGAGCGCCTTCAAGA
GAAGGAGGAGAGGGAGGATTGGGACCAAGTCAAAGTGATGCTTTGACAGCTGAAAAAATCGAGGCGATTGGAATT
GAATATTCGTATCTCCTCACTTCGCAATTGGATTCCCAGCGCGCGTATTATGAAGAGCAGAATACGCAGCTTCAG
ACTCAGTTGGCGGAGTTGAAGGATGCCATGGAACAGATGAAAGTAGAGAGGGAACATCAGAAAATGTTGGAAGAG
GAGAAGGAGGCGCGACGACAAGAGGAAATTGCGAAAGTGATAGAAGCAGCGGAGAAGGGCAAGACCAAGGCAGAA
CAGAGAGCAGATCGAATGAGAGATCTTGCGAAAACGTTGGATAAAGAGCTGAAGGAGGAGAGGGCCGTATCGGAG
GGGTTGATGCAAAACATCAACTCCATGAAAGATAGGTTGAATATGGCGGAGGTGGGGCAGAACGAGTCTTCGGAG
AAAATTCAAGAACTACAGGAGCAAGTACGAGATTTGATGTTTTTCTTGGAAGCCAATACGAAGATTGAGCAGGGT
GGAGGGGTGGAGGCAGAGGCTGCTGGGGGAAGAAAAAGGGGAAAGGGAAGAAACAATAAGAGCCAAGGAACTCGA
TATTTGACTTGGATTGCATGGCCCTGTCTGTTGGCTTCTTGGGCCTATACGAAGCATACTACTCAAACCTCCTCC
TGGAATAAAGATCGATCTAGCGAGGGTTTTTCAGGATTTTTGTTTGCTCACAAATTGCAAACATATTCCGTCTTA
TTCTAG
Transcript >AgabiH97|093100
ATGGGGCGACAGATAGGAGGCCGTTTGGGAAGGAGAAACAATCCAAAAGAGGTCCTGCGGAGGCGACGGGTCATT
CATATCTTTCGCGATGCCGAGAATAAACCATCACCTGAAGAACTTACGAAGCCTACAACGGAACCGCTACCTCAG
GATGAGGATGCTGGAGTGACATTGGGTGTACTTGCAATACCCTCTTGGATGACTTCCTCGGACTTTCTTGATTTT
ATTGGTCCTGCCGTTGAGGGTATTGCGCACCTGCGTTTAATTCGAGATTCTGAGCCGAATCGGTCTATTGGACTA
ATTCGATTCACAAATCCAGCTGACGCTGCAGACTTTATTGAGATATATAACGGAAAACAGTTCAATTCCTTGGAG
CCCGAAATATGCCAAGTCGTCCATGTCCTCTCGGTTCAAATTGAGCCAGATGACGTTTTATCCCAGGCCATTTCA
CGAATGAGCAGCACGTATGGACCTGCCTACGAGCTTCCTTCGTGTCCCGTATGCCTGGATCGCATGGATTCTGCT
GTCACTGGTCTCATCACCGTCCCTTGTTCGCATACATTTCACTGTACTTGTTTGAGTAAATGGGGAGATAGCCGA
TGTCCAATATGTCGTTATTCACAAAATATAATGACCTCGCATCTTTCTTCCTCAGCGAACCGACTATCACGACCA
CCACCTTTCAGTATTTCATCATCAAGCTCTCCATCTACTTGTTCCGAATGTCCTTCCGTCACGAATTTATGGATT
TGTCTTATATGCGGAAATATTGGATGTGGCCGGTATGGACGTGCGCATGCTCATGCACATTATCAAGCGACGACA
CATCTATATGCGTTGGAGCTCGAGACGCAGAGGGTTTGGGATTATGCTGGTGACGGATACGTTCACCGTCTCATT
CAAAATAAAGCAGATGGGAAATTGGTTGAACTCCCAAGTGCGGCTTCCTCTGTGGGCAGAGGAGCGCCTTCAAGA
GAAGGAGGAGAGGGAGGATTGGGACCAAGTCAAAGTGATGCTTTGACAGCTGAAAAAATCGAGGCGATTGGAATT
GAATATTCGTATCTCCTCACTTCGCAATTGGATTCCCAGCGCGCGTATTATGAAGAGCAGAATACGCAGCTTCAG
ACTCAGTTGGCGGAGTTGAAGGATGCCATGGAACAGATGAAAGTAGAGAGGGAACATCAGAAAATGTTGGAAGAG
GAGAAGGAGGCGCGACGACAAGAGGAAATTGCGAAAGTGATAGAAGCAGCGGAGAAGGGCAAGACCAAGGCAGAA
CAGAGAGCAGATCGAATGAGAGATCTTGCGAAAACGTTGGATAAAGAGCTGAAGGAGGAGAGGGCCGTATCGGAG
GGGTTGATGCAAAACATCAACTCCATGAAAGATAGGTTGAATATGGCGGAGGTGGGGCAGAACGAGTCTTCGGAG
AAAATTCAAGAACTACAGGAGCAAGTACGAGATTTGATGTTTTTCTTGGAAGCCAATACGAAGATTGAGCAGGGT
GGAGGGGTGGAGGCAGAGGCTGCTGGGGGAAGAAAAAGGGGAAAGGGAAGAAACAATAAGAGCCAAGGAACTCGA
TATTTGACTTGGATTGCATGGCCCTGTCTGTTGGCTTCTTGGGCCTATACGAAGCATACTACTCAAACCTCCTCC
TGGAATAAAGATCGATCTAGCGAGGGTTTTTCAGGATTTTTGTTTGCTCACAAATTGCAAACATATTCCGTCTTA
TTCTAG
Gene >AgabiH97|093100
ATGGGGCGACAGATAGGAGGCCGTTTGGGAAGGAGAAACAATCCAAAAGAGGTAACAATCGAAAGAAAAACGTCC
AGGTTTTTATTAAATTATTAAACATTTTCAGGTCCTGCGGAGGCGACGTTTGTTTCTAAACCCCGTAGCAAGTTT
GGTAGTACTGATTTACCTGAAGGGGTCATTCATATCTTTCGCGATGCCGAGAATAAACCATCACCTGAAGAACTT
ACGAAGCCTACAACGGAACCGCTACCTCAGGATGAGGATGCTGGAGTGACATTGGGTGTACTTGCAATACCCTCT
TGGATGACTTCCTCGGACTTTCTTGATTTTATTGGTCCTGCCGTTGAGGGTATTGCGCACCTGCGTTTAATTCGG
TTTGTCTTCCTTTTAAGGGCTTATCGAAGCTTAACCACTCATTTCTCAGAGATTCTGAGCCGAATCGGTCTATTG
GACTAATTCGATTCACAAATCCAGCTGACGCTGCAGACTTTATTGAGATATATAACGGAAAACAGTTCAATTCCT
TGGAGGTATATTGCTTATCGTTCGACCAAGCTTGTTCGCTAATCGTTGTTACAATTTAGCCCGAAATATGCCAAG
TCGTCCATGTCCTCTCGGTTCAAATTGAGCCAGATGACGTTTTATCCCAGGCCATTTCACGAATGAGCAGCACGT
ATGGACCTGCCTACGAGCTTCCTTCGTGTCCCGTATGCCTGGATCGCATGGATTCTGCTGTCACTGGTCTCATCA
CCGTCCCTTGTTCGCATACATTTCACTGTACTTGTTTGAGTAAATGGGGAGATAGCCGGTAAGCGATTTCTGTTG
TCTTTTAAATCAAGTATATCTGACTCTGTGAACAGATGTCCAATATGTCGTTATTCACAAAATATAATGACCTCG
CATCTTTCTTCCTCAGCGAACCGACTATCACGACCACCACCTTTCAGTATTTCATCATCAAGCTCTCCATCTACT
TGTTCCGAATGTCCTTCCGTCACGAATTTATGGATTTGTCTTATATGCGGAAATATTGGATGTGGCCGGTATGGA
CGTGCGCATGCTCATGCACATTATCAAGCGACGACACATCTATATGCGTTGGAGCTCGAGACGCAGAGGGTTTGG
GATTATGCTGGTGACGGATACGTTCACCGTCTCATTCAAAATAAAGCAGATGGGAAATTGGTTGAACTCCCAAGT
GCGGCTTCCTCTGTGGGCAGAGGAGCGCCTTCAAGAGAAGGAGGAGAGGGAGGATTGGGACCAAGTCAAAGTGAT
GCTTTGACAGCTGAAAAAATCGAGGCGATTGGAATTGAATATTCGTATCTCCTCACTTCGCAATTGGATTCCCAG
CGCGCGTATTATGAAGAGCAGAATACGCAGCTTCAGACTCAGTTGGCGGAGTTGAAGGATGCCATGGAACAGATG
AAAGTAGAGAGGGAACATCAGAAAATGTTGGAAGAGGAGAAGGAGGCGCGACGACAAGAGGAAATTGCGAAAGTG
ATAGAAGCAGCGGAGAAGGGCAAGACCAAGGCAGAACAGAGAGCAGATCGAATGAGAGATCTTGCGAAAACGTTG
GATAAAGAGCTGAAGGAGGAGAGGGCCGTATCGGAGGGGTTGATGCAAAACATCAACTCCATGAAAGATAGGTTG
AATATGGCGGAGGTGGGGCAGAACGAGTCTTCGGAGAAAATTCAAGAACTACAGGAGCAAGTACGAGATTTGATG
TTTTTCTTGGAAGCCAATACGAAGATTGAGCAGGGTGGAGGGGTGGAGGCAGAGGCTGCTGGGGGTTCGATTGAA
ATCAGGACCGACCCTCGTACTAATTCTGATGCGAGGAAGAAAAAGGGGAAAGGGAAGAAACAATAAGAGCCAAGG
AACTCGATATTTGACTTGGATTGCATGGCCCTGTCTGTTGGCTTCTTGGGCCTATACGAAGCATACTACTCAAAC
CTCCTCCTGGAATAAAGATCGATCTAGCGAGGTACTGTCTCTGTTTAATGCCACATCTTCTGTCGCTTACTATAA
GGAAGGGTTTTTCAGGATTTTTGTTTGCTCACAAATTGCAAACATATTCCGTCTTATTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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