Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|092820
Gene name
Locationscaffold_6:1209805..1211887
Strand+
Gene length (bp)2082
Transcript length (bp)1371
Coding sequence length (bp)1371
Protein length (aa) 457

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10355 Ytp1 Protein of unknown function (Ytp1) 4.8E-57 148 408
PF10348 DUF2427 Domain of unknown function (DUF2427) 1.2E-26 27 123

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P53584|YTP1_YEAST Protein YTP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTP1 PE=1 SV=1 135 450 2.0E-63
sp|O59714|YBH6_SCHPO Uncharacterized membrane protein C3B8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3B8.06 PE=1 SV=1 135 414 2.0E-09
sp|P25639|YCV1_YEAST Uncharacterized membrane protein YCR061W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR061W PE=1 SV=2 207 381 1.0E-08

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Lysosome/Vacuole Signal peptide|Transmembrane domain 0.117 0.0741 0.0514 0.4315 0.0516 0.001 0.4087 0.8792 0.6436 0.0082

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 3 20 17
2 40 62 22
3 69 88 19
4 98 120 22
5 133 155 22
6 175 194 19
7 207 224 17
8 239 256 17
9 263 285 22
10 384 406 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 46.61 27.47 65.75
Initials Initials knots 39.83 23.21 56.45
Pileal_Stipeal_center Stage I stipe center 56.93 33.99 79.88
Pileal_Stipeal_shell Stage I stipe shell 60.46 36.13 84.80
DIF_stipe_center Stage II stipe center 51.27 30.39 72.14
DIF_stipe_shell Stage II stipe shell 51.68 30.57 72.80
DIF_stipe_skin Stage II stipe skin 53.39 31.67 75.11
DIF_cap_skin Stage II cap skin 74.49 44.79 104.19
DIF_cap_tissue Stage II cap tissue 73.51 43.91 103.11
DIF_gill_tissue Stage II gill tissue 60.57 36.09 85.06
YFB_stipe_center Young fruiting body stipe center 43.52 25.49 61.56
YFB_stipe_shell Young fruiting body stipe shell 45.26 26.50 64.02
YFB_stipe_skin Young fruiting body stipe skin 50.30 29.52 71.09
YFB_cap_skin Young fruiting body cap skin 75.56 45.40 105.72
YFB_cap_tissue Young fruiting body cap tissue 78.06 46.97 109.16
YFB_gill_tissue Young fruiting body gill tissue 69.15 41.46 96.84
YFB_veil Young fruiting body veil 61.85 36.78 86.91

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.447487 no
Casing YFB_stipe_center 0.896507 no
Casing YFB_stipe_shell 0.957195 no
Casing YFB_stipe_skin 0.882281 no
Casing YFB_cap_skin 0.079305 no
Casing YFB_cap_tissue 0.054982 no
Casing YFB_gill_tissue 0.170359 no
Casing YFB_veil 0.396117 no
Casing Initials 0.710508 no
Casing Pileal_Stipeal_center 0.598075 no
Casing Pileal_Stipeal_shell 0.451917 no
Casing DIF_stipe_center 0.841150 no
Casing DIF_stipe_shell 0.825085 no
Casing DIF_stipe_skin 0.755666 no
Casing DIF_cap_skin 0.093007 no
Casing DIF_cap_tissue 0.099273 no
DIF_gill_tissue YFB_stipe_center 0.304013 no
DIF_gill_tissue YFB_stipe_shell 0.392277 no
DIF_gill_tissue YFB_stipe_skin 0.640630 no
DIF_gill_tissue YFB_cap_skin 0.536668 no
DIF_gill_tissue YFB_cap_tissue 0.450443 no
DIF_gill_tissue YFB_gill_tissue 0.752319 no
DIF_gill_tissue YFB_veil 0.970806 no
YFB_stipe_center YFB_stipe_shell 0.943877 no
YFB_stipe_center YFB_stipe_skin 0.742851 no
YFB_stipe_center YFB_cap_skin 0.038495 yes
YFB_stipe_center YFB_cap_tissue 0.027698 yes
YFB_stipe_center YFB_gill_tissue 0.101372 no
YFB_stipe_center YFB_veil 0.260698 no
YFB_stipe_shell YFB_stipe_skin 0.829235 no
YFB_stipe_shell YFB_cap_skin 0.059318 no
YFB_stipe_shell YFB_cap_tissue 0.041386 yes
YFB_stipe_shell YFB_gill_tissue 0.139851 no
YFB_stipe_shell YFB_veil 0.334446 no
YFB_stipe_skin YFB_cap_skin 0.164759 no
YFB_stipe_skin YFB_cap_tissue 0.127489 no
YFB_stipe_skin YFB_gill_tissue 0.314158 no
YFB_stipe_skin YFB_veil 0.588047 no
YFB_cap_skin YFB_cap_tissue 0.952164 no
YFB_cap_skin YFB_gill_tissue 0.848935 no
YFB_cap_skin YFB_veil 0.589839 no
YFB_cap_tissue YFB_gill_tissue 0.779688 no
YFB_cap_tissue YFB_veil 0.508576 no
YFB_gill_tissue YFB_veil 0.805948 no
Initials DIF_gill_tissue 0.157175 no
Initials YFB_stipe_center 0.860975 no
Initials YFB_stipe_shell 0.779324 no
Initials YFB_stipe_skin 0.533691 no
Initials YFB_cap_skin 0.011659 yes
Initials YFB_cap_tissue 0.009446 yes
Initials YFB_gill_tissue 0.039390 yes
Initials YFB_veil 0.131698 no
Initials Pileal_Stipeal_center 0.248545 no
Initials Pileal_Stipeal_shell 0.154525 no
Initials DIF_stipe_center 0.472804 no
Initials DIF_stipe_shell 0.454694 no
Initials DIF_stipe_skin 0.384415 no
Initials DIF_cap_skin 0.018344 yes
Initials DIF_cap_tissue 0.021322 yes
Pileal_Stipeal_center DIF_gill_tissue 0.903887 no
Pileal_Stipeal_center YFB_stipe_center 0.444926 no
Pileal_Stipeal_center YFB_stipe_shell 0.542565 no
Pileal_Stipeal_center YFB_stipe_skin 0.785771 no
Pileal_Stipeal_center YFB_cap_skin 0.393961 no
Pileal_Stipeal_center YFB_cap_tissue 0.316695 no
Pileal_Stipeal_center YFB_gill_tissue 0.606272 no
Pileal_Stipeal_center YFB_veil 0.866298 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.906160 no
Pileal_Stipeal_center DIF_stipe_center 0.819797 no
Pileal_Stipeal_center DIF_stipe_shell 0.837513 no
Pileal_Stipeal_center DIF_stipe_skin 0.900960 no
Pileal_Stipeal_center DIF_cap_skin 0.428009 no
Pileal_Stipeal_center DIF_cap_tissue 0.456057 no
Pileal_Stipeal_shell DIF_gill_tissue 0.996774 no
Pileal_Stipeal_shell YFB_stipe_center 0.302114 no
Pileal_Stipeal_shell YFB_stipe_shell 0.393265 no
Pileal_Stipeal_shell YFB_stipe_skin 0.645077 no
Pileal_Stipeal_shell YFB_cap_skin 0.530650 no
Pileal_Stipeal_shell YFB_cap_tissue 0.444501 no
Pileal_Stipeal_shell YFB_gill_tissue 0.747569 no
Pileal_Stipeal_shell YFB_veil 0.967442 no
Pileal_Stipeal_shell DIF_stipe_center 0.680042 no
Pileal_Stipeal_shell DIF_stipe_shell 0.702138 no
Pileal_Stipeal_shell DIF_stipe_skin 0.778468 no
Pileal_Stipeal_shell DIF_cap_skin 0.569368 no
Pileal_Stipeal_shell DIF_cap_tissue 0.600363 no
DIF_stipe_center DIF_gill_tissue 0.679997 no
DIF_stipe_center YFB_stipe_center 0.692582 no
DIF_stipe_center YFB_stipe_shell 0.780611 no
DIF_stipe_center YFB_stipe_skin 0.974087 no
DIF_stipe_center YFB_cap_skin 0.187561 no
DIF_stipe_center YFB_cap_tissue 0.138986 no
DIF_stipe_center YFB_gill_tissue 0.348484 no
DIF_stipe_center YFB_veil 0.625726 no
DIF_stipe_center DIF_stipe_shell 0.988621 no
DIF_stipe_center DIF_stipe_skin 0.943031 no
DIF_stipe_center DIF_cap_skin 0.212262 no
DIF_stipe_center DIF_cap_tissue 0.224134 no
DIF_stipe_shell DIF_gill_tissue 0.697022 no
DIF_stipe_shell YFB_stipe_center 0.668614 no
DIF_stipe_shell YFB_stipe_shell 0.762268 no
DIF_stipe_shell YFB_stipe_skin 0.961663 no
DIF_stipe_shell YFB_cap_skin 0.197823 no
DIF_stipe_shell YFB_cap_tissue 0.150303 no
DIF_stipe_shell YFB_gill_tissue 0.359938 no
DIF_stipe_shell YFB_veil 0.642618 no
DIF_stipe_shell DIF_stipe_skin 0.952669 no
DIF_stipe_shell DIF_cap_skin 0.224708 no
DIF_stipe_shell DIF_cap_tissue 0.237992 no
DIF_stipe_skin DIF_gill_tissue 0.778030 no
DIF_stipe_skin YFB_stipe_center 0.596601 no
DIF_stipe_skin YFB_stipe_shell 0.692582 no
DIF_stipe_skin YFB_stipe_skin 0.913207 no
DIF_stipe_skin YFB_cap_skin 0.248876 no
DIF_stipe_skin YFB_cap_tissue 0.192781 no
DIF_stipe_skin YFB_gill_tissue 0.440174 no
DIF_stipe_skin YFB_veil 0.728260 no
DIF_stipe_skin DIF_cap_skin 0.281054 no
DIF_stipe_skin DIF_cap_tissue 0.303082 no
DIF_cap_skin DIF_gill_tissue 0.576062 no
DIF_cap_skin YFB_stipe_center 0.049882 yes
DIF_cap_skin YFB_stipe_shell 0.073949 no
DIF_cap_skin YFB_stipe_skin 0.183309 no
DIF_cap_skin YFB_cap_skin 0.977954 no
DIF_cap_skin YFB_cap_tissue 0.926793 no
DIF_cap_skin YFB_gill_tissue 0.873167 no
DIF_cap_skin YFB_veil 0.624900 no
DIF_cap_skin DIF_cap_tissue 0.979318 no
DIF_cap_tissue DIF_gill_tissue 0.605922 no
DIF_cap_tissue YFB_stipe_center 0.055979 no
DIF_cap_tissue YFB_stipe_shell 0.082633 no
DIF_cap_tissue YFB_stipe_skin 0.201976 no
DIF_cap_tissue YFB_cap_skin 0.959310 no
DIF_cap_tissue YFB_cap_tissue 0.904092 no
DIF_cap_tissue YFB_gill_tissue 0.898994 no
DIF_cap_tissue YFB_veil 0.653768 no

Orthologs

Orthofinder run ID1
Orthogroup4706
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|092820
Agaricus bisporus var bisporus H97 AgabiH97|092820 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|687_1

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|092820
MRLGPAAVVLSIAIVLVAAHEHHDELSEDEANAPVDAILWIHMFLQAAVWGIIFPIGMVLGLTRSRWHVPLQSTG
FALSIAGFFLGHAHKGRQFLPSIHGTFASILFIPIIAQLFIGIYLKLHIHERSIRPYVVFAHGILGKLYPILGWV
QMLFGAVTFRGYCRGGHLGQCLAHYIMGSGFIAYAVIMSIILLVGEAWVRRSGRSPEFWDSLIITLWGIVNTFTE
HHGGEWSVKDMQHTILGVLWWCGGILGIWLSRNNQRNVVPAIIIILTGWAMSDHAQALAISSKVHSMFGRTLMLA
GLTRIIEICYFSPTSVPNDVDDDSNSDRTIGGSLHTSPRDNGTTSAGFRAFRHLPPFLLVSSGLLFMSATDEELQ
FVHDNGMDHVTYILIIFSLAFFMYTLIVYLIHLSTASGRNAPTKTAENADMSQGMWYDRVPLAEERTPVRDIPLH
TIGEDD*
Coding >AgabiH97|092820
ATGCGTCTAGGCCCAGCGGCAGTGGTGCTGAGCATTGCAATCGTGTTGGTTGCAGCTCACGAGCATCATGACGAA
CTCTCAGAGGATGAGGCAAATGCACCCGTCGATGCCATCTTGTGGATACATATGTTCCTGCAGGCTGCTGTCTGG
GGAATCATATTTCCCATCGGAATGGTGCTTGGCCTGACGCGTAGTCGCTGGCACGTTCCATTACAGTCAACCGGA
TTTGCTCTTTCGATTGCCGGTTTCTTTTTGGGTCATGCACACAAGGGCCGGCAATTCCTTCCCTCAATTCACGGC
ACATTTGCGTCCATCCTATTCATTCCCATCATTGCCCAACTGTTTATTGGCATCTATCTCAAACTTCATATCCAC
GAACGAAGTATCCGACCATATGTTGTCTTTGCCCACGGAATTCTCGGAAAGTTGTATCCCATACTTGGATGGGTA
CAGATGCTTTTTGGCGCCGTTACTTTCCGCGGCTATTGTAGGGGTGGACATCTTGGTCAATGCTTAGCGCACTAC
ATCATGGGCAGTGGCTTCATCGCATATGCTGTCATCATGTCCATTATCTTGCTTGTTGGTGAGGCATGGGTCCGC
CGGTCTGGAAGAAGCCCAGAATTCTGGGATTCATTGATTATTACACTCTGGGGCATCGTGAATACCTTTACCGAA
CATCATGGAGGTGAATGGTCCGTCAAAGATATGCAACACACAATTTTAGGCGTTTTGTGGTGGTGTGGTGGTATC
CTTGGTATCTGGTTGTCACGAAATAACCAGCGAAATGTGGTTCCGGCTATTATTATCATTTTGACCGGATGGGCT
ATGTCGGATCATGCCCAGGCCCTTGCTATCTCATCTAAAGTGCACTCGATGTTTGGGCGTACATTGATGCTTGCG
GGTTTGACACGCATTATTGAAATTTGTTACTTTTCTCCAACGTCGGTGCCTAATGATGTGGATGATGACAGCAAC
AGTGACCGTACTATTGGCGGAAGCCTGCATACGTCGCCAAGAGACAATGGAACCACTAGCGCTGGTTTCCGCGCG
TTTAGACATCTCCCACCTTTCCTTTTGGTCTCCTCAGGGTTGCTCTTCATGTCAGCGACGGACGAGGAACTTCAA
TTTGTCCATGACAATGGAATGGATCATGTCACGTATATTTTAATCATCTTCAGCCTGGCTTTCTTTATGTACACG
CTCATCGTCTATCTTATCCATCTATCTACCGCTTCGGGACGTAATGCACCCACTAAAACCGCTGAAAACGCAGAC
ATGTCCCAAGGAATGTGGTATGATCGCGTGCCTCTAGCCGAGGAACGGACACCTGTTAGAGATATACCGCTGCAC
ACTATCGGAGAGGATGACTAG
Transcript >AgabiH97|092820
ATGCGTCTAGGCCCAGCGGCAGTGGTGCTGAGCATTGCAATCGTGTTGGTTGCAGCTCACGAGCATCATGACGAA
CTCTCAGAGGATGAGGCAAATGCACCCGTCGATGCCATCTTGTGGATACATATGTTCCTGCAGGCTGCTGTCTGG
GGAATCATATTTCCCATCGGAATGGTGCTTGGCCTGACGCGTAGTCGCTGGCACGTTCCATTACAGTCAACCGGA
TTTGCTCTTTCGATTGCCGGTTTCTTTTTGGGTCATGCACACAAGGGCCGGCAATTCCTTCCCTCAATTCACGGC
ACATTTGCGTCCATCCTATTCATTCCCATCATTGCCCAACTGTTTATTGGCATCTATCTCAAACTTCATATCCAC
GAACGAAGTATCCGACCATATGTTGTCTTTGCCCACGGAATTCTCGGAAAGTTGTATCCCATACTTGGATGGGTA
CAGATGCTTTTTGGCGCCGTTACTTTCCGCGGCTATTGTAGGGGTGGACATCTTGGTCAATGCTTAGCGCACTAC
ATCATGGGCAGTGGCTTCATCGCATATGCTGTCATCATGTCCATTATCTTGCTTGTTGGTGAGGCATGGGTCCGC
CGGTCTGGAAGAAGCCCAGAATTCTGGGATTCATTGATTATTACACTCTGGGGCATCGTGAATACCTTTACCGAA
CATCATGGAGGTGAATGGTCCGTCAAAGATATGCAACACACAATTTTAGGCGTTTTGTGGTGGTGTGGTGGTATC
CTTGGTATCTGGTTGTCACGAAATAACCAGCGAAATGTGGTTCCGGCTATTATTATCATTTTGACCGGATGGGCT
ATGTCGGATCATGCCCAGGCCCTTGCTATCTCATCTAAAGTGCACTCGATGTTTGGGCGTACATTGATGCTTGCG
GGTTTGACACGCATTATTGAAATTTGTTACTTTTCTCCAACGTCGGTGCCTAATGATGTGGATGATGACAGCAAC
AGTGACCGTACTATTGGCGGAAGCCTGCATACGTCGCCAAGAGACAATGGAACCACTAGCGCTGGTTTCCGCGCG
TTTAGACATCTCCCACCTTTCCTTTTGGTCTCCTCAGGGTTGCTCTTCATGTCAGCGACGGACGAGGAACTTCAA
TTTGTCCATGACAATGGAATGGATCATGTCACGTATATTTTAATCATCTTCAGCCTGGCTTTCTTTATGTACACG
CTCATCGTCTATCTTATCCATCTATCTACCGCTTCGGGACGTAATGCACCCACTAAAACCGCTGAAAACGCAGAC
ATGTCCCAAGGAATGTGGTATGATCGCGTGCCTCTAGCCGAGGAACGGACACCTGTTAGAGATATACCGCTGCAC
ACTATCGGAGAGGATGACTAG
Gene >AgabiH97|092820
ATGCGTCTAGGCCCAGCGGCAGTGGTGCTGAGCATTGCAATCGTGTTGGTTGCAGCTCACGAGCATCATGACGAA
CTCTCAGAGGATGAGGCAAATGCACCCGTCGATGCCATCTTGTGGATACATATGTTCCTGCAGGCTGCTGTCTGG
GGAATCATATTTCCCATCGGAATGGTGCTTGGCCTGACGCGTAGTCGCTGGCACGTTCCATTACAGGTGAACTCG
TTGTTTTCGTCCCTTTTTCGGTATTGATAGTCGATTAGTCAACCGGATTTGCTCTTTCGATTGCCGGTTTCTTTT
TGGGTCATGCACACAAGGGCCGGCAATTCCTTCCCTCAATTCACGGCACATTTGCGTCCATCCTATTCATTCCCA
TCATTGCCCAACTGTTTATTGGCATCTATCTCAAACTTCATATCCACGAACGAAGTATCCGACCATATGTTGTCT
TTGCCCACGGAATTCTCGGAAAGTTGTATCCCATACTTGGATGGGTACAGATGCTTTTTGGCGCCGTTACTTTCC
GCGGCTATTGTAGGGGTGGACATCTTGGTGAGATAATGATTTTCTTGCAACACTATTGGTTGAGCTTACGCTCGT
ATTTAGGTCAATGCTTAGCGCACTACATCATGGGCAGTGGCTTCATCGCATATGCTGTCATCATGTCCATTATCT
TGCTTGTTGGTGAGGCATGGGTCCGCCGGTCTGGAAGAAGCCCAGAATTCTGGGATTCATTGTGGGTATTTCTCT
CCTGATTTCAACTGTTGCTAATTCGCCTGTCCAGGATTATTACACTCTGGGTATGTTCATGATCTCTCTCACCTG
TCACATACTTGAATTAAAACCTTGCATTTCCATAGGGCATCGGTATGAAAAACTTTTAGTCATCTCGTTGGCGAC
CACTAATCATCTATTGTAAAAGTGAATACCTTTACCGAACATCATGGAGGTGAATGGTCCGTCAAAGATATGCAA
CACACGTAAGCTCTGCTTCACCTGCCCTTAACGCTAAATTGATTTGGTTGCGAAGAATTTTAGGCGTTTTGTGTA
AATTTTGGATATTCACTTAATGGCACATAACAAACCGGCTGATGGATGTTTCGACTTAGGGTGGTGTGGTGGTAT
CCTTGGTATCTGGTTGTCACGAAATAACCAGGTAAGCCATGAACGAGTCAACACTTCATGTTTTGTTTCTGACAT
CCAGTGTAGCGAAATGTGGTTCCGGCTATTATGTGAGACTACAGTTATTTTGGTCAGGTACAGGTCCTGAGTGTA
ACATTTCATTTTAGTATCATTTTGACCGGATGGGCTATGTCGGATCATGCCCAGGCCCTTGCTATCTCATCTAAA
GTTCGTTTCCGTTTTCCTATGTTTTCCTTGATTTTAAAATTCTCGTTGTCATCAGGTGCACTCGATGTTTGGGCG
TACATTGATGCTTGCGGGTTTGACACGCATTATTGAAATTTGTTACTTTTCTCCAACGTCGGTGCCTAATGATGT
GGATGATGACAGCAACAGTGACCGTACTATTGGCGGAAGCCTGCATACGTCGCCAAGAGACAATGGAACCACTAG
CGCTGGTTTCCGCGCGTTTAGACATCTCCCACCTTTCGTGAGTACATCCGTCTCGTACTTATAGGACCTGACTCT
AATAATTTTTCGACAGCTTTTGGTCTCCTCAGGGTAAATAGCTCGTGCGCTTATATCACAGGTTAGAAACTAGAT
CGTAAACGGAATCTTATAGGTTGCTCTTCATGTCAGCGACGGACGAGGAACTTCAATTTGTCCATGACAATGGAA
TGGATCATGTCACGTATATTTTAATCATCTTCAGGTATGTTTACATCCATTTTCACAAGCCATAGTCCCGCATAT
AACTCGTGTTGCAGCCTGGCTTTCTTTATGTACACGCTCATCGTCTATCTTATCCATCTATCTACCGCTTCGGGA
CGTAATGCACCCACTAAAACCGCTGAAAACGCAGACATGTCCCAAGGAATGTGGTATGATCGCGTGCCTCTAGCC
GAGGAACGGACACCTGTTAGAGATATACCGCTGCACACTATCGGAGAGGATGACTAG

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