Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|092820
Gene name
Location	scaffold_6:1209805..1211887
Strand	+
Gene length (bp)	2082
Transcript length (bp)	1371
Coding sequence length (bp)	1371
Protein length (aa)	457

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10355	Ytp1	Protein of unknown function (Ytp1)	4.8E-57	148	408
PF10348	DUF2427	Domain of unknown function (DUF2427)	1.2E-26	27	123

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53584\|YTP1_YEAST	Protein YTP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTP1 PE=1 SV=1	135	450	2.0E-63
sp\|O59714\|YBH6_SCHPO	Uncharacterized membrane protein C3B8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3B8.06 PE=1 SV=1	135	414	2.0E-09
sp\|P25639\|YCV1_YEAST	Uncharacterized membrane protein YCR061W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR061W PE=1 SV=2	207	381	1.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 20	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	3	20	17
2	40	62	22
3	69	88	19
4	98	120	22
5	133	155	22
6	175	194	19
7	207	224	17
8	239	256	17
9	263	285	22
10	384	406	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|092820 MRLGPAAVVLSIAIVLVAAHEHHDELSEDEANAPVDAILWIHMFLQAAVWGIIFPIGMVLGLTRSRWHVPLQSTG FALSIAGFFLGHAHKGRQFLPSIHGTFASILFIPIIAQLFIGIYLKLHIHERSIRPYVVFAHGILGKLYPILGWV QMLFGAVTFRGYCRGGHLGQCLAHYIMGSGFIAYAVIMSIILLVGEAWVRRSGRSPEFWDSLIITLWGIVNTFTE HHGGEWSVKDMQHTILGVLWWCGGILGIWLSRNNQRNVVPAIIIILTGWAMSDHAQALAISSKVHSMFGRTLMLA GLTRIIEICYFSPTSVPNDVDDDSNSDRTIGGSLHTSPRDNGTTSAGFRAFRHLPPFLLVSSGLLFMSATDEELQ FVHDNGMDHVTYILIIFSLAFFMYTLIVYLIHLSTASGRNAPTKTAENADMSQGMWYDRVPLAEERTPVRDIPLH TIGEDD*
Coding	>AgabiH97\|092820 ATGCGTCTAGGCCCAGCGGCAGTGGTGCTGAGCATTGCAATCGTGTTGGTTGCAGCTCACGAGCATCATGACGAA CTCTCAGAGGATGAGGCAAATGCACCCGTCGATGCCATCTTGTGGATACATATGTTCCTGCAGGCTGCTGTCTGG GGAATCATATTTCCCATCGGAATGGTGCTTGGCCTGACGCGTAGTCGCTGGCACGTTCCATTACAGTCAACCGGA TTTGCTCTTTCGATTGCCGGTTTCTTTTTGGGTCATGCACACAAGGGCCGGCAATTCCTTCCCTCAATTCACGGC ACATTTGCGTCCATCCTATTCATTCCCATCATTGCCCAACTGTTTATTGGCATCTATCTCAAACTTCATATCCAC GAACGAAGTATCCGACCATATGTTGTCTTTGCCCACGGAATTCTCGGAAAGTTGTATCCCATACTTGGATGGGTA CAGATGCTTTTTGGCGCCGTTACTTTCCGCGGCTATTGTAGGGGTGGACATCTTGGTCAATGCTTAGCGCACTAC ATCATGGGCAGTGGCTTCATCGCATATGCTGTCATCATGTCCATTATCTTGCTTGTTGGTGAGGCATGGGTCCGC CGGTCTGGAAGAAGCCCAGAATTCTGGGATTCATTGATTATTACACTCTGGGGCATCGTGAATACCTTTACCGAA CATCATGGAGGTGAATGGTCCGTCAAAGATATGCAACACACAATTTTAGGCGTTTTGTGGTGGTGTGGTGGTATC CTTGGTATCTGGTTGTCACGAAATAACCAGCGAAATGTGGTTCCGGCTATTATTATCATTTTGACCGGATGGGCT ATGTCGGATCATGCCCAGGCCCTTGCTATCTCATCTAAAGTGCACTCGATGTTTGGGCGTACATTGATGCTTGCG GGTTTGACACGCATTATTGAAATTTGTTACTTTTCTCCAACGTCGGTGCCTAATGATGTGGATGATGACAGCAAC AGTGACCGTACTATTGGCGGAAGCCTGCATACGTCGCCAAGAGACAATGGAACCACTAGCGCTGGTTTCCGCGCG TTTAGACATCTCCCACCTTTCCTTTTGGTCTCCTCAGGGTTGCTCTTCATGTCAGCGACGGACGAGGAACTTCAA TTTGTCCATGACAATGGAATGGATCATGTCACGTATATTTTAATCATCTTCAGCCTGGCTTTCTTTATGTACACG CTCATCGTCTATCTTATCCATCTATCTACCGCTTCGGGACGTAATGCACCCACTAAAACCGCTGAAAACGCAGAC ATGTCCCAAGGAATGTGGTATGATCGCGTGCCTCTAGCCGAGGAACGGACACCTGTTAGAGATATACCGCTGCAC ACTATCGGAGAGGATGACTAG
Transcript	>AgabiH97\|092820 ATGCGTCTAGGCCCAGCGGCAGTGGTGCTGAGCATTGCAATCGTGTTGGTTGCAGCTCACGAGCATCATGACGAA CTCTCAGAGGATGAGGCAAATGCACCCGTCGATGCCATCTTGTGGATACATATGTTCCTGCAGGCTGCTGTCTGG GGAATCATATTTCCCATCGGAATGGTGCTTGGCCTGACGCGTAGTCGCTGGCACGTTCCATTACAGTCAACCGGA TTTGCTCTTTCGATTGCCGGTTTCTTTTTGGGTCATGCACACAAGGGCCGGCAATTCCTTCCCTCAATTCACGGC ACATTTGCGTCCATCCTATTCATTCCCATCATTGCCCAACTGTTTATTGGCATCTATCTCAAACTTCATATCCAC GAACGAAGTATCCGACCATATGTTGTCTTTGCCCACGGAATTCTCGGAAAGTTGTATCCCATACTTGGATGGGTA CAGATGCTTTTTGGCGCCGTTACTTTCCGCGGCTATTGTAGGGGTGGACATCTTGGTCAATGCTTAGCGCACTAC ATCATGGGCAGTGGCTTCATCGCATATGCTGTCATCATGTCCATTATCTTGCTTGTTGGTGAGGCATGGGTCCGC CGGTCTGGAAGAAGCCCAGAATTCTGGGATTCATTGATTATTACACTCTGGGGCATCGTGAATACCTTTACCGAA CATCATGGAGGTGAATGGTCCGTCAAAGATATGCAACACACAATTTTAGGCGTTTTGTGGTGGTGTGGTGGTATC CTTGGTATCTGGTTGTCACGAAATAACCAGCGAAATGTGGTTCCGGCTATTATTATCATTTTGACCGGATGGGCT ATGTCGGATCATGCCCAGGCCCTTGCTATCTCATCTAAAGTGCACTCGATGTTTGGGCGTACATTGATGCTTGCG GGTTTGACACGCATTATTGAAATTTGTTACTTTTCTCCAACGTCGGTGCCTAATGATGTGGATGATGACAGCAAC AGTGACCGTACTATTGGCGGAAGCCTGCATACGTCGCCAAGAGACAATGGAACCACTAGCGCTGGTTTCCGCGCG TTTAGACATCTCCCACCTTTCCTTTTGGTCTCCTCAGGGTTGCTCTTCATGTCAGCGACGGACGAGGAACTTCAA TTTGTCCATGACAATGGAATGGATCATGTCACGTATATTTTAATCATCTTCAGCCTGGCTTTCTTTATGTACACG CTCATCGTCTATCTTATCCATCTATCTACCGCTTCGGGACGTAATGCACCCACTAAAACCGCTGAAAACGCAGAC ATGTCCCAAGGAATGTGGTATGATCGCGTGCCTCTAGCCGAGGAACGGACACCTGTTAGAGATATACCGCTGCAC ACTATCGGAGAGGATGACTAG
Gene	>AgabiH97\|092820 ATGCGTCTAGGCCCAGCGGCAGTGGTGCTGAGCATTGCAATCGTGTTGGTTGCAGCTCACGAGCATCATGACGAA CTCTCAGAGGATGAGGCAAATGCACCCGTCGATGCCATCTTGTGGATACATATGTTCCTGCAGGCTGCTGTCTGG GGAATCATATTTCCCATCGGAATGGTGCTTGGCCTGACGCGTAGTCGCTGGCACGTTCCATTACAGGTGAACTCG TTGTTTTCGTCCCTTTTTCGGTATTGATAGTCGATTAGTCAACCGGATTTGCTCTTTCGATTGCCGGTTTCTTTT TGGGTCATGCACACAAGGGCCGGCAATTCCTTCCCTCAATTCACGGCACATTTGCGTCCATCCTATTCATTCCCA TCATTGCCCAACTGTTTATTGGCATCTATCTCAAACTTCATATCCACGAACGAAGTATCCGACCATATGTTGTCT TTGCCCACGGAATTCTCGGAAAGTTGTATCCCATACTTGGATGGGTACAGATGCTTTTTGGCGCCGTTACTTTCC GCGGCTATTGTAGGGGTGGACATCTTGGTGAGATAATGATTTTCTTGCAACACTATTGGTTGAGCTTACGCTCGT ATTTAGGTCAATGCTTAGCGCACTACATCATGGGCAGTGGCTTCATCGCATATGCTGTCATCATGTCCATTATCT TGCTTGTTGGTGAGGCATGGGTCCGCCGGTCTGGAAGAAGCCCAGAATTCTGGGATTCATTGTGGGTATTTCTCT CCTGATTTCAACTGTTGCTAATTCGCCTGTCCAGGATTATTACACTCTGGGTATGTTCATGATCTCTCTCACCTG TCACATACTTGAATTAAAACCTTGCATTTCCATAGGGCATCGGTATGAAAAACTTTTAGTCATCTCGTTGGCGAC CACTAATCATCTATTGTAAAAGTGAATACCTTTACCGAACATCATGGAGGTGAATGGTCCGTCAAAGATATGCAA CACACGTAAGCTCTGCTTCACCTGCCCTTAACGCTAAATTGATTTGGTTGCGAAGAATTTTAGGCGTTTTGTGTA AATTTTGGATATTCACTTAATGGCACATAACAAACCGGCTGATGGATGTTTCGACTTAGGGTGGTGTGGTGGTAT CCTTGGTATCTGGTTGTCACGAAATAACCAGGTAAGCCATGAACGAGTCAACACTTCATGTTTTGTTTCTGACAT CCAGTGTAGCGAAATGTGGTTCCGGCTATTATGTGAGACTACAGTTATTTTGGTCAGGTACAGGTCCTGAGTGTA ACATTTCATTTTAGTATCATTTTGACCGGATGGGCTATGTCGGATCATGCCCAGGCCCTTGCTATCTCATCTAAA GTTCGTTTCCGTTTTCCTATGTTTTCCTTGATTTTAAAATTCTCGTTGTCATCAGGTGCACTCGATGTTTGGGCG TACATTGATGCTTGCGGGTTTGACACGCATTATTGAAATTTGTTACTTTTCTCCAACGTCGGTGCCTAATGATGT GGATGATGACAGCAACAGTGACCGTACTATTGGCGGAAGCCTGCATACGTCGCCAAGAGACAATGGAACCACTAG CGCTGGTTTCCGCGCGTTTAGACATCTCCCACCTTTCGTGAGTACATCCGTCTCGTACTTATAGGACCTGACTCT AATAATTTTTCGACAGCTTTTGGTCTCCTCAGGGTAAATAGCTCGTGCGCTTATATCACAGGTTAGAAACTAGAT CGTAAACGGAATCTTATAGGTTGCTCTTCATGTCAGCGACGGACGAGGAACTTCAATTTGTCCATGACAATGGAA TGGATCATGTCACGTATATTTTAATCATCTTCAGGTATGTTTACATCCATTTTCACAAGCCATAGTCCCGCATAT AACTCGTGTTGCAGCCTGGCTTTCTTTATGTACACGCTCATCGTCTATCTTATCCATCTATCTACCGCTTCGGGA CGTAATGCACCCACTAAAACCGCTGAAAACGCAGACATGTCCCAAGGAATGTGGTATGATCGCGTGCCTCTAGCC GAGGAACGGACACCTGTTAGAGATATACCGCTGCACACTATCGGAGAGGATGACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail