Protein ID | AgabiH97|092380 |
Gene name | |
Location | scaffold_6:1083441..1085428 |
Strand | + |
Gene length (bp) | 1987 |
Transcript length (bp) | 1248 |
Coding sequence length (bp) | 1248 |
Protein length (aa) | 416 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00704 | Glyco_hydro_18 | Glycosyl hydrolases family 18 | 1.5E-13 | 193 | 379 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005975 | carbohydrate metabolic process | Yes |
GO:0008152 | metabolic process | No |
GO:0008150 | biological_process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0044238 | primary metabolic process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1449 | 0.0729 | 0.9508 | 0.068 | 0.0671 | 0.0277 | 0.1407 | 0.1524 | 0.1441 | 0.007 |
CAZyme category | E-value | Start | End |
---|---|---|---|
GH18 | 2.4E-22 | 174 | 389 |
Orthofinder run ID | 1 |
Orthogroup | 548 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|092380 MSWESESHGICSLRPHYLEKCTILLLRMILWAADARLIFCQPRNMNSPNSFGIYTITRTLHSQNVPKCLNGPPPL PRSLKSIIPTKMFGYTRIAALLTGLSSLLAVAALPLESFNLTDTAKHFLTERAKNAVPGAPRFVVYGDRFVSGIT GPPPVNDVRGFNVFALSFLLTSGPADKAIEWTWLTDAERSNILTQYHNAGIQIIVSAFGATDAPTSTGRDPIATA NTMANFVRDFRLDGIDVDYEDFNAFNAGNGSAEQWLISFTRQLRQQLPSGAILTHAPVAPWFSASRFPAGGYLAI HRSVGNLIDWYNVQFYNQGTSEYTTCNNLLNTSSGTWPNSAVFQIAASGVPLSKIVIGKPATSGDASNGFMSTST LAQCAQQARNQGWNGGVMVWQYPNANANWIRDVRSLAFPV* |
Coding | >AgabiH97|092380 ATGTCATGGGAATCGGAAAGCCACGGCATCTGCAGTCTTCGTCCTCACTATCTGGAGAAATGTACCATATTGCTG CTCAGAATGATTTTATGGGCCGCGGATGCACGCCTCATTTTCTGTCAGCCAAGAAACATGAACTCTCCGAATTCC TTCGGCATCTACACGATAACAAGGACATTGCACTCTCAAAATGTTCCCAAGTGTTTGAATGGTCCACCACCCCTT CCTCGGTCTCTGAAGTCAATTATACCGACAAAGATGTTTGGATACACTCGCATCGCTGCTCTTCTTACTGGTCTC TCTAGCCTACTGGCTGTGGCTGCTTTGCCCCTTGAATCCTTCAACCTCACTGATACGGCAAAACACTTCCTCACC GAACGTGCCAAGAACGCCGTCCCAGGGGCACCACGCTTCGTCGTCTATGGTGATAGATTCGTCTCAGGTATCACT GGACCACCGCCAGTTAACGATGTTCGGGGTTTCAACGTTTTTGCCCTTTCTTTCCTCTTGACTTCAGGACCCGCT GATAAAGCTATTGAATGGACTTGGCTCACGGACGCCGAACGTTCTAATATCTTAACTCAGTACCATAACGCCGGC ATTCAAATTATCGTATCGGCTTTCGGTGCTACGGATGCTCCCACTTCAACTGGTAGAGATCCAATCGCCACCGCA AATACAATGGCCAACTTTGTCAGGGACTTCCGGCTAGACGGTATTGATGTCGACTACGAGGACTTCAACGCATTC AACGCTGGAAATGGATCGGCTGAGCAATGGCTCATTAGCTTCACCAGACAACTTCGACAACAACTGCCTTCAGGC GCTATTCTTACTCATGCCCCTGTCGCTCCATGGTTTTCGGCAAGCAGATTCCCTGCAGGTGGATATCTCGCCATC CACCGAAGTGTTGGAAACTTGATCGACTGGTACAATGTTCAATTCTATAACCAGGGCACCAGTGAATACACCACC TGCAACAACCTTCTTAACACATCTTCTGGTACCTGGCCTAACTCCGCTGTTTTCCAAATCGCGGCCAGTGGTGTT CCTCTCTCAAAGATTGTCATCGGAAAACCCGCCACCTCAGGCGATGCCAGTAACGGATTCATGTCGACCTCAACT TTGGCTCAGTGCGCGCAGCAGGCAAGGAACCAAGGCTGGAATGGTGGTGTTATGGTTTGGCAATACCCTAATGCA AACGCTAATTGGATTCGGGATGTCCGCTCGCTCGCATTCCCCGTGTAA |
Transcript | >AgabiH97|092380 ATGTCATGGGAATCGGAAAGCCACGGCATCTGCAGTCTTCGTCCTCACTATCTGGAGAAATGTACCATATTGCTG CTCAGAATGATTTTATGGGCCGCGGATGCACGCCTCATTTTCTGTCAGCCAAGAAACATGAACTCTCCGAATTCC TTCGGCATCTACACGATAACAAGGACATTGCACTCTCAAAATGTTCCCAAGTGTTTGAATGGTCCACCACCCCTT CCTCGGTCTCTGAAGTCAATTATACCGACAAAGATGTTTGGATACACTCGCATCGCTGCTCTTCTTACTGGTCTC TCTAGCCTACTGGCTGTGGCTGCTTTGCCCCTTGAATCCTTCAACCTCACTGATACGGCAAAACACTTCCTCACC GAACGTGCCAAGAACGCCGTCCCAGGGGCACCACGCTTCGTCGTCTATGGTGATAGATTCGTCTCAGGTATCACT GGACCACCGCCAGTTAACGATGTTCGGGGTTTCAACGTTTTTGCCCTTTCTTTCCTCTTGACTTCAGGACCCGCT GATAAAGCTATTGAATGGACTTGGCTCACGGACGCCGAACGTTCTAATATCTTAACTCAGTACCATAACGCCGGC ATTCAAATTATCGTATCGGCTTTCGGTGCTACGGATGCTCCCACTTCAACTGGTAGAGATCCAATCGCCACCGCA AATACAATGGCCAACTTTGTCAGGGACTTCCGGCTAGACGGTATTGATGTCGACTACGAGGACTTCAACGCATTC AACGCTGGAAATGGATCGGCTGAGCAATGGCTCATTAGCTTCACCAGACAACTTCGACAACAACTGCCTTCAGGC GCTATTCTTACTCATGCCCCTGTCGCTCCATGGTTTTCGGCAAGCAGATTCCCTGCAGGTGGATATCTCGCCATC CACCGAAGTGTTGGAAACTTGATCGACTGGTACAATGTTCAATTCTATAACCAGGGCACCAGTGAATACACCACC TGCAACAACCTTCTTAACACATCTTCTGGTACCTGGCCTAACTCCGCTGTTTTCCAAATCGCGGCCAGTGGTGTT CCTCTCTCAAAGATTGTCATCGGAAAACCCGCCACCTCAGGCGATGCCAGTAACGGATTCATGTCGACCTCAACT TTGGCTCAGTGCGCGCAGCAGGCAAGGAACCAAGGCTGGAATGGTGGTGTTATGGTTTGGCAATACCCTAATGCA AACGCTAATTGGATTCGGGATGTCCGCTCGCTCGCATTCCCCGTGTAA |
Gene | >AgabiH97|092380 ATGTCATGGGAATCGGAAAGCCACGGCATCTGCAGTGTGAGCTTTTTGGCTCTCATTTCGAATCTCTCACTCATG GCCCAATATCTCTTCCATATGATGTTCCGCGTGCTCTAGCTTCGTCCTCACTATCTGGAGAAATGTACCATATTG CTGCTCAGAATGATTTTATGGGCCGCGGATGCACGCCTCATTTTCTGTCAGCCAAGAAACATGAACTCTCCGAAT TCCTTCGGCATCTACACGATAACAAGGTTTTCTGGGTCACTTGCCATATGGTTGATGCAAGTTTGCCTTATTCTC GACTTTTAGGACATTGCACTCTCAAAATGTTCCCAAGTGTTTGAATGGTACTTTGGGAGGTATTTAAATGCGACC AAGAGCGACATAATGAGCTTCAAGGTCCACCACCCCTTCCTCGGTCTCTGAAGTCAATTATACCGACAAAGATGT TTGGATACACTCGCATCGCTGCTCTTCTTACTGGTCTCTCTAGCCTACTGGCTGTGGCTGCTTTGCCCCTTGAAT CCTTCAACCTCACTGATACGGCAAAACACTTCCTCACCGAACGTGCCAAGAACGCCGTCCCAGGGGCACCACGCT TCGTCGTCTATGGTGATAGATTCGTCTCAGGTATCACTGGACCACCGCCAGTTAACGATGTTCGGGTAAATGCAT TCATCTTTCGACGTGAACTCATATGCTAATCGTCCTTAACCGTAATGCAGGGTTTCAACGTTTTGTCTGTCCATG TTTTCAATCTTTATGAATATTACTAAAGCGTTTTCAGTGCCCTTTCTTTCCTCTTGACTTCAGGACCCGCTGATA AAGTACGATCCGATCAATTTACCACCTAAAAATCTAATTCTAACCCTCGCGTTTGTTTCCAGGCTATTGAATGGA CTTGGCTCACGGACGCCGAACGTTCTAATATCTTAACTCAGTACCATAACGCCGGCATTCAAATTATCGTATCGG CTTTCGGTGCTACGGATGCTCCCACTTCAACTGGTAGAGATCCAATCGCCACCGCAAATACAATGGCCAACTTTG TCAGGGACTTCCGGCTAGACGGTATTGATGTCGACTACGAGGTAAAGCTACACTATACTCGGATCATATGATATA TAACTGGAAGATTTAGGACTTCAACGCATTCAACGCTGGAAATGGATCGGCTGAGGTGACTTTCTCCCCCCCTAT TAACAAATACATTTTTGACATGTTCCCGTAGCAATGGCTCATTAGCTTCACCAGACAACTTCGACAACAACTGCC TTCAGGCGCTATTCTTACTCATGCCCGTGAGTTTTGATTCACCTTCTATGCAACTATATTTGGCTAAGTTCGCCT CAGCTGTCGCTCCATGGTACAGTTTATATTTGATTGATGTGGTTTATCACCTCTTGAAATTAAAACTAGGTTTTC GGCAAGCAGATTCCCTGCAGGTGGATATCTCGCCATCCACCGAAGTGTTGGAAACTTGATCGACTGGTACAATGT TCAAGTAAGTTTACCTTTGGCCTCGTATGTTCACATCCAACTCACGGGTATCTGTCGCGTAGTTCTATAACCGTA AGCAAAAAATATATATATACCGAAATTATTCTCAATGTTCACATGACTTTTAGAGGGCACCAGTGAATACACCAC CTGCAACAACCTTCTTAACACATCTTCTGGTACCTGGCCTAACTCCGCTGTTTTCCAAATCGCGGCCAGTGGTGT TCCTCTCTCAAAGATTGTCATCGGAAAACCCGCCACCTCAGGCGATGCCAGTAACGGATTCATGTCGACCTCAAC TTTGGCTCAGTGCGCGCAGCAGGCAAGGAACCAAGGCTGGAGTACGTATCTATATTGTTGCATTACCTTTGGAGT GTGCACTGACCATGAGAATGTACGATTAGATGGTGGTGTTATGGTTTGGCAATACCCTAATGCAAACGCTAATTG GATTCGGGATGTCCGCTCGCTCGCATTCCCCGTGTAA |