Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|092070
Gene name
Location	scaffold_6:1008523..1010187
Strand	+
Gene length (bp)	1664
Transcript length (bp)	1386
Coding sequence length (bp)	1386
Protein length (aa)	462

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF07808	RED_N	RED-like protein N-terminal region	9.7E-17	49	159

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q66HG8\|RED_RAT	Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1	57	129	1.0E-08
sp\|Q13123\|RED_HUMAN	Protein Red OS=Homo sapiens GN=IK PE=1 SV=3	57	129	1.0E-08
sp\|Q9Z1M8\|RED_MOUSE	Protein Red OS=Mus musculus GN=Ik PE=1 SV=2	57	129	1.0E-08
sp\|Q5NVI3\|RED_PONAB	Protein Red OS=Pongo abelii GN=IK PE=2 SV=1	57	129	1.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 25	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|092070 MDQESFRLLLQSGSSPGAPVGSRANISSTSVKSKKVESSKPTFKPRKVKKVITADSKYRDRAAERRVGGGNDYAH VEAIRDDFERQIAGNEDQTDVEEKRKYLGGDGEHSILVKGLDMALLEQNKARVAQEETVDDDTLEQVYLEASSSA TVPKKRTRQDLIKELKQKRSRQDDPDSSATPESQTQASTIEKGDALEDAKKQGKFKPIGFKPIGALEEGKKKKKN KNGGNVKEGGERKKKKRKVASPEAEVSKAKVPLPPSTEDPPPIPTNQSTAKVKEPEPEPLLEEDFDIFAGAGDYE GLEVDDEEGEDETEPPAKSTSQEPAPAGSSRKWIEMEEEALSKPIPLPHEANDSKGLPSPNETQGRDPNRSDVEM KGGAVPENEENEEQRTMRLEALESSNLPSIRDFLAMDDAALAAEKRKKRKEKKKSAGGPKSMEAKVNRDYQRLQS YTSKKEGSGSR*
Coding	>AgabiH97\|092070 ATGGACCAGGAATCATTCAGACTTCTACTTCAATCAGGATCATCCCCGGGCGCCCCAGTTGGGTCCCGAGCAAAT ATCTCTTCCACCTCGGTTAAATCGAAGAAAGTAGAAAGCTCAAAACCTACTTTCAAACCACGTAAAGTCAAGAAA GTAATAACCGCCGACAGCAAGTATCGTGATCGAGCGGCCGAACGACGTGTAGGCGGAGGAAATGACTATGCTCAC GTGGAAGCCATCCGAGACGACTTTGAACGTCAAATCGCTGGTAATGAAGACCAAACGGACGTTGAAGAGAAGCGC AAATACTTGGGTGGAGATGGTGAACACTCTATTCTCGTCAAAGGTCTCGACATGGCACTTTTAGAGCAGAACAAA GCTCGGGTCGCGCAGGAGGAAACTGTAGATGACGACACTCTCGAACAAGTCTATCTCGAGGCTTCTTCATCTGCT ACCGTTCCCAAAAAGCGCACGCGGCAAGACCTCATCAAGGAACTCAAGCAAAAGCGATCTCGACAAGACGACCCT GATTCCAGTGCTACTCCCGAGTCACAAACACAGGCATCCACAATTGAGAAAGGAGATGCGTTAGAAGACGCGAAG AAGCAAGGAAAGTTCAAACCTATCGGCTTCAAGCCAATAGGTGCTCTAGAAGAGGGGAAGAAAAAAAAGAAGAAC AAGAATGGTGGAAATGTTAAAGAGGGTGGAGAGAGGAAAAAGAAAAAGCGTAAAGTTGCAAGCCCTGAAGCTGAG GTATCAAAGGCGAAAGTTCCATTGCCCCCCTCCACCGAAGACCCGCCACCTATCCCCACAAATCAATCAACTGCA AAGGTTAAAGAGCCGGAACCAGAACCTCTGTTGGAAGAGGATTTCGATATTTTTGCTGGTGCCGGTGATTATGAA GGTCTTGAGGTTGATGACGAAGAGGGCGAAGATGAAACAGAGCCTCCTGCTAAGTCAACATCTCAAGAGCCTGCA CCGGCTGGTTCGTCAAGAAAATGGATTGAAATGGAAGAAGAAGCACTTTCTAAGCCGATTCCTTTGCCGCATGAA GCGAATGACTCGAAGGGCTTACCTTCGCCGAACGAGACTCAGGGTAGAGATCCAAATAGGTCCGACGTTGAGATG AAAGGTGGAGCAGTGCCAGAAAACGAGGAAAATGAAGAACAGCGAACAATGCGATTAGAAGCTTTAGAAAGCTCT AATTTACCTTCAATACGAGATTTCCTAGCTATGGATGATGCCGCATTGGCAGCGGAGAAGCGGAAAAAGCGGAAA GAGAAGAAGAAATCGGCTGGTGGTCCTAAAAGCATGGAAGCGAAAGTCAATCGCGATTATCAGCGGCTGCAATCG TACACCAGCAAAAAAGAAGGCTCGGGGTCCCGGTAA
Transcript	>AgabiH97\|092070 ATGGACCAGGAATCATTCAGACTTCTACTTCAATCAGGATCATCCCCGGGCGCCCCAGTTGGGTCCCGAGCAAAT ATCTCTTCCACCTCGGTTAAATCGAAGAAAGTAGAAAGCTCAAAACCTACTTTCAAACCACGTAAAGTCAAGAAA GTAATAACCGCCGACAGCAAGTATCGTGATCGAGCGGCCGAACGACGTGTAGGCGGAGGAAATGACTATGCTCAC GTGGAAGCCATCCGAGACGACTTTGAACGTCAAATCGCTGGTAATGAAGACCAAACGGACGTTGAAGAGAAGCGC AAATACTTGGGTGGAGATGGTGAACACTCTATTCTCGTCAAAGGTCTCGACATGGCACTTTTAGAGCAGAACAAA GCTCGGGTCGCGCAGGAGGAAACTGTAGATGACGACACTCTCGAACAAGTCTATCTCGAGGCTTCTTCATCTGCT ACCGTTCCCAAAAAGCGCACGCGGCAAGACCTCATCAAGGAACTCAAGCAAAAGCGATCTCGACAAGACGACCCT GATTCCAGTGCTACTCCCGAGTCACAAACACAGGCATCCACAATTGAGAAAGGAGATGCGTTAGAAGACGCGAAG AAGCAAGGAAAGTTCAAACCTATCGGCTTCAAGCCAATAGGTGCTCTAGAAGAGGGGAAGAAAAAAAAGAAGAAC AAGAATGGTGGAAATGTTAAAGAGGGTGGAGAGAGGAAAAAGAAAAAGCGTAAAGTTGCAAGCCCTGAAGCTGAG GTATCAAAGGCGAAAGTTCCATTGCCCCCCTCCACCGAAGACCCGCCACCTATCCCCACAAATCAATCAACTGCA AAGGTTAAAGAGCCGGAACCAGAACCTCTGTTGGAAGAGGATTTCGATATTTTTGCTGGTGCCGGTGATTATGAA GGTCTTGAGGTTGATGACGAAGAGGGCGAAGATGAAACAGAGCCTCCTGCTAAGTCAACATCTCAAGAGCCTGCA CCGGCTGGTTCGTCAAGAAAATGGATTGAAATGGAAGAAGAAGCACTTTCTAAGCCGATTCCTTTGCCGCATGAA GCGAATGACTCGAAGGGCTTACCTTCGCCGAACGAGACTCAGGGTAGAGATCCAAATAGGTCCGACGTTGAGATG AAAGGTGGAGCAGTGCCAGAAAACGAGGAAAATGAAGAACAGCGAACAATGCGATTAGAAGCTTTAGAAAGCTCT AATTTACCTTCAATACGAGATTTCCTAGCTATGGATGATGCCGCATTGGCAGCGGAGAAGCGGAAAAAGCGGAAA GAGAAGAAGAAATCGGCTGGTGGTCCTAAAAGCATGGAAGCGAAAGTCAATCGCGATTATCAGCGGCTGCAATCG TACACCAGCAAAAAAGAAGGCTCGGGGTCCCGGTAA
Gene	>AgabiH97\|092070 ATGGACCAGGTATCTATCTATTCTTCAAACTCTACCCCCCAGTTATAAGTACTCAATGCCTCCCTTAGGAATCAT TCAGACTTCTACTTCAATCAGGATCATCCCCGGGCGCCCCAGTTGGGTCCCGAGCAAATATCTCTTCCACCTCGG TTAAATCGTGAGCTTTCTTTGCGTTCGTGCTATTCAACAGAATGAGCTCAACTGATACGCAAAGGAAGAAAGTAG AAAGCTCAAAACCTACTTTCAAACCACGTAAAGTCAAGAAAGTAATAACCGCCGACAGCAAGTATCGTGATCGAG CGGCCGAACGACGTGTAGGCGGAGGAAATGACTATGCTCACGTATGCACGGTCCAAAAATTCACATATGACTGTC TAAAACTCCATATAGGTGGAAGCCATCCGAGACGACTTTGAACGTCAAATCGCTGGTAATGAAGACCAAACGGAC GTGAGTTTAAGAAATTTGCTGTCCAGATGAATGGTCCTCAATACATGACTACTTTATATAGGTTGAAGAGAAGCG CAAATACTTGGGTGGAGATGGTGAACACTCTATTCTCGTCAAAGGTCTCGACATGGCACTTTTAGAGCAGAACAA AGCTCGGGTCGCGCAGGAGGAAACTGTAGATGACGACACTCTCGAACAAGTCTATCTCGAGGCTTCTTCATCTGC TACCGTTCCCAAAAAGCGCACGCGGCAAGACCTCATCAAGGAACTCAAGCAAAAGCGATCTCGACAAGACGACCC TGATTCCAGTGCTACTCCCGAGTCACAAACACAGGCATCCACAATTGAGAAAGGAGATGCGTTAGAAGACGCGAA GAAGCAAGGAAAGTTCAAACCTATCGGCTTCAAGCCAATAGGTGCTCTAGAAGAGGGGAAGAAAAAAAAGAAGAA CAAGAATGGTGGAAATGTTAAAGAGGGTGGAGAGAGGAAAAAGAAAAAGCGTAAAGTTGCAAGCCCTGAAGCTGA GGTATCAAAGGCGAAAGTTCCATTGCCCCCCTCCACCGAAGACCCGCCACCTATCCCCACAAATCAATCAACTGC AAAGGTTAAAGAGCCGGAACCAGAACCTCTGTTGGAAGAGGATTTCGATATTTTTGCTGGTGCCGGTGATTATGA AGGTCTTGAGGTTGATGACGAAGAGGGCGAAGATGAAACAGAGCCTCCTGCTAAGTCAACATCTCAAGAGCCTGC ACCGGCTGGTTCGTCAAGAAAATGGATTGAAATGGAAGAAGAAGCACTTTCTAAGCCGATTCCTTTGCCGCATGA AGCGAATGACTCGAAGGGCTTACCTTCGCCGAACGAGACTCAGGGTAGAGATCCAAATAGGTCCGACGTTGAGAT GAAAGGTGGAGCAGTGCCAGAAAACGAGGAAAATGAAGAACAGCGAACAATGCGATTAGAAGCTTTAGAAAGCTC TAATTTACCTTCAATACGAGATTTCCTAGCTATGGATGATGCCGCATTGGCAGCGGAGAAGCGGAAAAAGCGGAA AGAGAAGAAGAAATCGGCTGGTGGTCCTAAAAGCATGGAAGCGAAAGTCAATCGCGATTATCAGCGGTAAGTAAT TATTATTGTTTGCTCCAGTTGCTTGCCTTGAACTATTCAATAGGCTGCAATCGTACACCAGCAAAAAAGAAGGCT CGGGGTCCCGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail