© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|091490 |
| Gene name | |
| Location | scaffold_6:850163..850862 |
| Strand | + |
| Gene length (bp) | 699 |
| Transcript length (bp) | 381 |
| Coding sequence length (bp) | 381 |
| Protein length (aa) | 127 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01780 | Ribosomal_L37ae | Ribosomal L37ae protein family | 1.1E-41 | 38 | 122 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54UG4|RL37A_DICDI | 60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1 | 35 | 124 | 2.0E-46 |
| sp|Q751L1|RL43_ASHGO | 60S ribosomal protein L43 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL43 PE=3 SV=1 | 35 | 126 | 4.0E-46 |
| sp|O61462|RL37A_CRYST | 60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3 | 35 | 126 | 1.0E-45 |
| sp|O61598|RL37A_OSTOS | 60S ribosomal protein L37a OS=Ostertagia ostertagi GN=rpl-37a PE=3 SV=3 | 35 | 125 | 1.0E-45 |
| sp|Q9VMU4|RL37A_DROME | 60S ribosomal protein L37a OS=Drosophila melanogaster GN=RpL37A PE=1 SV=3 | 35 | 125 | 2.0E-45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54UG4|RL37A_DICDI | 60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1 | 35 | 124 | 2.0E-46 |
| sp|Q751L1|RL43_ASHGO | 60S ribosomal protein L43 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL43 PE=3 SV=1 | 35 | 126 | 4.0E-46 |
| sp|O61462|RL37A_CRYST | 60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3 | 35 | 126 | 1.0E-45 |
| sp|O61598|RL37A_OSTOS | 60S ribosomal protein L37a OS=Ostertagia ostertagi GN=rpl-37a PE=3 SV=3 | 35 | 125 | 1.0E-45 |
| sp|Q9VMU4|RL37A_DROME | 60S ribosomal protein L37a OS=Drosophila melanogaster GN=RpL37A PE=1 SV=3 | 35 | 125 | 2.0E-45 |
| sp|P0CX26|RL43B_YEAST | 60S ribosomal protein L43-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL43B PE=1 SV=1 | 35 | 126 | 9.0E-45 |
| sp|P0CX25|RL43A_YEAST | 60S ribosomal protein L43-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL43A PE=1 SV=1 | 35 | 126 | 9.0E-45 |
| sp|Q6FRG6|RL43_CANGA | 60S ribosomal protein L43 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL43 PE=3 SV=1 | 35 | 126 | 1.0E-44 |
| sp|Q9XHE4|RL37A_GOSHI | 60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1 | 35 | 126 | 3.0E-43 |
| sp|P32046|RL37A_CHICK | 60S ribosomal protein L37a OS=Gallus gallus GN=RPL37A PE=3 SV=2 | 35 | 125 | 9.0E-43 |
| sp|Q5QM99|RL37A_ORYSJ | 60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1 | 35 | 126 | 1.0E-42 |
| sp|P61515|RL37P_RAT | Putative 60S ribosomal protein L37a OS=Rattus norvegicus GN=Rpl37a-ps1 PE=5 SV=2 | 35 | 125 | 1.0E-42 |
| sp|Q5RBF9|RL37A_PONAB | 60S ribosomal protein L37a OS=Pongo abelii GN=RPL37A PE=3 SV=3 | 35 | 125 | 1.0E-42 |
| sp|P61514|RL37A_MOUSE | 60S ribosomal protein L37a OS=Mus musculus GN=Rpl37a PE=1 SV=2 | 35 | 125 | 1.0E-42 |
| sp|P61513|RL37A_HUMAN | 60S ribosomal protein L37a OS=Homo sapiens GN=RPL37A PE=1 SV=2 | 35 | 125 | 1.0E-42 |
| sp|Q3MIC0|RL37A_BOVIN | 60S ribosomal protein L37a OS=Bos taurus GN=RPL37A PE=3 SV=3 | 35 | 125 | 1.0E-42 |
| sp|Q90YT0|RL37A_ICTPU | 60S ribosomal protein L37a OS=Ictalurus punctatus GN=rpl37a PE=3 SV=3 | 35 | 125 | 5.0E-42 |
| sp|Q9U2A8|RL37A_CAEEL | 60S ribosomal protein L37a OS=Caenorhabditis elegans GN=rpl-43 PE=3 SV=3 | 35 | 125 | 1.0E-41 |
| sp|Q7SZB4|RL37A_XENLA | 60S ribosomal protein L37a OS=Xenopus laevis GN=rpl37a PE=3 SV=3 | 35 | 125 | 1.0E-41 |
| sp|Q8RXU5|R37A2_ARATH | 60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=3 SV=1 | 35 | 126 | 3.0E-41 |
| sp|Q9ZRS8|RL37A_PSEMZ | 60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1 | 35 | 126 | 4.0E-41 |
| sp|Q9SRK6|R37A1_ARATH | Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV=1 | 35 | 126 | 4.0E-40 |
| sp|P43209|RL37A_BRARR | 60S ribosomal protein L37a OS=Brassica rapa subsp. rapa GN=RPL37A PE=3 SV=2 | 35 | 126 | 2.0E-39 |
| sp|A4S6Z4|RL37A_OSTLU | 60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1 | 35 | 125 | 4.0E-39 |
| sp|Q00VK4|RL37A_OSTTA | 60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2 | 35 | 125 | 3.0E-38 |
| sp|Q9Y0H7|RL37A_MYXGL | 60S ribosomal protein L37a (Fragment) OS=Myxine glutinosa GN=rpl37a PE=2 SV=1 | 42 | 125 | 2.0E-37 |
| sp|Q23G98|RL37A_TETTS | 60S ribosomal protein L37a OS=Tetrahymena thermophila (strain SB210) GN=RPL37A PE=1 SV=1 | 35 | 122 | 8.0E-37 |
| sp|D4AAZ6|RL37A_RAT | 60S ribosomal protein L37a OS=Rattus norvegicus GN=Rpl37a PE=1 SV=1 | 35 | 104 | 1.0E-33 |
| sp|O17307|RL37A_SCHMA | 60S ribosomal protein L37a (Fragment) OS=Schistosoma mansoni PE=2 SV=1 | 37 | 126 | 3.0E-33 |
| sp|O94686|RL43B_SCHPO | 60S ribosomal protein L43-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl4302 PE=3 SV=1 | 35 | 126 | 1.0E-32 |
| sp|O96184|RL37A_PLAF7 | 60S ribosomal protein L37a OS=Plasmodium falciparum (isolate 3D7) GN=RPL37A PE=1 SV=1 | 35 | 125 | 1.0E-32 |
| sp|Q9HGL8|RL43A_SCHPO | 60S ribosomal protein L43-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl4301 PE=3 SV=1 | 35 | 126 | 2.0E-32 |
| sp|A6NKH3|RL37L_HUMAN | Putative 60S ribosomal protein L37a-like protein OS=Homo sapiens GN=RPL37AP8 PE=5 SV=2 | 35 | 125 | 2.0E-28 |
| sp|P54051|RL37A_METJA | 50S ribosomal protein L37Ae OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpl37ae PE=3 SV=1 | 35 | 125 | 3.0E-18 |
| sp|Q8TZI4|RL37A_PYRFU | 50S ribosomal protein L37Ae OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl37ae PE=1 SV=1 | 39 | 114 | 2.0E-17 |
| sp|C6A452|RL37A_THESM | 50S ribosomal protein L37Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl37ae PE=3 SV=1 | 38 | 117 | 9.0E-17 |
| sp|Q8TYC3|RL37A_METKA | 50S ribosomal protein L37Ae OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl37ae PE=3 SV=1 | 38 | 122 | 1.0E-16 |
| sp|B8D6B7|RL37A_DESK1 | 50S ribosomal protein L37Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl37ae PE=3 SV=1 | 38 | 119 | 1.0E-16 |
| sp|Q6M0M1|RL37A_METMP | 50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain S2 / LL) GN=rpl37ae PE=3 SV=1 | 39 | 122 | 3.0E-16 |
| sp|A4FZT8|RL37A_METM5 | 50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl37ae PE=3 SV=1 | 39 | 122 | 3.0E-16 |
| sp|A5UNQ7|RL37A_METS3 | 50S ribosomal protein L37Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl37ae PE=3 SV=1 | 38 | 124 | 5.0E-16 |
| sp|A6VIN8|RL37A_METM7 | 50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl37ae PE=3 SV=1 | 39 | 122 | 5.0E-16 |
| sp|A9A848|RL37A_METM6 | 50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl37ae PE=3 SV=1 | 39 | 122 | 5.0E-16 |
| sp|O26777|RL37A_METTH | 50S ribosomal protein L37Ae OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpl37ae PE=3 SV=1 | 38 | 120 | 6.0E-16 |
| sp|A6URN7|RL37A_METVS | 50S ribosomal protein L37Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl37ae PE=3 SV=1 | 39 | 122 | 7.0E-16 |
| sp|Q9HIP0|RL37A_THEAC | 50S ribosomal protein L37Ae OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rpl37ae PE=3 SV=1 | 35 | 104 | 9.0E-16 |
| sp|Q2NEX3|RL37A_METST | 50S ribosomal protein L37Ae OS=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) GN=rpl37ae PE=3 SV=1 | 35 | 120 | 1.0E-15 |
| sp|C5A4Z4|RL37A_THEGJ | 50S ribosomal protein L37Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl37ae PE=3 SV=1 | 38 | 117 | 1.0E-15 |
| sp|Q5JDM6|RL37A_THEKO | 50S ribosomal protein L37Ae OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl37ae PE=3 SV=1 | 38 | 110 | 2.0E-15 |
| sp|Q9V202|RL37A_PYRAB | 50S ribosomal protein L37Ae OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpl37ae PE=3 SV=1 | 39 | 117 | 2.0E-15 |
| sp|O74106|RL37A_PYRHO | 50S ribosomal protein L37Ae OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rpl37ae PE=3 SV=2 | 39 | 117 | 3.0E-15 |
| sp|A6UTE9|RL37A_META3 | 50S ribosomal protein L37Ae OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl37ae PE=3 SV=1 | 38 | 122 | 5.0E-15 |
| sp|B6YTZ8|RL37A_THEON | 50S ribosomal protein L37Ae OS=Thermococcus onnurineus (strain NA1) GN=rpl37ae PE=3 SV=1 | 38 | 110 | 5.0E-15 |
| sp|Q97BZ3|RL37A_THEVO | 50S ribosomal protein L37Ae OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rpl37ae PE=3 SV=1 | 35 | 103 | 6.0E-15 |
| sp|P60619|RL37A_HALMA | 50S ribosomal protein L37Ae OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl37ae PE=1 SV=2 | 35 | 118 | 7.0E-15 |
| sp|Q6L225|RL37A_PICTO | 50S ribosomal protein L37Ae OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rpl37ae PE=3 SV=1 | 35 | 109 | 1.0E-14 |
| sp|Q9YC06|RL37A_AERPE | 50S ribosomal protein L37Ae OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl37ae PE=3 SV=1 | 38 | 119 | 2.0E-14 |
| sp|A1RSS8|RL37A_PYRIL | 50S ribosomal protein L37Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) GN=rpl37ae PE=3 SV=1 | 39 | 124 | 2.0E-14 |
| sp|Q8ZVN1|RL37A_PYRAE | 50S ribosomal protein L37Ae OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rpl37ae PE=3 SV=1 | 39 | 107 | 1.0E-13 |
| sp|Q74N55|RL37A_NANEQ | 50S ribosomal protein L37Ae OS=Nanoarchaeum equitans (strain Kin4-M) GN=rpl37ae PE=3 SV=1 | 39 | 103 | 2.0E-13 |
| sp|B1Y976|RL37A_PYRNV | 50S ribosomal protein L37Ae OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl37ae PE=3 SV=1 | 39 | 107 | 2.0E-13 |
| sp|O30179|RL37A_ARCFU | 50S ribosomal protein L37Ae OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rpl37ae PE=3 SV=1 | 38 | 117 | 1.0E-12 |
| sp|Q9HSG8|RL37A_HALSA | 50S ribosomal protein L37Ae OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpl37ae PE=3 SV=2 | 42 | 118 | 1.0E-11 |
| sp|B0R2Y1|RL37A_HALS3 | 50S ribosomal protein L37Ae OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl37ae PE=3 SV=1 | 42 | 118 | 1.0E-11 |
| sp|Q97ZQ3|RL37A_SULSO | 50S ribosomal protein L37Ae OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpl37ae PE=3 SV=2 | 40 | 104 | 3.0E-09 |
| sp|Q975H0|RL37A_SULTO | 50S ribosomal protein L37Ae OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpl37ae PE=3 SV=1 | 40 | 104 | 7.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0005840 | ribosome | Yes |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043229 | intracellular organelle | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0005575 | cellular_component | No |
| GO:0009058 | biosynthetic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0005198 | structural molecule activity | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0003674 | molecular_function | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|091490 MPCAVRDPPNVSPTVPNTDNRQDQRFANSNLPLKMTKRTKKVGITGKYGTRYGASLRKQVKKMEVSQHARYTCPF CGKDSVKRTAVGVWNCKACRKTIAGGAWTVTTTAAATVRSTIRRLREINEA* |
| Coding | >AgabiH97|091490 ATGCCTTGTGCTGTTCGGGATCCCCCGAACGTTTCGCCCACGGTACCCAACACTGACAATCGTCAAGACCAGCGC TTCGCCAACAGTAATCTCCCTCTCAAAATGACAAAACGCACAAAGAAGGTCGGCATCACCGGAAAGTATGGTACC CGTTATGGTGCCTCCTTAAGGAAACAAGTAAAGAAGATGGAAGTTTCTCAGCATGCTAGATACACATGCCCCTTC TGCGGCAAGGACTCCGTAAAGAGGACTGCTGTGGGTGTCTGGAACTGCAAAGCCTGCAGAAAGACTATCGCTGGT GGAGCTTGGACTGTAACGACGACCGCTGCTGCTACTGTGCGCAGCACGATTCGTCGGCTGCGTGAGATCAATGAG GCTTAA |
| Transcript | >AgabiH97|091490 ATGCCTTGTGCTGTTCGGGATCCCCCGAACGTTTCGCCCACGGTACCCAACACTGACAATCGTCAAGACCAGCGC TTCGCCAACAGTAATCTCCCTCTCAAAATGACAAAACGCACAAAGAAGGTCGGCATCACCGGAAAGTATGGTACC CGTTATGGTGCCTCCTTAAGGAAACAAGTAAAGAAGATGGAAGTTTCTCAGCATGCTAGATACACATGCCCCTTC TGCGGCAAGGACTCCGTAAAGAGGACTGCTGTGGGTGTCTGGAACTGCAAAGCCTGCAGAAAGACTATCGCTGGT GGAGCTTGGACTGTAACGACGACCGCTGCTGCTACTGTGCGCAGCACGATTCGTCGGCTGCGTGAGATCAATGAG GCTTAA |
| Gene | >AgabiH97|091490 ATGCCTTGTGGTTACTTTACTACACCATCACCATCATGACAAGATCAGATCTCGTGGCTGATCGAAAACTATACA GCTGTTCGGGATCCCCCGAACGTTTCGCCCACGGTACCCAACACTGACAATCGTCAAGACCAGCGCTTCGCCAAC AGTAATCTCCCTCTCAAAATGGTCAGTTTCTCTTGTGTTCCCGACTCATGTACCTTTACTCTGGCACAATGCTAA CCATACTTGATTACTATAGACAAAACGCACAAAGAAGGTCGGCATCACCGGAAAGTATGGTACCGTAAGTATCGC TCTTCAACCTACCGTCCAAAACACTGCAAATGAAACATTAAATCTGGTCTTTAGCGTTATGGTGCCTCCTTAAGG AAACAAGTAAAGAAGATGGAAGTTTCTCAGCATGCTAGATACACATGCCCCTTCTGCGGCAAGGTATGTTACATT CAAATACGGTCTTCTCTACGATTATATTGATTGTTTGGTGTTGTAGGACTCCGTAAAGAGGACTGCTGTGGGTGT CTGGAACTGCAAAGCCTGCAGAAAGACTATCGCTGGTGGAGCTTGGACTGTAACGACGACCGCTGCTGCTACTGT GCGCAGGTATGTGTTGCATCATATCCATAATTTGGCTTTGTATTAACAGTTAATCTTTATAGCACGATTCGTCGG CTGCGTGAGATCAATGAGGCTTAA |