Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|091220
Gene name
Locationscaffold_6:773934..775187
Strand-
Gene length (bp)1253
Transcript length (bp)897
Coding sequence length (bp)897
Protein length (aa) 299

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 1.3E-06 3 40
PF00646 F-box F-box domain 1.2E-05 3 39

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6169 0.4961 0.0865 0.1771 0.3359 0.041 0.1849 0.1331 0.2055 0.0302

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup13346
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|378800
Agaricus bisporus var bisporus H97 AgabiH97|091220 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|091220
MITSLPSEILFKILVNLGSLELARISGVCRFWKALLENDTYLRCVCFKEPSPYFYVEGCEPILAPGPQDARIRFH
PIIGRVYYQMGEAMSSIRIRDPKNHGPCLTDLTIQDHYATIPRTTRLDIEIISEENQNNRCKTVLPGIKLSISNP
AGIRLRDFFSNIVAETAQMCDLVAYASGGICHQRMQPSLTFLKKAEILGKCKFYAGIESTKISRDGAINVKLCTV
AKVKLHLDNVKHCQSSVLKYQSGSNKATLTSILFRGAGKFVALSLYIHSCITRVVGRLLSHTVILIQENETMN*
Coding >AgabiH97|091220
ATGATCACCTCTCTACCTTCTGAAATTCTTTTCAAAATTCTCGTAAACCTCGGCAGCCTTGAACTCGCCAGGATA
TCTGGTGTTTGTCGATTTTGGAAAGCCCTCCTAGAAAATGATACCTACTTGCGCTGTGTATGCTTCAAGGAGCCC
TCTCCATATTTTTACGTTGAAGGATGCGAACCTATACTGGCGCCAGGCCCTCAAGACGCTCGCATAAGATTCCAC
CCAATTATAGGACGTGTATATTATCAAATGGGAGAAGCCATGTCTTCTATCCGTATCCGTGACCCCAAGAACCAC
GGTCCTTGTCTTACAGATCTCACTATCCAAGACCATTATGCCACAATCCCTCGCACCACTCGCCTGGATATTGAA
ATTATATCAGAGGAGAATCAAAACAACCGCTGCAAAACAGTCCTTCCAGGGATCAAACTTTCTATATCAAACCCA
GCCGGCATTCGATTACGCGACTTCTTTTCTAACATTGTTGCAGAAACCGCACAAATGTGCGATCTGGTCGCTTAT
GCCAGCGGGGGTATTTGCCATCAACGGATGCAACCTTCTCTCACATTTTTAAAGAAGGCAGAGATTCTGGGGAAA
TGCAAGTTTTATGCAGGCATTGAAAGCACGAAAATCAGTAGAGACGGTGCTATCAACGTTAAGCTATGCACGGTG
GCAAAAGTGAAACTCCATCTAGATAATGTCAAACACTGTCAATCCTCGGTCTTAAAATATCAGTCAGGTTCGAAC
AAAGCGACTTTGACTTCGATATTGTTTCGTGGCGCCGGAAAATTTGTTGCTTTATCTCTATACATTCACTCCTGC
ATCACTCGCGTAGTTGGCCGACTCCTTTCGCATACTGTGATTCTGATTCAAGAAAATGAGACGATGAATTAA
Transcript >AgabiH97|091220
ATGATCACCTCTCTACCTTCTGAAATTCTTTTCAAAATTCTCGTAAACCTCGGCAGCCTTGAACTCGCCAGGATA
TCTGGTGTTTGTCGATTTTGGAAAGCCCTCCTAGAAAATGATACCTACTTGCGCTGTGTATGCTTCAAGGAGCCC
TCTCCATATTTTTACGTTGAAGGATGCGAACCTATACTGGCGCCAGGCCCTCAAGACGCTCGCATAAGATTCCAC
CCAATTATAGGACGTGTATATTATCAAATGGGAGAAGCCATGTCTTCTATCCGTATCCGTGACCCCAAGAACCAC
GGTCCTTGTCTTACAGATCTCACTATCCAAGACCATTATGCCACAATCCCTCGCACCACTCGCCTGGATATTGAA
ATTATATCAGAGGAGAATCAAAACAACCGCTGCAAAACAGTCCTTCCAGGGATCAAACTTTCTATATCAAACCCA
GCCGGCATTCGATTACGCGACTTCTTTTCTAACATTGTTGCAGAAACCGCACAAATGTGCGATCTGGTCGCTTAT
GCCAGCGGGGGTATTTGCCATCAACGGATGCAACCTTCTCTCACATTTTTAAAGAAGGCAGAGATTCTGGGGAAA
TGCAAGTTTTATGCAGGCATTGAAAGCACGAAAATCAGTAGAGACGGTGCTATCAACGTTAAGCTATGCACGGTG
GCAAAAGTGAAACTCCATCTAGATAATGTCAAACACTGTCAATCCTCGGTCTTAAAATATCAGTCAGGTTCGAAC
AAAGCGACTTTGACTTCGATATTGTTTCGTGGCGCCGGAAAATTTGTTGCTTTATCTCTATACATTCACTCCTGC
ATCACTCGCGTAGTTGGCCGACTCCTTTCGCATACTGTGATTCTGATTCAAGAAAATGAGACGATGAATTAA
Gene >AgabiH97|091220
ATGATCACCTCTCTACCTTCTGAAATTCTTTTCAAAATTCTCGTAAACCTCGGCAGCCTTGAACTCGCCAGGATA
TCTGGTGTTTGTCGATTTTGGAAAGCCCTCCTAGAAAATGATACCTACTTGCGCTGTGTATGCTTCAAGGAGCCC
TCTCCATATTTTTACGTTGAAGGTATCTCATTCGGCAACTTGCCATTTTATACTGAAGGTTAATCAGCCGTTCTC
AAGGATGCGAACCTATACTGGCGCCAGGCCCTCAAGACGCTCGCATAAGAGTATAGCGTATCTACCTCTTCCTTT
CTCACTCTCTGGCTCACCCTTGCCCCAGTTCCACCCAATTATAGGACGTGTATATTATCAAATGGGAGAAGCCAT
GTCTTCTATCCGTATCCGTGACCCCAAGAACCACGGTCCTTGTCTTACAGATCTCACTATCCAAGACCATTATGC
CACAATCCCTCGCACCACTCGCCTGGATATTGAAATTATATCAGAGGAGAATCAAAACAACCGCTGCAAAACAGT
CCTTCCAGGGATCAAACTTTCTATATCAAACCCAGCCGGCATTCGATTACGCGACTTCTTTTCTAACATTGTTGC
AGAGTAGGGAAAAGGGTTTATGTCCACTGCTCTCTACTCACATCTCAAATTTTCAGAACCGCACAAATGTGCGAT
CTGGTCGCTTATGCCAGCGGGGGTATTTGCCATCAACGGATGCAACCTTCTCTCACATTTTTAAAGAAGGCAGAG
ATTCTGGGGAAATGCAAGTACGTATTTCACATTCAGGAAAAATTGTATCCTAGTCCAAACACATCCGTAGGTTTT
ATGCAGGCATTGAAAGCACGAAAATCAGTAGAGACGGTGCTATCAACGTTAAGCTATGCACGGTGGCAAAAGTGT
GATTGTACCCTCGGTATCTCATGCCGATGCATTTGCGTTGCTCTCCTTATCCGGAAACAACCATAACTATGAAAG
GAAACTCCATCTAGATAATGTCAAACACTGTCAATCCTCGGTCTTAAAATATCAGTCAGGTTCGAACAAAGCGAC
TTTGACTTCGATATTGTTTCGTGGCGCCGGAAAATTTGTTGCTTTATCTCTATACATTCACTCCTGCATCACTCG
CGTAGTTGGCCGACTCCTTTCGCATACTGTGATTCTGATTCAAGAAAATGAGACGATGAGTGCGAAAGTCTGTAA
TTAATAAATCAATAACGTCTCACACTGTCTCCTTCGGCGTCGCCGTAGATTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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