Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|090060
Gene name
Locationscaffold_6:450361..451604
Strand-
Gene length (bp)1243
Transcript length (bp)1104
Coding sequence length (bp)1104
Protein length (aa) 368

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase 1.0E-35 148 357
PF13649 Methyltransf_25 Methyltransferase domain 2.7E-07 150 204
PF02475 Met_10 Met-10+ like-protein 4.7E-07 136 209
PF08241 Methyltransf_11 Methyltransferase domain 2.1E-04 151 204

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q96RS0|TGS1_HUMAN Trimethylguanosine synthase OS=Homo sapiens GN=TGS1 PE=1 SV=3 96 359 9.0E-56
sp|Q923W1|TGS1_MOUSE Trimethylguanosine synthase OS=Mus musculus GN=Tgs1 PE=1 SV=2 96 359 2.0E-55
sp|P85107|TGS1_RAT Trimethylguanosine synthase OS=Rattus norvegicus GN=Tgs1 PE=1 SV=1 96 359 6.0E-54
sp|Q09814|TGS1_SCHPO Trimethylguanosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tgs1 PE=1 SV=3 98 317 1.0E-33
sp|Q12052|TGS1_YEAST Trimethylguanosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TGS1 PE=1 SV=1 102 317 3.0E-20

GO

GO Term Description Terminal node
GO:0008168 methyltransferase activity Yes
GO:0009452 7-methylguanosine RNA capping Yes
GO:0001510 RNA methylation Yes
GO:0009451 RNA modification No
GO:0016070 RNA metabolic process No
GO:0006396 RNA processing No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0008150 biological_process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0008152 metabolic process No
GO:0043412 macromolecule modification No
GO:0046483 heterocycle metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0032259 methylation No
GO:0043414 macromolecule methylation No
GO:0006807 nitrogen compound metabolic process No
GO:0016740 transferase activity No
GO:0036260 RNA capping No
GO:0003674 molecular_function No
GO:0044238 primary metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0009987 cellular process No
GO:0003824 catalytic activity No
GO:0044237 cellular metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0016741 transferase activity, transferring one-carbon groups No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3351 0.9462 0.0212 0.0113 0.3084 0.0012 0.0397 0.0142 0.025 0.0147

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 24.87 13.41 36.32
Initials Initials knots 20.98 11.05 30.90
Pileal_Stipeal_center Stage I stipe center 24.45 13.11 35.80
Pileal_Stipeal_shell Stage I stipe shell 30.78 16.96 44.60
DIF_stipe_center Stage II stipe center 25.44 13.76 37.12
DIF_stipe_shell Stage II stipe shell 23.84 12.75 34.93
DIF_stipe_skin Stage II stipe skin 25.36 13.69 37.03
DIF_cap_skin Stage II cap skin 30.76 17.04 44.47
DIF_cap_tissue Stage II cap tissue 28.43 15.40 41.46
DIF_gill_tissue Stage II gill tissue 31.12 17.25 45.00
YFB_stipe_center Young fruiting body stipe center 33.09 18.37 47.81
YFB_stipe_shell Young fruiting body stipe shell 26.89 14.61 39.16
YFB_stipe_skin Young fruiting body stipe skin 31.45 17.46 45.44
YFB_cap_skin Young fruiting body cap skin 28.58 15.68 41.48
YFB_cap_tissue Young fruiting body cap tissue 19.60 10.24 28.97
YFB_gill_tissue Young fruiting body gill tissue 30.51 16.89 44.13
YFB_veil Young fruiting body veil 30.44 16.83 44.05

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.594698 no
Casing YFB_stipe_center 0.454694 no
Casing YFB_stipe_shell 0.890815 no
Casing YFB_stipe_skin 0.573594 no
Casing YFB_cap_skin 0.775726 no
Casing YFB_cap_tissue 0.577809 no
Casing YFB_gill_tissue 0.639833 no
Casing YFB_veil 0.642998 no
Casing Initials 0.727344 no
Casing Pileal_Stipeal_center 0.978181 no
Casing Pileal_Stipeal_shell 0.612095 no
Casing DIF_stipe_center 0.970864 no
Casing DIF_stipe_shell 0.944038 no
Casing DIF_stipe_skin 0.974287 no
Casing DIF_cap_skin 0.619572 no
Casing DIF_cap_tissue 0.792677 no
DIF_gill_tissue YFB_stipe_center 0.914359 no
DIF_gill_tissue YFB_stipe_shell 0.762880 no
DIF_gill_tissue YFB_stipe_skin 0.986598 no
DIF_gill_tissue YFB_cap_skin 0.874839 no
DIF_gill_tissue YFB_cap_tissue 0.160121 no
DIF_gill_tissue YFB_gill_tissue 0.974385 no
DIF_gill_tissue YFB_veil 0.972375 no
YFB_stipe_center YFB_stipe_shell 0.636432 no
YFB_stipe_center YFB_stipe_skin 0.932040 no
YFB_stipe_center YFB_cap_skin 0.759155 no
YFB_stipe_center YFB_cap_tissue 0.101542 no
YFB_stipe_center YFB_gill_tissue 0.884352 no
YFB_stipe_center YFB_veil 0.881719 no
YFB_stipe_shell YFB_stipe_skin 0.745775 no
YFB_stipe_shell YFB_cap_skin 0.917482 no
YFB_stipe_shell YFB_cap_tissue 0.414173 no
YFB_stipe_shell YFB_gill_tissue 0.804203 no
YFB_stipe_shell YFB_veil 0.808900 no
YFB_stipe_skin YFB_cap_skin 0.854683 no
YFB_stipe_skin YFB_cap_tissue 0.147277 no
YFB_stipe_skin YFB_gill_tissue 0.959769 no
YFB_stipe_skin YFB_veil 0.958192 no
YFB_cap_skin YFB_cap_tissue 0.292985 no
YFB_cap_skin YFB_gill_tissue 0.908698 no
YFB_cap_skin YFB_veil 0.912764 no
YFB_cap_tissue YFB_gill_tissue 0.188653 no
YFB_cap_tissue YFB_veil 0.189886 no
YFB_gill_tissue YFB_veil 0.996674 no
Initials DIF_gill_tissue 0.258617 no
Initials YFB_stipe_center 0.172056 no
Initials YFB_stipe_shell 0.554291 no
Initials YFB_stipe_skin 0.243209 no
Initials YFB_cap_skin 0.416825 no
Initials YFB_cap_tissue 0.912495 no
Initials YFB_gill_tissue 0.292131 no
Initials YFB_veil 0.295530 no
Initials Pileal_Stipeal_center 0.756560 no
Initials Pileal_Stipeal_shell 0.271154 no
Initials DIF_stipe_center 0.676018 no
Initials DIF_stipe_shell 0.809147 no
Initials DIF_stipe_skin 0.678558 no
Initials DIF_cap_skin 0.276718 no
Initials DIF_cap_tissue 0.446272 no
Pileal_Stipeal_center DIF_gill_tissue 0.549543 no
Pileal_Stipeal_center YFB_stipe_center 0.418972 no
Pileal_Stipeal_center YFB_stipe_shell 0.860717 no
Pileal_Stipeal_center YFB_stipe_skin 0.530001 no
Pileal_Stipeal_center YFB_cap_skin 0.740828 no
Pileal_Stipeal_center YFB_cap_tissue 0.610881 no
Pileal_Stipeal_center YFB_gill_tissue 0.596755 no
Pileal_Stipeal_center YFB_veil 0.600155 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.571264 no
Pileal_Stipeal_center DIF_stipe_center 0.948803 no
Pileal_Stipeal_center DIF_stipe_shell 0.965841 no
Pileal_Stipeal_center DIF_stipe_skin 0.952047 no
Pileal_Stipeal_center DIF_cap_skin 0.576613 no
Pileal_Stipeal_center DIF_cap_tissue 0.759610 no
Pileal_Stipeal_shell DIF_gill_tissue 0.985119 no
Pileal_Stipeal_shell YFB_stipe_center 0.897539 no
Pileal_Stipeal_shell YFB_stipe_shell 0.790008 no
Pileal_Stipeal_shell YFB_stipe_skin 0.972996 no
Pileal_Stipeal_shell YFB_cap_skin 0.894478 no
Pileal_Stipeal_shell YFB_cap_tissue 0.170751 no
Pileal_Stipeal_shell YFB_gill_tissue 0.988451 no
Pileal_Stipeal_shell YFB_veil 0.985568 no
Pileal_Stipeal_shell DIF_stipe_center 0.669500 no
Pileal_Stipeal_shell DIF_stipe_shell 0.521971 no
Pileal_Stipeal_shell DIF_stipe_skin 0.659480 no
Pileal_Stipeal_shell DIF_cap_skin 0.998426 no
Pileal_Stipeal_shell DIF_cap_tissue 0.888742 no
DIF_stipe_center DIF_gill_tissue 0.648298 no
DIF_stipe_center YFB_stipe_center 0.505497 no
DIF_stipe_center YFB_stipe_shell 0.925892 no
DIF_stipe_center YFB_stipe_skin 0.624647 no
DIF_stipe_center YFB_cap_skin 0.819899 no
DIF_stipe_center YFB_cap_tissue 0.528877 no
DIF_stipe_center YFB_gill_tissue 0.689007 no
DIF_stipe_center YFB_veil 0.693368 no
DIF_stipe_center DIF_stipe_shell 0.912356 no
DIF_stipe_center DIF_stipe_skin 0.995232 no
DIF_stipe_center DIF_cap_skin 0.671979 no
DIF_stipe_center DIF_cap_tissue 0.836849 no
DIF_stipe_shell DIF_gill_tissue 0.494559 no
DIF_stipe_shell YFB_stipe_center 0.362644 no
DIF_stipe_shell YFB_stipe_shell 0.816286 no
DIF_stipe_shell YFB_stipe_skin 0.475834 no
DIF_stipe_shell YFB_cap_skin 0.684468 no
DIF_stipe_shell YFB_cap_tissue 0.665751 no
DIF_stipe_shell YFB_gill_tissue 0.536942 no
DIF_stipe_shell YFB_veil 0.542795 no
DIF_stipe_shell DIF_stipe_skin 0.914572 no
DIF_stipe_shell DIF_cap_skin 0.519162 no
DIF_stipe_shell DIF_cap_tissue 0.704331 no
DIF_stipe_skin DIF_gill_tissue 0.640450 no
DIF_stipe_skin YFB_stipe_center 0.500103 no
DIF_stipe_skin YFB_stipe_shell 0.921415 no
DIF_stipe_skin YFB_stipe_skin 0.617888 no
DIF_stipe_skin YFB_cap_skin 0.814343 no
DIF_stipe_skin YFB_cap_tissue 0.536380 no
DIF_stipe_skin YFB_gill_tissue 0.681587 no
DIF_stipe_skin YFB_veil 0.686330 no
DIF_stipe_skin DIF_cap_skin 0.664782 no
DIF_stipe_skin DIF_cap_tissue 0.831718 no
DIF_cap_skin DIF_gill_tissue 0.983711 no
DIF_cap_skin YFB_stipe_center 0.895917 no
DIF_cap_skin YFB_stipe_shell 0.787449 no
DIF_cap_skin YFB_stipe_skin 0.971168 no
DIF_cap_skin YFB_cap_skin 0.895973 no
DIF_cap_skin YFB_cap_tissue 0.172056 no
DIF_cap_skin YFB_gill_tissue 0.989064 no
DIF_cap_skin YFB_veil 0.986025 no
DIF_cap_skin DIF_cap_tissue 0.889398 no
DIF_cap_tissue DIF_gill_tissue 0.871735 no
DIF_cap_tissue YFB_stipe_center 0.753645 no
DIF_cap_tissue YFB_stipe_shell 0.927079 no
DIF_cap_tissue YFB_stipe_skin 0.855184 no
DIF_cap_tissue YFB_cap_skin 0.992590 no
DIF_cap_tissue YFB_cap_tissue 0.309634 no
DIF_cap_tissue YFB_gill_tissue 0.904295 no
DIF_cap_tissue YFB_veil 0.908837 no

Orthologs

Orthofinder run ID1
Orthogroup5214
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|375200
Agaricus bisporus var bisporus H97 AgabiH97|090060 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|20_48

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|090060
MGKRKSRTGMTGLSRFISALNEGESGTQPSISTNSVDPAVSAHEQNDLTMKEVNGETNTDSASAPIFTSVATISK
KQKIIPHYDATGLVPTYTNEAMVPDHLKKYFSQRTRYFSLYDTPPGCLLDEEGWYSVTPERVANQIAERCRCDVV
LDAFCGVGGNTIAFAKTCERVIALDTNPTRLALARHNAQIYGVADRIEFIQADYISFARAYLSSFSTPSPSSNTS
TPPRTKTRKIDVVFLSPPWGGPSYLSGSPSHDIVNNVAKDNLPQTDGQDSHPTYSFSSIQPIHGKDLFTLTRRIT
SNIAYYLPRNTDLPEISDLLNATDDHGRSVKLSGERIEVEEEWMGSKLKALTCYFGGLVAGQEDLFS*
Coding >AgabiH97|090060
ATGGGCAAACGTAAATCAAGGACTGGGATGACTGGGCTGTCGCGTTTTATCAGTGCTTTGAATGAAGGAGAGTCC
GGGACACAACCCTCGATCTCAACGAACTCTGTCGACCCAGCTGTCTCGGCTCACGAGCAGAACGATCTTACAATG
AAAGAAGTTAATGGCGAAACAAACACAGACTCTGCGTCAGCGCCAATCTTTACTTCTGTCGCAACAATATCGAAG
AAACAAAAAATCATTCCTCACTATGACGCGACCGGTCTCGTACCCACATATACCAACGAAGCTATGGTCCCAGAT
CATCTCAAGAAATACTTCTCTCAGCGAACACGATATTTTTCGTTATACGATACGCCGCCTGGATGCCTTCTCGAT
GAAGAAGGATGGTACAGCGTGACACCTGAGAGGGTTGCAAATCAAATAGCTGAGCGATGTCGATGCGACGTCGTT
TTAGATGCTTTCTGCGGTGTCGGTGGGAATACTATCGCTTTTGCCAAAACTTGCGAACGAGTGATTGCGCTGGAT
ACCAATCCCACGAGGTTAGCGCTGGCGAGGCACAACGCTCAGATATACGGCGTTGCAGATCGTATAGAATTTATC
CAAGCAGATTATATTTCATTTGCCCGCGCATATCTTTCCTCGTTCTCGACCCCGTCGCCGTCATCAAATACCTCG
ACGCCGCCACGAACTAAAACAAGAAAGATTGACGTCGTGTTTCTCAGTCCTCCGTGGGGTGGCCCTTCCTACCTC
TCAGGTTCACCCAGCCATGACATCGTCAACAACGTTGCCAAGGATAATCTCCCTCAGACTGATGGTCAAGATTCA
CACCCCACTTATTCCTTTTCATCTATTCAGCCTATTCACGGGAAAGATCTTTTTACTCTCACACGCAGAATCACA
TCAAACATTGCATATTATTTACCTCGCAACACTGATCTTCCAGAAATCAGTGATTTGTTAAATGCTACCGATGAT
CATGGCCGTTCGGTAAAGTTATCGGGAGAGCGGATTGAGGTTGAAGAGGAGTGGATGGGGAGTAAGCTGAAAGCT
TTGACGTGTTATTTTGGTGGGCTTGTCGCCGGACAGGAAGATTTGTTCTCTTAG
Transcript >AgabiH97|090060
ATGGGCAAACGTAAATCAAGGACTGGGATGACTGGGCTGTCGCGTTTTATCAGTGCTTTGAATGAAGGAGAGTCC
GGGACACAACCCTCGATCTCAACGAACTCTGTCGACCCAGCTGTCTCGGCTCACGAGCAGAACGATCTTACAATG
AAAGAAGTTAATGGCGAAACAAACACAGACTCTGCGTCAGCGCCAATCTTTACTTCTGTCGCAACAATATCGAAG
AAACAAAAAATCATTCCTCACTATGACGCGACCGGTCTCGTACCCACATATACCAACGAAGCTATGGTCCCAGAT
CATCTCAAGAAATACTTCTCTCAGCGAACACGATATTTTTCGTTATACGATACGCCGCCTGGATGCCTTCTCGAT
GAAGAAGGATGGTACAGCGTGACACCTGAGAGGGTTGCAAATCAAATAGCTGAGCGATGTCGATGCGACGTCGTT
TTAGATGCTTTCTGCGGTGTCGGTGGGAATACTATCGCTTTTGCCAAAACTTGCGAACGAGTGATTGCGCTGGAT
ACCAATCCCACGAGGTTAGCGCTGGCGAGGCACAACGCTCAGATATACGGCGTTGCAGATCGTATAGAATTTATC
CAAGCAGATTATATTTCATTTGCCCGCGCATATCTTTCCTCGTTCTCGACCCCGTCGCCGTCATCAAATACCTCG
ACGCCGCCACGAACTAAAACAAGAAAGATTGACGTCGTGTTTCTCAGTCCTCCGTGGGGTGGCCCTTCCTACCTC
TCAGGTTCACCCAGCCATGACATCGTCAACAACGTTGCCAAGGATAATCTCCCTCAGACTGATGGTCAAGATTCA
CACCCCACTTATTCCTTTTCATCTATTCAGCCTATTCACGGGAAAGATCTTTTTACTCTCACACGCAGAATCACA
TCAAACATTGCATATTATTTACCTCGCAACACTGATCTTCCAGAAATCAGTGATTTGTTAAATGCTACCGATGAT
CATGGCCGTTCGGTAAAGTTATCGGGAGAGCGGATTGAGGTTGAAGAGGAGTGGATGGGGAGTAAGCTGAAAGCT
TTGACGTGTTATTTTGGTGGGCTTGTCGCCGGACAGGAAGATTTGTTCTCTTAG
Gene >AgabiH97|090060
ATGGGCAAACGTAAATCAAGGACTGGGATGACTGGGCTGTCGCGTTTTATCAGTGCTTTGAATGAAGGAGAGTCC
GGGACACAACCCTCGATCTCAACGAACTCTGTCGACCCAGCTGTCTCGGCTCACGAGCAGAACGATCTTACAATG
AAAGAAGTTAATGGCGAAACAAACACAGACTCTGCGTCAGCGCCAATCTTTACTTCTGTCGCAACAATATCGAAG
AAACAAAAAATCATTCCTCACTATGACGCGACCGGTCTCGTACCCACATATACCAACGAAGCTATGGTCCCAGAT
CATCTCAAGAAATGTCCGTGCTTGTCATAGGGTTCTTAACGTCGCTTAAAACGACAAACTCATGCCACTTGTATT
GGTTGCCTCCGCTTGTAGACTTCTCTCAGCGAACACGATATTTTTCGTTATACGATACGCCGCCTGGATGCCTTC
TCGATGAAGAAGGATGGTACAGCGTGACACCTGAGAGGGTTGCAAATCAAATAGCTGAGCGATGTCGATGCGACG
TCGTTTTAGATGCTTTCTGCGGTGTCGGTGGGAATACTATCGCTTTTGCCAAAACTTGCGAACGAGGTTTGGAGG
ACAAATTTATCTTTTTTTTTTACCTTCAGCTGAGGCTCGCCCTTTTCTAGTGATTGCGCTGGATACCAATCCCAC
GAGGTTAGCGCTGGCGAGGCACAACGCTCAGATATACGGCGTTGCAGATCGTATAGAATTTATCCAAGCAGATTA
TATTTCATTTGCCCGCGCATATCTTTCCTCGTTCTCGACCCCGTCGCCGTCATCAAATACCTCGACGCCGCCACG
AACTAAAACAAGAAAGATTGACGTCGTGTTTCTCAGTCCTCCGTGGGGTGGCCCTTCCTACCTCTCAGGTTCACC
CAGCCATGACATCGTCAACAACGTTGCCAAGGATAATCTCCCTCAGACTGATGGTCAAGATTCACACCCCACTTA
TTCCTTTTCATCTATTCAGCCTATTCACGGGAAAGATCTTTTTACTCTCACACGCAGAATCACATCAAACATTGC
ATATTATTTACCTCGCAACACTGATCTTCCAGAAATCAGTGATTTGTTAAATGCTACCGATGATCATGGCCGTTC
GGTAAAGTTATCGGGAGAGCGGATTGAGGTTGAAGAGGAGTGGATGGGGAGTAAGCTGAAAGCTTTGACGTGTTA
TTTTGGTGGGCTTGTCGCCGGACAGGAAGATTTGTTCTCTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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