Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|089690
Gene name
Location	scaffold_6:345651..346356
Strand	-
Gene length (bp)	705
Transcript length (bp)	480
Coding sequence length (bp)	480
Protein length (aa)	160

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00383	dCMP_cyt_deam_1	Cytidine and deoxycytidylate deaminase zinc-binding region	3.8E-15	12	107
PF08211	dCMP_cyt_deam_2	Cytidine and deoxycytidylate deaminase zinc-binding region	2.6E-12	13	77

Swissprot hits

GO

GO Term	Description	Terminal node
GO:0008270	zinc ion binding	Yes
GO:0004126	cytidine deaminase activity	Yes
GO:0009972	cytidine deamination	Yes
GO:0008152	metabolic process	No
GO:0055086	nucleobase-containing small molecule metabolic process	No
GO:0072527	pyrimidine-containing compound metabolic process	No
GO:0046087	cytidine metabolic process	No
GO:0046131	pyrimidine ribonucleoside metabolic process	No
GO:0072529	pyrimidine-containing compound catabolic process	No
GO:0034656	nucleobase-containing small molecule catabolic process	No
GO:0044281	small molecule metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0009056	catabolic process	No
GO:0008150	biological_process	No
GO:1901658	glycosyl compound catabolic process	No
GO:0071704	organic substance metabolic process	No
GO:1901565	organonitrogen compound catabolic process	No
GO:0043169	cation binding	No
GO:0019239	deaminase activity	No
GO:0009119	ribonucleoside metabolic process	No
GO:0044248	cellular catabolic process	No
GO:0046872	metal ion binding	No
GO:1901564	organonitrogen compound metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0043167	ion binding	No
GO:0005488	binding	No
GO:0016787	hydrolase activity	No
GO:0046135	pyrimidine nucleoside catabolic process	No
GO:1901657	glycosyl compound metabolic process	No
GO:0044270	cellular nitrogen compound catabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0019439	aromatic compound catabolic process	No
GO:0044237	cellular metabolic process	No
GO:0046133	pyrimidine ribonucleoside catabolic process	No
GO:0003824	catalytic activity	No
GO:0009116	nucleoside metabolic process	No
GO:0009987	cellular process	No
GO:0042454	ribonucleoside catabolic process	No
GO:1901136	carbohydrate derivative catabolic process	No
GO:0006213	pyrimidine nucleoside metabolic process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0044238	primary metabolic process	No
GO:0009164	nucleoside catabolic process	No
GO:0006216	cytidine catabolic process	No
GO:0034655	nucleobase-containing compound catabolic process	No
GO:0003674	molecular_function	No
GO:0046700	heterocycle catabolic process	No
GO:1901135	carbohydrate derivative metabolic process	No
GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	No
GO:0006807	nitrogen compound metabolic process	No
GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	No
GO:0044282	small molecule catabolic process	No
GO:1901361	organic cyclic compound catabolic process	No
GO:1901575	organic substance catabolic process	No
GO:0046483	heterocycle metabolic process	No
GO:0046914	transition metal ion binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|089690 MSSTAWTMSLEDRKRLIEAAFEAKNGTYSPYSKFPVGAALMAADGSIIKGANIENASYGATICAERTALVKAISE GVRSFVALAVTSNVKSAISPCGICRQFIREFCSLDMPILLVPGDYPQAGKSEPGYSEGGVRDTTLGELLPMSFGP EDLELPRRK*
Coding	>AgabiH97|089690 ATGAGTTCCACGGCTTGGACAATGTCTCTTGAAGACCGAAAGAGGCTCATTGAAGCTGCATTCGAAGCGAAAAAC GGAACGTACAGTCCCTACTCCAAGTTTCCTGTGGGTGCTGCCCTAATGGCTGCGGATGGCAGCATTATCAAGGGG GCCAACATCGAAAATGCCTCTTACGGGGCAACTATTTGTGCCGAGCGGACCGCCCTTGTCAAAGCGATCAGCGAA GGAGTCCGGTCGTTTGTAGCACTTGCAGTCACAAGCAACGTGAAGTCAGCAATATCACCCTGTGGGATATGTCGC CAGTTCATAAGAGAATTTTGTTCTTTGGATATGCCCATTTTACTCGTACCAGGTGATTATCCACAGGCCGGAAAA TCAGAACCAGGGTACTCGGAGGGTGGTGTTCGTGATACCACTTTGGGTGAGCTCTTGCCTATGAGCTTCGGTCCC GAGGATCTCGAGTTACCTAGGAGGAAATAA
Transcript	>AgabiH97|089690 ATGAGTTCCACGGCTTGGACAATGTCTCTTGAAGACCGAAAGAGGCTCATTGAAGCTGCATTCGAAGCGAAAAAC GGAACGTACAGTCCCTACTCCAAGTTTCCTGTGGGTGCTGCCCTAATGGCTGCGGATGGCAGCATTATCAAGGGG GCCAACATCGAAAATGCCTCTTACGGGGCAACTATTTGTGCCGAGCGGACCGCCCTTGTCAAAGCGATCAGCGAA GGAGTCCGGTCGTTTGTAGCACTTGCAGTCACAAGCAACGTGAAGTCAGCAATATCACCCTGTGGGATATGTCGC CAGTTCATAAGAGAATTTTGTTCTTTGGATATGCCCATTTTACTCGTACCAGGTGATTATCCACAGGCCGGAAAA TCAGAACCAGGGTACTCGGAGGGTGGTGTTCGTGATACCACTTTGGGTGAGCTCTTGCCTATGAGCTTCGGTCCC GAGGATCTCGAGTTACCTAGGAGGAAATAA
Gene	>AgabiH97|089690 ATGAGTTCCACGGCTTGGACAATGTCTCTTGAAGACCGAAAGAGGCTCATTGAAGCTGCATTCGAAGGTAACGAC GAGAATTATAGCCAATCGCTTATACTTGATGAGTTGACCTACATCCTTGGTCTCTATAGCGAAAAACGGAACGTA CAGTCCCTACTCCAAGTTTCCTGTGGGTGCTGCCCTAATGGCTGCGGATGGCAGCATTATCAAGGGGGCCAACAT CGAAAATGCCTCTTACGGTGTGTTCTCATCCGATTCGCCCTCAACCATTGCTCATTCTTTTTAGGGGCAACTATT TGTGCCGAGCGGACCGCCCTTGTCAAAGCGATCGTACGAATCCTCGGATTGTGTTACTTTTCCCATTAATCATAC TTTCCTTCTCAGAGCGAAGGAGTCCGGTCGTTTGTAGCACTTGCAGTCACAAGGTTAGTTTGACTCTTGACTGCT CGTCTATAACCCTTCCACTCAATATCATCATTTAGCAACGTGAAGTCAGCAATATCACCCTGTGGGATATGTCGC CAGTTCATAAGAGAATTTTGTTCTTTGGATATGCCCATTTTACTCGTACCAGGTGATTATCCACAGGCCGGAAAA TCAGAACCAGGGTACTCGGAGGGTGGTGTTCGTGATACCACTTTGGGTGAGCTCTTGCCTATGAGCTTCGGTCCC GAGGATCTCGAGTTACCTAGGAGGAAATAA