Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|089660
Gene name
Locationscaffold_6:338716..339156
Strand-
Gene length (bp)440
Transcript length (bp)339
Coding sequence length (bp)339
Protein length (aa) 113

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01185 Hydrophobin Fungal hydrophobin 1.8E-15 31 108

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13300|HYP3_AGABI Hydrophobin-3 OS=Agaricus bisporus GN=abh3 PE=3 SV=1 1 112 2.0E-34
sp|P04158|SC1_SCHCO Fruiting body protein SC1 OS=Schizophyllum commune GN=SC1 PE=2 SV=2 9 108 2.0E-18
sp|O74300|SC6_SCHCO Hydrophobin-6 OS=Schizophyllum commune GN=SC6 PE=3 SV=1 26 106 7.0E-11
sp|P16933|SC3_SCHCO Fruiting body protein SC3 OS=Schizophyllum commune GN=SC3 PE=1 SV=2 1 108 4.0E-10
sp|P49072|HYP1_AGABI Hydrophobin-1 OS=Agaricus bisporus GN=hypA PE=2 SV=1 1 112 1.0E-08
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Swissprot ID Swissprot Description Start End E-value
sp|O13300|HYP3_AGABI Hydrophobin-3 OS=Agaricus bisporus GN=abh3 PE=3 SV=1 1 112 2.0E-34
sp|P04158|SC1_SCHCO Fruiting body protein SC1 OS=Schizophyllum commune GN=SC1 PE=2 SV=2 9 108 2.0E-18
sp|O74300|SC6_SCHCO Hydrophobin-6 OS=Schizophyllum commune GN=SC6 PE=3 SV=1 26 106 7.0E-11
sp|P16933|SC3_SCHCO Fruiting body protein SC3 OS=Schizophyllum commune GN=SC3 PE=1 SV=2 1 108 4.0E-10
sp|P49072|HYP1_AGABI Hydrophobin-1 OS=Agaricus bisporus GN=hypA PE=2 SV=1 1 112 1.0E-08
sp|P49073|HYP2_AGABI Hydrophobin-2 OS=Agaricus bisporus GN=hypC PE=3 SV=2 1 112 6.0E-07
sp|O43122|HYP4_AGABI Hydrophobin-B OS=Agaricus bisporus GN=hypB PE=3 SV=1 26 112 1.0E-06
sp|P16934|SC4_SCHCO Fruiting body protein SC4 OS=Schizophyllum commune GN=SC4 PE=2 SV=1 31 110 8.0E-06
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GO

GO Term Description Terminal node
GO:0005199 structural constituent of cell wall Yes
GO:0009277 fungal-type cell wall Yes
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0005618 cell wall No
GO:0030312 external encapsulating structure No
GO:0005198 structural molecule activity No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

Domain # Start End Length
1 5 24 19
2 49 71 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|089660
MFTRVGAVFIILFPAMLAAASAVPRTTPPQCNGGTIQCCNALYEVTSPIIGVVANPLGILLGPFDGLVGIFCTPV
DIIGGGNSCSQQAACCTGTTYGDGIIITRCSPVILDV*
Coding >AgabiH97|089660
ATGTTCACTCGCGTCGGCGCCGTCTTCATTATTTTGTTCCCCGCCATGCTCGCCGCAGCCAGCGCTGTTCCCCGC
ACTACTCCCCCGCAGTGCAATGGCGGTACCATCCAATGCTGCAATGCTCTTTATGAGGTCACTAGCCCCATCATC
GGAGTCGTTGCTAATCCTCTCGGCATTCTCCTGGGTCCCTTCGACGGCCTTGTTGGTATCTTTTGCACCCCCGTC
GATATCATCGGTGGCGGTAATTCTTGCTCTCAGCAAGCAGCTTGTTGCACTGGCACCACTTATGGCGATGGTATT
ATCATCACTCGCTGCAGCCCCGTCATCCTCGATGTCTAA
Transcript >AgabiH97|089660
ATGTTCACTCGCGTCGGCGCCGTCTTCATTATTTTGTTCCCCGCCATGCTCGCCGCAGCCAGCGCTGTTCCCCGC
ACTACTCCCCCGCAGTGCAATGGCGGTACCATCCAATGCTGCAATGCTCTTTATGAGGTCACTAGCCCCATCATC
GGAGTCGTTGCTAATCCTCTCGGCATTCTCCTGGGTCCCTTCGACGGCCTTGTTGGTATCTTTTGCACCCCCGTC
GATATCATCGGTGGCGGTAATTCTTGCTCTCAGCAAGCAGCTTGTTGCACTGGCACCACTTATGGCGATGGTATT
ATCATCACTCGCTGCAGCCCCGTCATCCTCGATGTCTAA
Gene >AgabiH97|089660
ATGTTCACTCGCGTCGGCGCCGTCTTCATTATTTTGTTCCCCGCCATGCTCGCCGCAGCCAGCGCTGTTCCCCGC
ACTACTCCCCCGCAGTGCAATGGCGGTACCATCCAATGCTGTAAGTTTACATAGCCATCCTCTGAACACATTCTC
AACTACTCTCCAGGCAATGCTCTTTATGAGGTCACTAGCCCCATCATCGGAGTCGTTGCTAATCCTCTCGGCATT
CTCCTGGGTCCCTTCGACGGCCTTGTTGGTATCTTTTGCACCCCCGTCGATATCATCGGTGGCGGTAATTCTTGG
TTCGTACTCTCAAATATCGAGTAAGAAACGTAACTCACGAACGAATTTATAGCTCTCAGCAAGCAGCTTGTTGCA
CTGGCACCACTTATGGCGATGGTATTATCATCACTCGCTGCAGCCCCGTCATCCTCGATGTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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