Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|089560
Gene name
Locationscaffold_6:316032..317950
Strand+
Gene length (bp)1918
Transcript length (bp)1530
Coding sequence length (bp)1530
Protein length (aa) 510

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00494 SQS_PSY Squalene/phytoene synthase 1.4E-35 59 336

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERG9 PE=3 SV=2 1 416 3.0E-149
sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 1 395 4.0E-125
sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 16 394 6.0E-124
sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 1 441 9.0E-115
sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 10 387 2.0E-114
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Swissprot ID Swissprot Description Start End E-value
sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERG9 PE=3 SV=2 1 416 3.0E-149
sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 1 395 4.0E-125
sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 16 394 6.0E-124
sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 1 441 9.0E-115
sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 10 387 2.0E-114
sp|P78589|FDFT_CANAX Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 10 435 2.0E-108
sp|P29704|FDFT_YEAST Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG9 PE=1 SV=2 1 417 5.0E-101
sp|Q752X9|FDFT_ASHGO Squalene synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG9 PE=3 SV=1 10 393 2.0E-94
sp|P53798|FDFT_MOUSE Squalene synthase OS=Mus musculus GN=Fdft1 PE=1 SV=2 11 395 1.0E-93
sp|Q02769|FDFT_RAT Squalene synthase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1 11 374 5.0E-93
sp|Q32KR6|FDFT_BOVIN Squalene synthase OS=Bos taurus GN=FDFT1 PE=2 SV=1 11 373 1.0E-91
sp|Q9HGZ6|FDFT_CANGA Squalene synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG9 PE=3 SV=2 1 399 2.0E-91
sp|Q5R6U3|FDFT_PONAB Squalene synthase OS=Pongo abelii GN=FDFT1 PE=2 SV=1 11 374 7.0E-91
sp|P37268|FDFT_HUMAN Squalene synthase OS=Homo sapiens GN=FDFT1 PE=1 SV=1 11 374 7.0E-91
sp|Q54DR1|FDFT_DICDI Squalene synthase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1 11 389 3.0E-83
sp|Q9SDW9|BSS_BOTBR Squalene synthase OS=Botryococcus braunii GN=BSS PE=1 SV=1 1 390 1.0E-80
sp|G0Y287|BOSS_BOTBR Botryococcus squalene synthase OS=Botryococcus braunii GN=SSL-2 PE=1 SV=1 7 367 3.0E-80
sp|P53799|FDFT_ARATH Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=1 SV=1 52 405 1.0E-73
sp|P53800|FDFT_NICBE Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1 52 374 2.0E-72
sp|G0Y288|BOCS_BOTBR Botryococcene synthase OS=Botryococcus braunii GN=SSL-3 PE=2 SV=1 10 375 1.0E-54
sp|G0Y286|PSDS_BOTBR Presqualene diphosphate synthase OS=Botryococcus braunii GN=SSL-1 PE=1 SV=1 10 349 9.0E-52
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GO

GO Term Description Terminal node
GO:0009058 biosynthetic process Yes
GO:0008152 metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

Domain # Start End Length
1 474 496 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|089560
MGATKWLALLLFHPLEFRTLLQFYLYHEQKRDIKALKEHPTSGWDRQSMRRCWDFLDMTSRSFSAVIKELDGDLA
RTICLFYLVLRGLDTIEDDMTIPDKVKQPILRKFHELTVEHGWKFDGCGPNEKDRQLLVEYDTIVEEVNRLDPSF
KEVIIDICHKMENGMADFAHQAATTGKIYIATVAEYDLYCHYVAGLVGEGLSRIFTASGKEAEWLGQQLELSNSM
GLLLQKTNIIRDYREDTDDQRYFWPKEIWGKYGFNEMKEMYAPGASEKAQWVQSGMILDALRHATDALEYLRFLK
NQTIFNFCAIPASMAISTLELCFMNPDMFERNIKIRKATAAQLIMRSTNPRDVGQIFCEYARKIHAKAVPTDPNF
MQISVACGKIEQWCEQNYPSFIQPPNAPGNPPTLDGYDARSRIAEADNKFTSELATRKRMIEIANGDRQIAMQRI
ERFTGGGSNTQASNNGAVSSTTMMFYIAAGIVLIVAVGFGVTFAVIKAAGISLKGSGST*
Coding >AgabiH97|089560
ATGGGTGCTACGAAATGGCTCGCTCTTCTCCTCTTCCACCCTCTCGAGTTCAGGACTCTGCTCCAGTTCTACCTA
TACCATGAGCAGAAGCGTGATATCAAGGCCTTGAAGGAGCACCCGACGTCGGGCTGGGACCGGCAGTCGATGCGG
AGATGTTGGGACTTCCTGGACATGACAAGTAGGAGTTTTTCGGCGGTTATTAAGGAACTAGACGGCGACCTGGCT
CGAACAATATGTCTGTTTTACCTCGTTCTTCGAGGTCTGGACACGATCGAAGATGATATGACCATTCCAGACAAA
GTCAAGCAACCCATTTTACGAAAGTTTCACGAATTAACCGTCGAACATGGATGGAAATTCGACGGTTGCGGTCCT
AATGAGAAGGACCGCCAACTCCTTGTCGAATATGACACAATTGTTGAAGAAGTCAACCGCCTTGACCCTTCCTTC
AAAGAGGTCATTATTGACATTTGCCATAAAATGGAAAATGGCATGGCCGACTTTGCCCATCAAGCCGCAACAACA
GGGAAGATTTACATTGCGACCGTCGCTGAATACGACCTATACTGTCACTACGTCGCAGGCCTCGTCGGTGAGGGG
TTATCCCGAATTTTCACCGCATCAGGGAAAGAAGCCGAGTGGCTTGGTCAGCAGCTCGAGTTATCGAACTCCATG
GGACTTCTTCTACAAAAGACCAACATCATCCGTGACTACCGAGAGGACACTGACGATCAACGATATTTCTGGCCC
AAAGAAATTTGGGGCAAGTATGGTTTCAACGAGATGAAAGAAATGTACGCACCAGGGGCATCAGAAAAAGCCCAA
TGGGTGCAGAGCGGAATGATCTTGGATGCCCTCAGGCACGCGACTGATGCTTTGGAATATCTCCGATTCTTGAAG
AACCAGACCATTTTCAACTTTTGTGCCATTCCTGCCTCCATGGCTATCTCCACCCTAGAGCTGTGCTTTATGAAC
CCTGATATGTTCGAGCGGAATATCAAGATTCGCAAGGCTACTGCCGCTCAGCTTATTATGCGATCTACAAATCCT
CGCGATGTTGGTCAGATTTTCTGCGAATACGCTCGTAAAATTCATGCAAAAGCCGTCCCGACCGATCCCAACTTC
ATGCAGATTTCAGTCGCCTGTGGCAAGATTGAACAGTGGTGTGAACAAAACTACCCTTCATTCATCCAACCACCC
AACGCACCAGGTAACCCTCCCACGCTGGACGGATACGATGCTCGTTCACGCATCGCCGAGGCCGACAACAAATTT
ACATCAGAACTCGCTACCCGTAAACGTATGATCGAAATAGCCAACGGAGATCGTCAAATCGCAATGCAACGAATT
GAGAGATTCACAGGTGGTGGCAGTAATACCCAAGCGTCGAACAATGGTGCAGTGTCGTCAACGACTATGATGTTC
TATATCGCTGCTGGGATAGTGTTGATCGTCGCTGTCGGTTTCGGTGTAACGTTCGCTGTAATCAAGGCTGCTGGT
ATTTCTTTGAAAGGTTCGGGGTCAACATAA
Transcript >AgabiH97|089560
ATGGGTGCTACGAAATGGCTCGCTCTTCTCCTCTTCCACCCTCTCGAGTTCAGGACTCTGCTCCAGTTCTACCTA
TACCATGAGCAGAAGCGTGATATCAAGGCCTTGAAGGAGCACCCGACGTCGGGCTGGGACCGGCAGTCGATGCGG
AGATGTTGGGACTTCCTGGACATGACAAGTAGGAGTTTTTCGGCGGTTATTAAGGAACTAGACGGCGACCTGGCT
CGAACAATATGTCTGTTTTACCTCGTTCTTCGAGGTCTGGACACGATCGAAGATGATATGACCATTCCAGACAAA
GTCAAGCAACCCATTTTACGAAAGTTTCACGAATTAACCGTCGAACATGGATGGAAATTCGACGGTTGCGGTCCT
AATGAGAAGGACCGCCAACTCCTTGTCGAATATGACACAATTGTTGAAGAAGTCAACCGCCTTGACCCTTCCTTC
AAAGAGGTCATTATTGACATTTGCCATAAAATGGAAAATGGCATGGCCGACTTTGCCCATCAAGCCGCAACAACA
GGGAAGATTTACATTGCGACCGTCGCTGAATACGACCTATACTGTCACTACGTCGCAGGCCTCGTCGGTGAGGGG
TTATCCCGAATTTTCACCGCATCAGGGAAAGAAGCCGAGTGGCTTGGTCAGCAGCTCGAGTTATCGAACTCCATG
GGACTTCTTCTACAAAAGACCAACATCATCCGTGACTACCGAGAGGACACTGACGATCAACGATATTTCTGGCCC
AAAGAAATTTGGGGCAAGTATGGTTTCAACGAGATGAAAGAAATGTACGCACCAGGGGCATCAGAAAAAGCCCAA
TGGGTGCAGAGCGGAATGATCTTGGATGCCCTCAGGCACGCGACTGATGCTTTGGAATATCTCCGATTCTTGAAG
AACCAGACCATTTTCAACTTTTGTGCCATTCCTGCCTCCATGGCTATCTCCACCCTAGAGCTGTGCTTTATGAAC
CCTGATATGTTCGAGCGGAATATCAAGATTCGCAAGGCTACTGCCGCTCAGCTTATTATGCGATCTACAAATCCT
CGCGATGTTGGTCAGATTTTCTGCGAATACGCTCGTAAAATTCATGCAAAAGCCGTCCCGACCGATCCCAACTTC
ATGCAGATTTCAGTCGCCTGTGGCAAGATTGAACAGTGGTGTGAACAAAACTACCCTTCATTCATCCAACCACCC
AACGCACCAGGTAACCCTCCCACGCTGGACGGATACGATGCTCGTTCACGCATCGCCGAGGCCGACAACAAATTT
ACATCAGAACTCGCTACCCGTAAACGTATGATCGAAATAGCCAACGGAGATCGTCAAATCGCAATGCAACGAATT
GAGAGATTCACAGGTGGTGGCAGTAATACCCAAGCGTCGAACAATGGTGCAGTGTCGTCAACGACTATGATGTTC
TATATCGCTGCTGGGATAGTGTTGATCGTCGCTGTCGGTTTCGGTGTAACGTTCGCTGTAATCAAGGCTGCTGGT
ATTTCTTTGAAAGGTTCGGGGTCAACATAA
Gene >AgabiH97|089560
ATGGGTGCTACGAAATGGCTCGCTCTTCTCCTCTTCCACCCTCTCGAGTTCAGGACTCTGCTCCAGTTCTACCTA
TACCATGAGCAGAAGCGTGATATCAAGGCCTTGAAGGAGCACCCGACGTCGGGCTGGGACCGGCAGTCGATGCGG
AGATGTTGGGACTTCCTGGACATGACAAGTAGGAGTTTTTCGGCGGTTATTAAGGAACTAGACGGCGACCTGGCT
CGAACAGTAAGTATCCTTGTCCAGTCTTCCTCGGAGGCTTCATATTTCATGCGCCCGTCGATTTGCTCGTACGAG
GAGCCGGGTAGACTTTGTGGCCACGTCGCCCTATAGGAGGGTATTTGTGCAAGAATCATCCATTTGTTGACGTGG
CTATTATTTTAATCGCCGGAATAGAAGCCCCCTATCACGCCGTCTGTGTATGGACCACGCTGACCATGTGTCTAG
ATATGTCTGTTTTACCTCGTTCTTCGAGGTCTGGACACGATCGAAGATGATATGACCATTCCAGACAAAGTCAAG
CAACCCATTTTACGAAAGTTTCACGAATTAACCGTCGAACATGGATGGAAATTCGACGGTTGCGGTCCTAATGAG
AAGGACCGCCAACTCCTTGTCGAATATGACACAATTGTTGAAGAAGTCAACCGCCTTGACCCTTCGTACGTTTTT
GATTCATCGTTTCCCCAAACATTCTTCTCAAATGCCATGCTTTCTAGCTTCAAAGAGGTCATTATTGACATTTGC
CATAAAATGGAAAATGGCATGGCCGACTTTGCCCATCAAGCCGCAACAACAGGGAAGATTTACATTGCGACCGTC
GCTGAATACGACCTATACTGTCACTACGTCGCAGGCCTCGTCGGTGAGGGGTTATCCCGAATTTTCACCGCATCA
GGGAAAGAAGCCGAGTGGCTTGGTCAGCAGCTCGAGTTATCGAACTCCATGGGACTTCTTCTACAAAAGACCAAC
ATCATCCGTGACTACCGAGAGGACACTGACGATCAACGATATTTCTGGCCCAAAGAAATTTGGGGCAAGTATGGT
TTCAACGAGATGAAAGAAATGTACGCACCAGGGGCATCAGAAAAAGCCCAATGGGTGCAGAGCGGAATGATCTTG
GATGCCCTCAGGCACGCGACTGATGCTTTGGAATATCTCCGATTCTTGAAGAACCAGACCATTTTCAACTTTTGT
GCCATTCCTGCCTCCATGGCTATCTCCACCCTAGAGCTGTGCTTTATGAACCCTGATATGTTCGAGCGGAATATC
AAGATTCGCAAGGCTACTGCCGCTCAGGTAGGTCGCTTTGATTTCACTCCAAGCTTCTACTCAAATTGCATACCT
CATTCCAGCTTATTATGCGATCTACAAATCCTCGCGATGTTGGTCAGATTTTCTGCGAATACGCTCGTAAAATTC
ATGCAAAAGCCGTCCCGACCGATCCCAACTTCATGCAGATTTCAGTCGCCTGTGGCAAGGTAAACATACTCTTAT
TCTATGCAGGTTCACGAAATTAATTTTCATTTTCCTGCAGATTGAACAGTGGTGTGAACAAAACTACCCTTCATT
CATCCAACCACCCAACGCACCAGGTAACCCTCCCACGCTGGACGGATACGATGCTCGTTCACGCATCGCCGAGGC
CGACAACAAATTTACATCAGAACTCGCTACCCGTAAACGTATGATCGAAATAGCCAACGGAGATCGTCAAATCGC
AATGCAACGAATTGAGAGATTCACAGGTGGTGGCAGTAATACCCAAGCGTCGAACAATGGTGCAGTGTCGTCAAC
GACTATGATGTTCTATATCGCTGCTGGGATAGTGTTGATCGTCGCTGTCGGTTTCGGTGTAACGTTCGCTGTAAT
CAAGGCTGCTGGTATTTCTTTGAAAGGTTCGGGGTCAACATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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