Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|088000
Gene name
Locationscaffold_5:2455290..2456625
Strand+
Gene length (bp)1335
Transcript length (bp)747
Coding sequence length (bp)747
Protein length (aa) 249

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01522 Polysacc_deac_1 Polysaccharide deacetylase 1.6E-23 34 152

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 26 241 3.0E-26
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 17 231 3.0E-24
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 37 234 6.0E-18
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 15 227 5.0E-17
sp|O34928|PDAA_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 34 226 8.0E-15
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Swissprot ID Swissprot Description Start End E-value
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 26 241 3.0E-26
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 17 231 3.0E-24
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 37 234 6.0E-18
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 15 227 5.0E-17
sp|O34928|PDAA_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 34 226 8.0E-15
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 39 215 7.0E-14
sp|P83513|XY11A_PSEXY Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 39 226 1.0E-11
sp|P50352|NODB_BRAEL Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 37 167 1.0E-11
sp|Q52845|NODB_RHILO Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 37 226 1.0E-10
sp|Q59674|XY11A_CELJA Bifunctional xylanase/xylan deacetylase OS=Cellvibrio japonicus GN=xyn11A PE=1 SV=1 39 167 3.0E-10
sp|P04675|NODB_BRASP Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 37 167 4.0E-10
sp|P0CP76|CDA_CRYNJ Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 40 233 7.0E-10
sp|P82476|CDA_CRYNH Chitin deacetylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_01239 PE=1 SV=3 40 233 8.0E-10
sp|P0CP77|CDA_CRYNB Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 40 233 8.0E-10
sp|O34798|PDAC_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 33 227 2.0E-09
sp|P50850|YLXY_BACSU Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 50 227 3.0E-09
sp|Q06702|CDA1_YEAST Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 30 229 1.0E-08
sp|P04339|NODB_RHILV Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 31 220 1.0E-08
sp|P50355|NODB_RHISN Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 26 222 5.0E-08
sp|P02963|NODB_RHIME Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 22 167 2.0E-07
sp|P50354|NODB_RHIGA Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 39 197 5.0E-07
sp|O07596|YHEN_BACSU Putative polysaccharide deacetylase YheN OS=Bacillus subtilis (strain 168) GN=yheN PE=3 SV=1 38 234 1.0E-06
sp|Q04729|YFUM2_GEOSE Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 39 228 1.0E-06
sp|P24150|NODB_RHILP Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. phaseoli GN=nodB PE=3 SV=1 41 167 4.0E-06
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GO

GO Term Description Terminal node
GO:0005975 carbohydrate metabolic process Yes
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Yes
GO:0008152 metabolic process No
GO:0003674 molecular_function No
GO:0016787 hydrolase activity No
GO:0003824 catalytic activity No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|088000
MLFTKISVVLATLAATVFAAPHKRQLAQVITTCTEPNTVALTFDDGPYYYIYDISRTLAAANATGTFFFNGNNYG
CIYNADNAKRIKYAHDHGHQVASHTWGHKDLATLTWDEIHDEMWRVEEALLKITGAYPAFTRPPFGSYNDLVRQA
AAVRGQALANWDFETGDAVGVTVPEQYAKIDELIARHPNTILSLQHETIASTMTEVLPYFLQQLQGAGYRLVSVA
ECTGLPAYQYVTEPQQADETWQC*
Coding >AgabiH97|088000
ATGCTGTTCACTAAAATTTCTGTGGTCCTTGCTACTCTCGCTGCTACTGTTTTTGCGGCGCCGCATAAAAGGCAA
CTCGCTCAAGTCATCACTACTTGCACGGAACCCAACACTGTTGCCTTGACTTTCGATGACGGGCCATACTACTAC
ATCTACGATATCAGCCGGACCCTAGCTGCAGCCAATGCTACGGGAACTTTCTTCTTCAATGGTAACAACTATGGA
TGCATTTACAATGCCGACAACGCGAAACGGATCAAGTATGCTCATGACCACGGACATCAAGTTGCGTCCCATACT
TGGGGCCACAAGGACTTGGCTACCCTCACTTGGGATGAGATTCACGATGAAATGTGGCGAGTTGAAGAGGCATTG
TTAAAAATTACCGGAGCTTATCCCGCTTTCACGCGCCCTCCTTTTGGATCGTACAATGATCTCGTTCGCCAAGCT
GCTGCTGTCCGCGGTCAAGCTCTTGCCAATTGGGATTTCGAAACTGGAGACGCCGTTGGTGTAACAGTACCCGAA
CAGTATGCCAAAATCGACGAGCTTATTGCTCGTCACCCCAACACCATCTTGTCTCTCCAACATGAAACAATTGCT
AGCACCATGACCGAAGTTCTTCCTTATTTCCTTCAGCAACTTCAAGGAGCAGGATACAGGCTTGTCTCAGTCGCT
GAATGTACTGGATTGCCAGCATATCAATATGTTACTGAACCCCAGCAAGCGGATGAAACCTGGCAGTGCTAA
Transcript >AgabiH97|088000
ATGCTGTTCACTAAAATTTCTGTGGTCCTTGCTACTCTCGCTGCTACTGTTTTTGCGGCGCCGCATAAAAGGCAA
CTCGCTCAAGTCATCACTACTTGCACGGAACCCAACACTGTTGCCTTGACTTTCGATGACGGGCCATACTACTAC
ATCTACGATATCAGCCGGACCCTAGCTGCAGCCAATGCTACGGGAACTTTCTTCTTCAATGGTAACAACTATGGA
TGCATTTACAATGCCGACAACGCGAAACGGATCAAGTATGCTCATGACCACGGACATCAAGTTGCGTCCCATACT
TGGGGCCACAAGGACTTGGCTACCCTCACTTGGGATGAGATTCACGATGAAATGTGGCGAGTTGAAGAGGCATTG
TTAAAAATTACCGGAGCTTATCCCGCTTTCACGCGCCCTCCTTTTGGATCGTACAATGATCTCGTTCGCCAAGCT
GCTGCTGTCCGCGGTCAAGCTCTTGCCAATTGGGATTTCGAAACTGGAGACGCCGTTGGTGTAACAGTACCCGAA
CAGTATGCCAAAATCGACGAGCTTATTGCTCGTCACCCCAACACCATCTTGTCTCTCCAACATGAAACAATTGCT
AGCACCATGACCGAAGTTCTTCCTTATTTCCTTCAGCAACTTCAAGGAGCAGGATACAGGCTTGTCTCAGTCGCT
GAATGTACTGGATTGCCAGCATATCAATATGTTACTGAACCCCAGCAAGCGGATGAAACCTGGCAGTGCTAA
Gene >AgabiH97|088000
ATGCTGTTCACTAAAATTTCTGTGGTCCTTGCTACTCTCGCTGCTACTGTTTTTGCGGCGCCGCATAAAAGGCAA
CTCGCTCAAGTCATCACTACTTGCACGGAACCCAACACTGTTGCCTTGACTTTCGTAAGTCATTTTGAGCGACCC
ATGTAGAACGGTAATAACACGACGCGACAGGATGACGGGCCATACTACTACATGTAAGATTCAGCTTCTTTTTGT
AATATGACGGCTGTTTAAACTATCTATCTTCTAGCTACGATATCAGCCGGACCCTAGCTGCAGCCAATGCTACGG
GAACTTTCTTCTTCAGTAAGCCTTTCCTAATATCACAACCGAGTTTTTGTCTGAGACGATTATCCTACCTTGCAG
ATGGTAACAACTGTACGTCCATTTTCCACTGCTACCGTCGTAGCTTCAATCGGCTCATGGATATGTAGATGGATG
CATTTACAATGCCGACAACGCGAAACGGATCAAGTATGCTCATGACCACGGACATCAAGTTGCGTCCCATACTTG
GGGCCACAAGGACTTGGCTACCCTCACTTGGGATGAGATTCACGATGAAATGTGGCGAGTTGAAGGTGTGTATAT
CAACGTTCAATCTCTTTTTCGCCCGACAGTCGGAGAGACCCTTTATTGATGATTGAATAGAGGCATTGTTAAAAA
TTACCGGAGCTTATCCCGCTTTCACGCGCCCTCGTAAGTGTTTCAAAATCTATTCCAGTGACCTACGTGGACCGC
TGACTATCTTTGTTATCAACGCCAGCTTTTGGATCGTACAATGATCTCGTTCGCCAAGCTGCTGCTGTCCGCGGT
CAAGCTCTTGCCAATTGGGATTTCGAGTGAGTTTCGTGCTTTTTTTGTAACGAAATCATCCTCACGTGTACTTGA
TAAATTTTACAGAACTGGAGACGCCGTTGGTGTAACAGTACCCGAACAGTATGCCAAAATCGACGAGCTTATTGC
TCGTCACCCCAACACCATCTTGTCTCTCCAACATGAAACAATTGGTTCGTAACATCTTACGATCATTCTATCCAT
GAATCGTCGCTCATTACATCTATCATTTCAGCTAGCACCATGTAAGCTGTCAAACGCACCCGACATTGACCGTTA
TTAATCTTCTTTTGCAGGACCGAAGTTCTTCCTTATTTCCTTCAGCAACTTCAAGGAGCAGGATACAGGCTTGTC
TCAGTCGCTGAATGTACTGGATTGCCAGCATATCAATATGTTACTGAACCCCAGCAAGCGGATGTAAGTCTCATT
TATACCATCGCTCCTTGTCTCCGTCTTATCAAATGCTCTCAGGAAACCTGGCAGTGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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