© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|087950 |
| Gene name | |
| Location | scaffold_5:2444973..2447224 |
| Strand | + |
| Gene length (bp) | 2251 |
| Transcript length (bp) | 1464 |
| Coding sequence length (bp) | 1464 |
| Protein length (aa) | 488 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05978 | UNC-93 | Ion channel regulatory protein UNC-93 | 2.9E-06 | 91 | 278 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8LG53|UN932_ARATH | UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2 | 52 | 441 | 2.0E-89 |
| sp|Q56WD3|UN931_ARATH | UNC93-like protein 1 OS=Arabidopsis thaliana GN=At1g18000 PE=2 SV=2 | 52 | 441 | 2.0E-89 |
| sp|Q9URX1|YLX5_SCHPO | UNC93-like protein C922.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC922.05c PE=3 SV=1 | 55 | 453 | 2.0E-86 |
| sp|O14237|YEL4_SCHPO | Uncharacterized membrane protein C6F6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.04c PE=4 SV=1 | 52 | 426 | 1.0E-39 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 99 | 121 | 22 |
| 2 | 128 | 150 | 22 |
| 3 | 165 | 187 | 22 |
| 4 | 199 | 221 | 22 |
| 5 | 257 | 276 | 19 |
| 6 | 297 | 315 | 18 |
| 7 | 325 | 347 | 22 |
| 8 | 368 | 385 | 17 |
| 9 | 435 | 457 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|087950 MVSELPSVCLSPYFNIPDLTAREYVQQWAEPCLKQDLGCSILSHVIADEDDCRIGMYNAISGLGGSGQLDSTVAA NATVALLAATAASALFFVPPIFDASIFACLLIGGWTYPLYSGSLLCYNHTNNAAFVIASGAILGIGASFLWVAQG AIMVSYPLPDQKGRAIALFWVVFNLGGGIGSFISFALNFNSTAGTVTDGTYGAFIAIMAFGWLFSVSIAPPHKVV RKDGTMAGSRPEKSANFTAAIHREVNNFVTSLGNWRILLLIPAFFCANFFYSYQQNSVNGDIFTLRTRSLNGSMY WIAQMFGGLLIGFLLDLKYLTRPQRALLGWVFVLVTGFAIWGGGLAFQRWANGIGRKQWLDFSDSRTYIGPFWLY FFYGAFDAFWQSYCYWLMASLAESPAAAAKFVGLYKTFQATGGAVAWRINALKYPPLTQFAINWGLFGGALLIAL PTVLSITASPLLRAKQDESEQDESGKSPVIESSKDDA* |
| Coding | >AgabiH97|087950 ATGGTTTCGGAACTACCCTCCGTTTGTCTGTCACCCTACTTCAACATCCCCGACTTGACGGCTAGAGAATACGTC CAACAATGGGCCGAACCATGTCTGAAGCAAGATTTGGGTTGTTCGATCCTTTCTCATGTTATCGCTGACGAAGAC GACTGTCGAATAGGAATGTACAACGCTATTAGTGGTTTGGGAGGGTCTGGTCAGCTCGATAGCACAGTCGCGGCC AATGCAACCGTCGCTCTGTTAGCAGCAACGGCGGCATCTGCGCTCTTTTTTGTTCCTCCGATCTTTGATGCAAGT ATCTTCGCGTGTCTACTGATAGGTGGCTGGACTTACCCATTGTACTCCGGATCACTCCTATGCTACAACCACACG AACAATGCGGCTTTTGTCATTGCATCTGGAGCAATCCTTGGTATCGGTGCATCTTTCCTTTGGGTAGCGCAAGGA GCTATCATGGTTTCGTATCCTCTACCAGATCAGAAAGGACGAGCCATCGCTCTGTTCTGGGTTGTATTTAACCTT GGAGGAGGTATTGGGTCCTTCATTTCGTTCGCCCTCAATTTCAACTCCACGGCTGGCACAGTTACTGATGGAACA TATGGCGCTTTCATAGCTATCATGGCCTTTGGCTGGCTGTTTTCCGTCTCGATTGCCCCGCCACACAAGGTTGTC AGAAAGGATGGTACGATGGCTGGATCACGCCCTGAGAAATCGGCGAATTTTACCGCGGCCATCCATCGCGAAGTC AACAACTTTGTAACGTCACTGGGAAATTGGAGAATTCTTCTACTTATTCCGGCATTCTTCTGTGCCAACTTCTTC TACTCTTACCAACAGAATAGCGTCAATGGTGATATTTTCACTTTGAGAACACGATCTTTAAATGGATCTATGTAT TGGATTGCCCAAATGTTCGGTGGCCTACTTATTGGGTTTTTACTCGATCTTAAATATCTAACTCGACCTCAACGC GCTCTGCTCGGATGGGTTTTCGTACTTGTAACTGGGTTTGCTATATGGGGAGGTGGGCTTGCATTCCAAAGATGG GCTAACGGGATTGGAAGGAAGCAGTGGTTAGACTTCTCCGATTCAAGGACATACATCGGTCCTTTCTGGTTATAC TTCTTTTATGGTGCTTTTGATGCTTTCTGGCAATCTTACTGTTATTGGTTGATGGCTTCGTTAGCCGAGTCCCCC GCCGCTGCGGCCAAGTTCGTTGGTTTATACAAGACGTTCCAAGCAACAGGTGGTGCAGTTGCGTGGAGAATTAAC GCATTGAAGTATCCTCCTTTGACCCAATTTGCGATCAATTGGGGACTCTTCGGGGGCGCATTGCTAATTGCGTTA CCAACTGTTCTTTCTATCACGGCTTCTCCATTGCTCCGCGCGAAACAGGATGAAAGTGAGCAAGACGAGTCCGGA AAATCGCCGGTCATCGAATCTTCGAAGGACGACGCCTAA |
| Transcript | >AgabiH97|087950 ATGGTTTCGGAACTACCCTCCGTTTGTCTGTCACCCTACTTCAACATCCCCGACTTGACGGCTAGAGAATACGTC CAACAATGGGCCGAACCATGTCTGAAGCAAGATTTGGGTTGTTCGATCCTTTCTCATGTTATCGCTGACGAAGAC GACTGTCGAATAGGAATGTACAACGCTATTAGTGGTTTGGGAGGGTCTGGTCAGCTCGATAGCACAGTCGCGGCC AATGCAACCGTCGCTCTGTTAGCAGCAACGGCGGCATCTGCGCTCTTTTTTGTTCCTCCGATCTTTGATGCAAGT ATCTTCGCGTGTCTACTGATAGGTGGCTGGACTTACCCATTGTACTCCGGATCACTCCTATGCTACAACCACACG AACAATGCGGCTTTTGTCATTGCATCTGGAGCAATCCTTGGTATCGGTGCATCTTTCCTTTGGGTAGCGCAAGGA GCTATCATGGTTTCGTATCCTCTACCAGATCAGAAAGGACGAGCCATCGCTCTGTTCTGGGTTGTATTTAACCTT GGAGGAGGTATTGGGTCCTTCATTTCGTTCGCCCTCAATTTCAACTCCACGGCTGGCACAGTTACTGATGGAACA TATGGCGCTTTCATAGCTATCATGGCCTTTGGCTGGCTGTTTTCCGTCTCGATTGCCCCGCCACACAAGGTTGTC AGAAAGGATGGTACGATGGCTGGATCACGCCCTGAGAAATCGGCGAATTTTACCGCGGCCATCCATCGCGAAGTC AACAACTTTGTAACGTCACTGGGAAATTGGAGAATTCTTCTACTTATTCCGGCATTCTTCTGTGCCAACTTCTTC TACTCTTACCAACAGAATAGCGTCAATGGTGATATTTTCACTTTGAGAACACGATCTTTAAATGGATCTATGTAT TGGATTGCCCAAATGTTCGGTGGCCTACTTATTGGGTTTTTACTCGATCTTAAATATCTAACTCGACCTCAACGC GCTCTGCTCGGATGGGTTTTCGTACTTGTAACTGGGTTTGCTATATGGGGAGGTGGGCTTGCATTCCAAAGATGG GCTAACGGGATTGGAAGGAAGCAGTGGTTAGACTTCTCCGATTCAAGGACATACATCGGTCCTTTCTGGTTATAC TTCTTTTATGGTGCTTTTGATGCTTTCTGGCAATCTTACTGTTATTGGTTGATGGCTTCGTTAGCCGAGTCCCCC GCCGCTGCGGCCAAGTTCGTTGGTTTATACAAGACGTTCCAAGCAACAGGTGGTGCAGTTGCGTGGAGAATTAAC GCATTGAAGTATCCTCCTTTGACCCAATTTGCGATCAATTGGGGACTCTTCGGGGGCGCATTGCTAATTGCGTTA CCAACTGTTCTTTCTATCACGGCTTCTCCATTGCTCCGCGCGAAACAGGATGAAAGTGAGCAAGACGAGTCCGGA AAATCGCCGGTCATCGAATCTTCGAAGGACGACGCCTAA |
| Gene | >AgabiH97|087950 ATGGTTTCGGAACTACCCTCCGTTTGTCTGTCACCCTACTTCAACATCCCCGACTTGACGGCTAGAGAATACGTC CAACAATGGGCCGAACCATGTCTGAAGTATATCGGTCGCCAATGACTCAAGTACTGCTTATCTCTATCGTGTGCT TTTGTTGTCCAGGCAAGATTTGGGTTGTTCGATCCTTTCTCATGTTATCGCTGACGAAGACGACTGTCGAATAGG AATGTACAACGCTATTAGTGGTTTGGGAGGGTCTGGTCAGCTCGATAGCACAGTCGCGGCCAATGCAACCGTCGC TCTGTTAGCAGCAACGGCGGCATCTGCGCTCTTTTTTGTTCCTCCGATCTTTGATGCAAGTATCTTCGGTACCGA AATACCGATCACTAATCCGCAAATTTAATAGATGCTCGGTCCGAAAGCGTGTCTACTGATAGGTTGGTTTAACTT TCACGATGAAACTTCCCGGCGGTGACAGGCCCTGCTTTACATAGGTGGCTGGACTTACCCATTGTACTCCGGATC ACTCCTATGCTACAACCACACGAACAATGCGGCTTTTGTCATTGCATCTGGAGCAATCCTTGGTATCGGTGCATC TTTCCTTTGGGTAGCGCAAGGAGCTGTTGAGTTTTTCTCGTCTTGATTCATTCTTGATGTCTGATATACTTCCAT GCAGATCATGGTTTCGTATCCTCTACCAGATCAGAAAGGACGAGCCATCGCTCTGTTCTGGGTAAGTGTTACCCT CTGTTTGTTCATTGAAAAAGACGACTGATTACAGCGAAGGTTGTATTTAACCTTGGAGGAGGTATTGGGTCCTTC ATTTCGTTCGCCCTCAATTTCAACTCCACGGCTGGCACAGTTACTGATGGAACATGTGAGTCTTGATATGATATG TTTCCTGAACGTTTGGCATTGAATCCATTATCATGTCAGATGGCGCTTTCATAGCTATCATGGGTGAGATGAAGA TAAACCTTGCGATTCTCGTATCTGATACTAATTCTGACATTAGCCTTTGGCTGGCTGTTTTCCGTCTCGATTGCC CCGCCACACAAGGTTGTCAGAAAGGATGGTACGATGGCTGGATCACGCCCTGAGAAATCGGCGAATTTTACCGCG GCCATCCATCGCGAAGTCAACAACTTTGTAACGTCACTGGGAAATTGGAGAATTCTTCTACTTATTCCGGCATTC TTCTGTGCCAACTTCTTCTACTCTTACCAACAGAATAGCGTCAATGGTATGTACCACTTGCTTCGTCTGTGTTAC ATTGATCATCCATTTACCAACACTCTCAGGTGATATTTTCACTTTGAGAACACGATCTTTAAATGGATCTATGTA TTGGATTGCCCAAATGGTGAGTGCGAAGCTAGCATGTGTATTCAAATCTTCAATTTGGGTGTGATCACATCAGTT CGGTGGCCTACTTATTGGGTTTTTACTCGATCTTAAATATCTAACTCGACCTCAACGCGCTCTGCTCGGATGGGT TTTCGTACTTGTAACTGGGTTTGCTATATGGGGAGGTGAGTTGAATTGTTCGAGAACCGTTTATTATTGAAACGA GATATCTTATCTAGGTGGGCTTGCATTCCAAAGATGGGCTAACGGGATTGGAAGGAAGCAGTGGTTAGACTTCTC CGATTCAAGGACATACATCGGTCCTTTCTGGTTGTAAGCGTTATTCTCAAAAACGGAAGAATTACATGCTGACGC TGAGGAACTTTCAGATACTTCTTTTATGGTGCTTTTGATGCTTTCTGGCAAGTACGTGGGGCGGTTTCTTGAGTA TTGTGCTTACTGGTGCAGTCATTGATATGAGTAATAGTCTTACTGTTATTGGTTGATGGCTTCGTTAGCCGAGTC CCCCGCCGCTGCGGCCAAGTTCGTTGGTTGTGCGTATTCAAATACTTCATCAAGCTTCTCAAAGTGGGCTGACGA TTTGCGCAGTATACAAGACGTTCCAAGCAACAGGTGGTGCAGTTGCGTGGAGAATTAACGCATTGAAGTGTGAGT GTGTGAAGCTTCAAATAGGCCACATTTACTAAAGCTTTGTCAAAAAGATCCTCCTTTGACCCAATTTGCGATCAA TTGGGGACTCTTCGGGGGCGCATTGCTAATTGCGTTACCAACTGTTCTTTCTATCACGGCTTCTCCATTGCTCCG CGCGAAACAGGATGAAAGTGAGCAAGACGAGTCCGGAAAATCGCCGGTCATCGAATCTTCGAAGGACGACGCCTA A |