© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|086860 |
| Gene name | |
| Location | scaffold_5:2137473..2139097 |
| Strand | - |
| Gene length (bp) | 1624 |
| Transcript length (bp) | 1572 |
| Coding sequence length (bp) | 1572 |
| Protein length (aa) | 524 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02992 | Transposase_21 | Transposase family tnp2 | 2.9E-21 | 418 | 522 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 5.28 | 2.28 | 8.27 |
| Initials | Initials knots | 3.34 | 1.42 | 5.26 |
| Pileal_Stipeal_center | Stage I stipe center | 4.25 | 1.92 | 6.58 |
| Pileal_Stipeal_shell | Stage I stipe shell | 4.89 | 2.29 | 7.48 |
| DIF_stipe_center | Stage II stipe center | 6.05 | 2.92 | 9.17 |
| DIF_stipe_shell | Stage II stipe shell | 7.22 | 3.56 | 10.88 |
| DIF_stipe_skin | Stage II stipe skin | 5.64 | 2.68 | 8.59 |
| DIF_cap_skin | Stage II cap skin | 5.15 | 2.42 | 7.87 |
| DIF_cap_tissue | Stage II cap tissue | 5.41 | 2.56 | 8.26 |
| DIF_gill_tissue | Stage II gill tissue | 5.46 | 2.58 | 8.34 |
| YFB_stipe_center | Young fruiting body stipe center | 9.28 | 4.59 | 13.96 |
| YFB_stipe_shell | Young fruiting body stipe shell | 13.25 | 7.04 | 19.46 |
| YFB_stipe_skin | Young fruiting body stipe skin | 14.23 | 7.43 | 21.02 |
| YFB_cap_skin | Young fruiting body cap skin | 7.24 | 3.56 | 10.92 |
| YFB_cap_tissue | Young fruiting body cap tissue | 8.11 | 4.08 | 12.14 |
| YFB_gill_tissue | Young fruiting body gill tissue | 5.39 | 2.55 | 8.23 |
| YFB_veil | Young fruiting body veil | 5.32 | 2.52 | 8.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.963578 | no |
| Casing | YFB_stipe_center | 0.143064 | no |
| Casing | YFB_stipe_shell | 0.009123 | yes |
| Casing | YFB_stipe_skin | 0.005671 | yes |
| Casing | YFB_cap_skin | 0.511124 | no |
| Casing | YFB_cap_tissue | 0.295038 | no |
| Casing | YFB_gill_tissue | 0.977599 | no |
| Casing | YFB_veil | 0.990527 | no |
| Casing | Initials | 0.299355 | no |
| Casing | Pileal_Stipeal_center | 0.696205 | no |
| Casing | Pileal_Stipeal_shell | 0.915905 | no |
| Casing | DIF_stipe_center | 0.829610 | no |
| Casing | DIF_stipe_shell | 0.492591 | no |
| Casing | DIF_stipe_skin | 0.923966 | no |
| Casing | DIF_cap_skin | 0.975187 | no |
| Casing | DIF_cap_tissue | 0.974478 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.155834 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.006032 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.004548 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.551114 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.317334 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.985896 | no |
| DIF_gill_tissue | YFB_veil | 0.973844 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.397915 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.294553 | no |
| YFB_stipe_center | YFB_cap_skin | 0.630973 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.818730 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.165674 | no |
| YFB_stipe_center | YFB_veil | 0.160771 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.912675 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.086914 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.166714 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.006032 | yes |
| YFB_stipe_shell | YFB_veil | 0.008791 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.050294 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.104748 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.003765 | yes |
| YFB_stipe_skin | YFB_veil | 0.002084 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.850238 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.534381 | no |
| YFB_cap_skin | YFB_veil | 0.514373 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.319589 | no |
| YFB_cap_tissue | YFB_veil | 0.302791 | no |
| YFB_gill_tissue | YFB_veil | 0.986319 | no |
| Initials | DIF_gill_tissue | 0.228817 | no |
| Initials | YFB_stipe_center | 0.004160 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.000613 | yes |
| Initials | YFB_cap_skin | 0.036455 | yes |
| Initials | YFB_cap_tissue | 0.013186 | yes |
| Initials | YFB_gill_tissue | 0.258723 | no |
| Initials | YFB_veil | 0.275834 | no |
| Initials | Pileal_Stipeal_center | 0.656241 | no |
| Initials | Pileal_Stipeal_shell | 0.410474 | no |
| Initials | DIF_stipe_center | 0.121717 | no |
| Initials | DIF_stipe_shell | 0.033444 | yes |
| Initials | DIF_stipe_skin | 0.195326 | no |
| Initials | DIF_cap_skin | 0.326142 | no |
| Initials | DIF_cap_tissue | 0.253995 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.621080 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.026461 | yes |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_cap_skin | 0.171933 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.070137 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.651760 | no |
| Pileal_Stipeal_center | YFB_veil | 0.677908 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.822248 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.427938 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.158500 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.561491 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.739591 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.648744 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.860050 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.081058 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.001625 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.001140 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.366862 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.182683 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.882669 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.900134 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.684739 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.347228 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.805758 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.943659 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.877040 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.872245 | no |
| DIF_stipe_center | YFB_stipe_center | 0.298605 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.018896 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.009446 | yes |
| DIF_stipe_center | YFB_cap_skin | 0.745865 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.510021 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.857025 | no |
| DIF_stipe_center | YFB_veil | 0.838877 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.736935 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.917073 | no |
| DIF_stipe_center | DIF_cap_skin | 0.786482 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.862180 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.536250 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.600888 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.070317 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.038495 | yes |
| DIF_stipe_shell | YFB_cap_skin | 0.996337 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.840680 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.523497 | no |
| DIF_stipe_shell | YFB_veil | 0.502327 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.599848 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.440996 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.533921 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.964480 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.192529 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.006742 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.004548 | yes |
| DIF_stipe_skin | YFB_cap_skin | 0.613804 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.372742 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.950502 | no |
| DIF_stipe_skin | YFB_veil | 0.935910 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.891092 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.954946 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.934353 | no |
| DIF_cap_skin | YFB_stipe_center | 0.117635 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.004928 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.001625 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.459201 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.251757 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.951414 | no |
| DIF_cap_skin | YFB_veil | 0.964258 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.946887 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.989318 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.163031 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.007092 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.004928 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.544343 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.321090 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.995900 | no |
| DIF_cap_tissue | YFB_veil | 0.982792 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|086860 MASQSTGTVICTCGCNKLVSYPTRRAHVAQTRTEESSTSRTVGNKRPHSDFPGDHSAGPGNKRRHTVGPESNEIF NIDNPSGNHDYQTPSTPTTSPSRPVRVAEINNRTLLLRWGDHLTRPASYPQLGQATNNLEDNELGRNGGDVSATY PMEYTDEDEINDEGEAGGEEDGTSDGESEVEEGQSEGESQDEDAHEDEDADEGEDADEDEDADEEEEEEGSGIDE GEESRPSNADIAVISLWDHIDKDYVRFMMTTDESLGDTDLSLLRKYVLKVEDHLTERTFERLAFAFPGASHSSLK ITKKHVRLLSGFQPIPYSCCINSCVCYTGPYANLTECPHCQELRLDDRNRPRKVFDYIPLIPRLRAMAANRQHAE KMRYRARFEHQPGVVSDIFDGLHYQSLLTRVVPASGDQPFFYFTDERDIALGLSTDGFGPFKRCDKTCWPVILFN YNLPPDIRFQKQYCINVGTIPGPKKPWDMDSFLWPLMQELIQLEVGVRAFDGITKSLFLLHAYLLLVFGDIPV* |
| Coding | >AgabiH97|086860 ATGGCGTCCCAAAGTACTGGTACAGTCATATGCACATGTGGCTGTAACAAACTTGTTTCTTATCCCACAAGACGA GCGCATGTTGCACAAACCCGAACAGAAGAGTCATCAACTAGCCGTACCGTTGGAAACAAGAGGCCCCACTCAGAT TTTCCTGGAGACCACAGCGCAGGACCAGGGAATAAAAGGAGGCACACCGTTGGGCCTGAATCCAATGAAATCTTC AACATCGACAATCCATCAGGCAACCATGACTATCAGACTCCTAGCACACCCACTACATCTCCCAGTCGACCGGTT CGCGTCGCAGAAATCAACAACCGTACACTTTTGTTGCGATGGGGAGACCACCTTACTCGCCCTGCCAGCTACCCT CAGCTAGGGCAAGCCACCAATAACCTGGAAGATAATGAGCTGGGAAGGAACGGCGGTGATGTTTCAGCGACGTAC CCCATGGAATATACCGATGAAGATGAGATCAATGATGAAGGCGAGGCCGGGGGTGAAGAAGATGGGACTAGCGAT GGTGAAAGTGAAGTTGAGGAGGGTCAAAGTGAGGGTGAGAGTCAAGATGAAGACGCCCATGAAGATGAAGACGCC GATGAAGGTGAAGACGCCGATGAAGATGAAGACGCAGATGAAGAGGAAGAGGAAGAAGGGTCTGGGATTGATGAA GGCGAAGAAAGTCGGCCAAGTAACGCGGATATTGCTGTGATCTCACTTTGGGATCACATCGATAAAGATTATGTT CGTTTTATGATGACAACAGACGAGTCCCTGGGTGATACCGACCTCTCTTTATTACGCAAATATGTCCTCAAAGTT GAGGACCACCTGACGGAGCGAACCTTCGAACGACTTGCCTTTGCTTTTCCGGGTGCTTCTCACAGCTCACTCAAG ATAACCAAGAAGCATGTTCGCTTGCTCTCGGGTTTTCAACCTATACCATACAGCTGTTGTATCAACAGCTGCGTC TGCTACACTGGTCCATACGCCAATCTCACTGAATGCCCTCACTGTCAGGAGCTCAGGCTGGATGATCGGAATAGA CCCCGCAAGGTGTTTGATTACATCCCTCTAATTCCACGCCTTCGAGCCATGGCTGCAAATCGTCAACACGCCGAA AAAATGCGCTACCGGGCCAGATTTGAACACCAGCCTGGAGTCGTGTCAGATATTTTTGATGGGCTTCACTATCAG TCATTGCTGACCAGAGTCGTACCTGCGAGTGGTGACCAACCGTTTTTCTACTTCACTGATGAACGCGATATTGCT CTTGGTCTCTCCACCGATGGCTTTGGTCCGTTTAAGCGATGTGACAAGACGTGCTGGCCAGTCATTCTCTTTAAC TACAATCTTCCCCCCGACATACGTTTTCAAAAGCAATATTGTATCAATGTGGGGACAATCCCAGGCCCTAAGAAG CCCTGGGACATGGACTCGTTTCTCTGGCCGCTTATGCAGGAGCTAATTCAACTTGAAGTTGGAGTTAGGGCTTTT GACGGAATCACTAAATCACTCTTTTTACTCCATGCTTATCTTCTTTTGGTTTTTGGTGATATTCCGGTGTAG |
| Transcript | >AgabiH97|086860 ATGGCGTCCCAAAGTACTGGTACAGTCATATGCACATGTGGCTGTAACAAACTTGTTTCTTATCCCACAAGACGA GCGCATGTTGCACAAACCCGAACAGAAGAGTCATCAACTAGCCGTACCGTTGGAAACAAGAGGCCCCACTCAGAT TTTCCTGGAGACCACAGCGCAGGACCAGGGAATAAAAGGAGGCACACCGTTGGGCCTGAATCCAATGAAATCTTC AACATCGACAATCCATCAGGCAACCATGACTATCAGACTCCTAGCACACCCACTACATCTCCCAGTCGACCGGTT CGCGTCGCAGAAATCAACAACCGTACACTTTTGTTGCGATGGGGAGACCACCTTACTCGCCCTGCCAGCTACCCT CAGCTAGGGCAAGCCACCAATAACCTGGAAGATAATGAGCTGGGAAGGAACGGCGGTGATGTTTCAGCGACGTAC CCCATGGAATATACCGATGAAGATGAGATCAATGATGAAGGCGAGGCCGGGGGTGAAGAAGATGGGACTAGCGAT GGTGAAAGTGAAGTTGAGGAGGGTCAAAGTGAGGGTGAGAGTCAAGATGAAGACGCCCATGAAGATGAAGACGCC GATGAAGGTGAAGACGCCGATGAAGATGAAGACGCAGATGAAGAGGAAGAGGAAGAAGGGTCTGGGATTGATGAA GGCGAAGAAAGTCGGCCAAGTAACGCGGATATTGCTGTGATCTCACTTTGGGATCACATCGATAAAGATTATGTT CGTTTTATGATGACAACAGACGAGTCCCTGGGTGATACCGACCTCTCTTTATTACGCAAATATGTCCTCAAAGTT GAGGACCACCTGACGGAGCGAACCTTCGAACGACTTGCCTTTGCTTTTCCGGGTGCTTCTCACAGCTCACTCAAG ATAACCAAGAAGCATGTTCGCTTGCTCTCGGGTTTTCAACCTATACCATACAGCTGTTGTATCAACAGCTGCGTC TGCTACACTGGTCCATACGCCAATCTCACTGAATGCCCTCACTGTCAGGAGCTCAGGCTGGATGATCGGAATAGA CCCCGCAAGGTGTTTGATTACATCCCTCTAATTCCACGCCTTCGAGCCATGGCTGCAAATCGTCAACACGCCGAA AAAATGCGCTACCGGGCCAGATTTGAACACCAGCCTGGAGTCGTGTCAGATATTTTTGATGGGCTTCACTATCAG TCATTGCTGACCAGAGTCGTACCTGCGAGTGGTGACCAACCGTTTTTCTACTTCACTGATGAACGCGATATTGCT CTTGGTCTCTCCACCGATGGCTTTGGTCCGTTTAAGCGATGTGACAAGACGTGCTGGCCAGTCATTCTCTTTAAC TACAATCTTCCCCCCGACATACGTTTTCAAAAGCAATATTGTATCAATGTGGGGACAATCCCAGGCCCTAAGAAG CCCTGGGACATGGACTCGTTTCTCTGGCCGCTTATGCAGGAGCTAATTCAACTTGAAGTTGGAGTTAGGGCTTTT GACGGAATCACTAAATCACTCTTTTTACTCCATGCTTATCTTCTTTTGGTTTTTGGTGATATTCCGGTGTAG |
| Gene | >AgabiH97|086860 ATGGCGTCCCAAAGTACTGGTACAGTCATATGCACATGTGGCTGTAACAAACTTGTTTCTTATCCCACAAGACGA GCGCATGTTGCACAAACCCGAACAGAAGAGTCATCAACTAGCCGTACCGTTGGAAACAAGAGGCCCCACTCAGAT TTTCCTGGAGACCACAGCGCAGGACCAGGGAATAAAAGGAGGCACACCGTTGGGCCTGAATCCAATGAAATCTTC AACATCGACAATCCATCAGGCAACCATGACTATCAGACTCCTAGCACACCCACTACATCTCCCAGTCGACCGGTT CGCGTCGCAGAAATCAACAACCGTACACTTTTGTTGCGATGGGGAGACCACCTTACTCGCCCTGCCAGCTACCCT CAGCTAGGGCAAGCCACCAATAACCTGGAAGATAATGAGCTGGGAAGGAACGGCGGTGATGTTTCAGCGACGTAC CCCATGGAATATACCGATGAAGATGAGATCAATGATGAAGGCGAGGCCGGGGGTGAAGAAGATGGGACTAGCGAT GGTGAAAGTGAAGTTGAGGAGGGTCAAAGTGAGGGTGAGAGTCAAGATGAAGACGCCCATGAAGATGAAGACGCC GATGAAGGTGAAGACGCCGATGAAGATGAAGACGCAGATGAAGAGGAAGAGGAAGAAGGGTCTGGGATTGATGAA GGCGAAGAAAGTCGGCCAAGTAACGCGGATATTGCTGTGATCTCACTTTGGGATCACATCGATAAAGATTATGTT CGTTTTATGATGACAACAGGTGCAGTTTTTTTTCGATTCTTTGGTTGTTTATGTTACTCATCTCATTGTAGACGA GTCCCTGGGTGATACCGACCTCTCTTTATTACGCAAATATGTCCTCAAAGTTGAGGACCACCTGACGGAGCGAAC CTTCGAACGACTTGCCTTTGCTTTTCCGGGTGCTTCTCACAGCTCACTCAAGATAACCAAGAAGCATGTTCGCTT GCTCTCGGGTTTTCAACCTATACCATACAGCTGTTGTATCAACAGCTGCGTCTGCTACACTGGTCCATACGCCAA TCTCACTGAATGCCCTCACTGTCAGGAGCTCAGGCTGGATGATCGGAATAGACCCCGCAAGGTGTTTGATTACAT CCCTCTAATTCCACGCCTTCGAGCCATGGCTGCAAATCGTCAACACGCCGAAAAAATGCGCTACCGGGCCAGATT TGAACACCAGCCTGGAGTCGTGTCAGATATTTTTGATGGGCTTCACTATCAGTCATTGCTGACCAGAGTCGTACC TGCGAGTGGTGACCAACCGTTTTTCTACTTCACTGATGAACGCGATATTGCTCTTGGTCTCTCCACCGATGGCTT TGGTCCGTTTAAGCGATGTGACAAGACGTGCTGGCCAGTCATTCTCTTTAACTACAATCTTCCCCCCGACATACG TTTTCAAAAGCAATATTGTATCAATGTGGGGACAATCCCAGGCCCTAAGAAGCCCTGGGACATGGACTCGTTTCT CTGGCCGCTTATGCAGGAGCTAATTCAACTTGAAGTTGGAGTTAGGGCTTTTGACGGAATCACTAAATCACTCTT TTTACTCCATGCTTATCTTCTTTTGGTTTTTGGTGATATTCCGGTGTAG |