Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|086340
Gene name
Locationscaffold_5:2015480..2016643
Strand-
Gene length (bp)1163
Transcript length (bp)1107
Coding sequence length (bp)1107
Protein length (aa) 369

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00010 HLH Helix-loop-helix DNA-binding domain 2.3E-05 211 305

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0046983 protein dimerization activity Yes
GO:0003674 molecular_function No
GO:0005515 protein binding No
GO:0005488 binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3625 0.9436 0.0086 0.0114 0.4049 0.0012 0.0689 0.04 0.0399 0.0544

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-loop-helix

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup6859
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|086340
Agaricus bisporus var bisporus H97 AgabiH97|086340 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|483_3

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|086340
MDLLSPQESHAFQAFLSSMDYTDLSPTEWAMLNGPNQPDDGDIFPRSSQALAKATKDLMSGRWDSFSQQLQESNP
NQPHLQHSNDYGSHRSRCETFPFLNPKSHLQQPALSLSPHTHDFRSQLASSSETSTTTTPASPHPPFNFPDQTLS
HSIQLPQAQLHQSLSRHRRASSPTAKRSSVTHTVKRRKPSPSTTPSVASLAKQSLLSPSQKKANHIQSEQKRRAN
IRRGYEALCDTVPALRDAIREEEEGEVRMSQLESGSSGKSSRSKRKRRDGGGDGDKMDGRAGPRSENVVLSKTIE
YIHDLINERSALLTRLQRAKMALSAGHPALETTCVPLWEREWKGGEGKFIGDGVDDEDENNEDGCDSS*
Coding >AgabiH97|086340
ATGGACCTCCTCTCGCCCCAAGAGTCGCATGCCTTTCAGGCCTTTCTCTCCTCCATGGACTACACTGATCTCTCA
CCGACTGAATGGGCTATGCTCAACGGCCCCAACCAACCCGACGACGGCGACATCTTTCCCCGCTCATCGCAGGCC
CTAGCCAAGGCTACTAAGGATCTTATGTCAGGGCGTTGGGACTCTTTCTCGCAGCAACTGCAAGAGTCCAATCCC
AACCAACCACACCTTCAACATTCAAATGACTATGGATCCCATCGTTCCAGATGCGAAACTTTTCCGTTTCTCAAT
CCGAAATCACATCTCCAACAGCCTGCGTTGTCACTCTCACCTCACACACACGACTTTCGTTCGCAATTAGCTTCG
TCTTCGGAAACGTCGACGACGACTACGCCTGCGAGTCCACATCCTCCTTTTAATTTCCCAGATCAAACGTTATCG
CATAGTATTCAGCTTCCTCAGGCACAACTTCATCAATCTCTCTCACGGCATCGACGCGCGTCATCGCCTACAGCG
AAGCGATCTTCTGTTACTCACACTGTGAAACGCCGCAAACCTTCTCCATCCACTACACCATCCGTCGCATCACTT
GCTAAACAATCGTTATTGTCACCTTCACAGAAAAAAGCGAATCATATTCAATCTGAACAGAAACGACGTGCGAAT
ATTAGAAGGGGGTATGAAGCTTTGTGTGATACTGTTCCTGCGTTGAGAGATGCTATAAGAGAAGAGGAGGAGGGG
GAAGTTAGGATGAGTCAGTTGGAGTCGGGATCGTCTGGGAAATCGTCGAGATCGAAACGGAAGAGGAGGGATGGA
GGTGGGGATGGTGATAAGATGGATGGTCGTGCAGGTCCACGAAGTGAAAACGTTGTCTTGTCGAAAACCATCGAA
TACATTCATGATCTTATTAACGAGCGTTCGGCTCTTTTAACGAGATTGCAACGGGCTAAGATGGCGTTATCGGCT
GGACATCCTGCACTTGAAACGACATGTGTGCCGCTTTGGGAACGGGAGTGGAAGGGCGGTGAAGGAAAGTTTATT
GGTGATGGTGTAGATGATGAAGATGAGAATAATGAAGACGGCTGCGACAGCTCGTAG
Transcript >AgabiH97|086340
ATGGACCTCCTCTCGCCCCAAGAGTCGCATGCCTTTCAGGCCTTTCTCTCCTCCATGGACTACACTGATCTCTCA
CCGACTGAATGGGCTATGCTCAACGGCCCCAACCAACCCGACGACGGCGACATCTTTCCCCGCTCATCGCAGGCC
CTAGCCAAGGCTACTAAGGATCTTATGTCAGGGCGTTGGGACTCTTTCTCGCAGCAACTGCAAGAGTCCAATCCC
AACCAACCACACCTTCAACATTCAAATGACTATGGATCCCATCGTTCCAGATGCGAAACTTTTCCGTTTCTCAAT
CCGAAATCACATCTCCAACAGCCTGCGTTGTCACTCTCACCTCACACACACGACTTTCGTTCGCAATTAGCTTCG
TCTTCGGAAACGTCGACGACGACTACGCCTGCGAGTCCACATCCTCCTTTTAATTTCCCAGATCAAACGTTATCG
CATAGTATTCAGCTTCCTCAGGCACAACTTCATCAATCTCTCTCACGGCATCGACGCGCGTCATCGCCTACAGCG
AAGCGATCTTCTGTTACTCACACTGTGAAACGCCGCAAACCTTCTCCATCCACTACACCATCCGTCGCATCACTT
GCTAAACAATCGTTATTGTCACCTTCACAGAAAAAAGCGAATCATATTCAATCTGAACAGAAACGACGTGCGAAT
ATTAGAAGGGGGTATGAAGCTTTGTGTGATACTGTTCCTGCGTTGAGAGATGCTATAAGAGAAGAGGAGGAGGGG
GAAGTTAGGATGAGTCAGTTGGAGTCGGGATCGTCTGGGAAATCGTCGAGATCGAAACGGAAGAGGAGGGATGGA
GGTGGGGATGGTGATAAGATGGATGGTCGTGCAGGTCCACGAAGTGAAAACGTTGTCTTGTCGAAAACCATCGAA
TACATTCATGATCTTATTAACGAGCGTTCGGCTCTTTTAACGAGATTGCAACGGGCTAAGATGGCGTTATCGGCT
GGACATCCTGCACTTGAAACGACATGTGTGCCGCTTTGGGAACGGGAGTGGAAGGGCGGTGAAGGAAAGTTTATT
GGTGATGGTGTAGATGATGAAGATGAGAATAATGAAGACGGCTGCGACAGCTCGTAG
Gene >AgabiH97|086340
ATGGACCTCCTCTCGCCCCAAGAGTCGCATGCCTTTCAGGCCTTTCTCTCCTCCATGGACTACACTGATCTCTCA
CCGACTGAATGGGCTATGCTCAACGGCCCCAACCAACCCGACGACGGCGACATCTTTCCCCGCTCATCGCAGGCC
CTAGCCAAGGCTACTAAGGATCTTATGTCAGGGCGTTGGGACTCTTTCTCGCAGCAACTGCAAGAGTCCAATCCC
AACCAACCACACCTTCAACATTCAAATGACTATGGATCCCATCGTTCCAGATGCGAAACTTTTCCGTTTCTCAAT
CCGAAATCACATCTCCAACAGCCTGCGTTGTCACTCTCACCTCACACACACGACTTTCGTTCGCAATTAGCTTCG
TCTTCGGAAACGTCGACGACGACTACGCCTGCGAGTCCACATCCTCCTTTTAATTTCCCAGATCAAACGTTATCG
CATAGTATTCAGCTTCCTCAGGCACAACTTCATCAATCTCTCTCACGGCATCGACGCGCGTCATCGCCTACAGCG
AAGCGATCTTCTGTTACTCACACTGTGAAACGCCGCAAACCTTCTCCATCCACTACACCATCCGTCGCATCACTT
GCTAAACAATCGTTATTGTCACCTTCACAGAAAAAAGCGAATCATATTCAATCTGAACAGAAACGACGTGCGAAT
ATTAGAAGGGGGTATGAAGCTTTGTGTGATACTGTTCCTGCGTTGAGAGATGCTATAAGAGAAGAGGAGGAGGGG
GAAGTTAGGATGAGTCAGTTGGAGTCGGGATCGTCTGGGAAATCGTCGAGATCGAAACGGAAGAGGAGGGATGGA
GGTGGGGATGGTGATAAGATGGATGGTCGTGCAGGTCCACGAAGTGAAAACGTTGTCTTGTCGAAAAGTATGTTT
TATCCATACTCATCAACTAGAGATGTTCGCTGATTGGGGTTTTTTCAGCCATCGAATACATTCATGATCTTATTA
ACGAGCGTTCGGCTCTTTTAACGAGATTGCAACGGGCTAAGATGGCGTTATCGGCTGGACATCCTGCACTTGAAA
CGACATGTGTGCCGCTTTGGGAACGGGAGTGGAAGGGCGGTGAAGGAAAGTTTATTGGTGATGGTGTAGATGATG
AAGATGAGAATAATGAAGACGGCTGCGACAGCTCGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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