© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|085580 |
| Gene name | |
| Location | scaffold_5:1838387..1840456 |
| Strand | - |
| Gene length (bp) | 2069 |
| Transcript length (bp) | 1230 |
| Coding sequence length (bp) | 1230 |
| Protein length (aa) | 410 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 1.4E-46 | 81 | 406 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q31125|S39A7_MOUSE | Zinc transporter SLC39A7 OS=Mus musculus GN=Slc39a7 PE=1 SV=2 | 85 | 382 | 8.0E-48 |
| sp|Q9XUC4|HKE41_CAEEL | Histidine-rich membrane protein KE4 homolog 1 OS=Caenorhabditis elegans GN=hke-4.1 PE=2 SV=2 | 71 | 409 | 1.0E-46 |
| sp|A8WMY3|HKE41_CAEBR | Histidine-rich membrane protein KE4 homolog 1 OS=Caenorhabditis briggsae GN=hke-4.1 PE=3 SV=2 | 71 | 409 | 1.0E-45 |
| sp|Q5TJF6|S39A7_CANLF | Zinc transporter SLC39A7 OS=Canis lupus familiaris GN=SLC39A7 PE=3 SV=1 | 59 | 382 | 3.0E-42 |
| sp|Q9XTQ7|HKE42_CAEEL | Histidine-rich membrane protein KE4 homolog 2 OS=Caenorhabditis elegans GN=hke-4.2 PE=3 SV=2 | 81 | 409 | 5.0E-41 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q31125|S39A7_MOUSE | Zinc transporter SLC39A7 OS=Mus musculus GN=Slc39a7 PE=1 SV=2 | 85 | 382 | 8.0E-48 |
| sp|Q9XUC4|HKE41_CAEEL | Histidine-rich membrane protein KE4 homolog 1 OS=Caenorhabditis elegans GN=hke-4.1 PE=2 SV=2 | 71 | 409 | 1.0E-46 |
| sp|A8WMY3|HKE41_CAEBR | Histidine-rich membrane protein KE4 homolog 1 OS=Caenorhabditis briggsae GN=hke-4.1 PE=3 SV=2 | 71 | 409 | 1.0E-45 |
| sp|Q5TJF6|S39A7_CANLF | Zinc transporter SLC39A7 OS=Canis lupus familiaris GN=SLC39A7 PE=3 SV=1 | 59 | 382 | 3.0E-42 |
| sp|Q9XTQ7|HKE42_CAEEL | Histidine-rich membrane protein KE4 homolog 2 OS=Caenorhabditis elegans GN=hke-4.2 PE=3 SV=2 | 81 | 409 | 5.0E-41 |
| sp|Q92504|S39A7_HUMAN | Zinc transporter SLC39A7 OS=Homo sapiens GN=SLC39A7 PE=1 SV=2 | 59 | 406 | 2.0E-40 |
| sp|P40544|YKE4_YEAST | Zinc transporter YKE4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKE4 PE=1 SV=1 | 72 | 404 | 2.0E-39 |
| sp|Q5RFD5|S39A7_PONAB | Zinc transporter SLC39A7 OS=Pongo abelii GN=SLC39A7 PE=2 SV=1 | 59 | 382 | 5.0E-38 |
| sp|A8X482|HKE42_CAEBR | Histidine-rich membrane protein KE4 homolog 2 OS=Caenorhabditis briggsae GN=hke-4.2 PE=3 SV=2 | 82 | 409 | 2.0E-37 |
| sp|Q9VAF0|S39AD_DROME | Zinc transporter ZIP13 homolog OS=Drosophila melanogaster GN=Zip99C PE=2 SV=1 | 73 | 402 | 1.0E-36 |
| sp|Q9V3A4|CSUP_DROME | Protein catecholamines up OS=Drosophila melanogaster GN=Catsup PE=2 SV=1 | 80 | 406 | 3.0E-35 |
| sp|Q9UT11|YLW3_SCHPO | Uncharacterized zinc transporter P8A3.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP8A3.03 PE=3 SV=1 | 73 | 380 | 5.0E-35 |
| sp|Q2M1K6|S39AD_RAT | Zinc transporter ZIP13 OS=Rattus norvegicus GN=Slc39a13 PE=2 SV=1 | 84 | 381 | 2.0E-31 |
| sp|Q5ZI20|S39AD_CHICK | Zinc transporter ZIP13 OS=Gallus gallus GN=SLC39A13 PE=2 SV=1 | 81 | 408 | 4.0E-31 |
| sp|Q8BZH0|S39AD_MOUSE | Zinc transporter ZIP13 OS=Mus musculus GN=Slc39a13 PE=2 SV=1 | 84 | 406 | 5.0E-31 |
| sp|Q8AW42|S39AD_DANRE | Zinc transporter ZIP13 OS=Danio rerio GN=slc39a13 PE=2 SV=1 | 108 | 406 | 1.0E-30 |
| sp|Q96H72|S39AD_HUMAN | Zinc transporter ZIP13 OS=Homo sapiens GN=SLC39A13 PE=1 SV=3 | 81 | 404 | 3.0E-28 |
| sp|Q9PUB8|S39A7_DANRE | Zinc transporter Slc39a7 (Fragment) OS=Danio rerio GN=slc39a7 PE=2 SV=1 | 80 | 291 | 2.0E-27 |
| sp|A5D7H1|S39AD_BOVIN | Zinc transporter ZIP13 OS=Bos taurus GN=SLC39A13 PE=2 SV=1 | 81 | 404 | 2.0E-26 |
| sp|Q504Y0|S39AC_HUMAN | Zinc transporter ZIP12 OS=Homo sapiens GN=SLC39A12 PE=2 SV=3 | 108 | 378 | 8.0E-25 |
| sp|Q9M647|IAR1_ARATH | IAA-alanine resistance protein 1 OS=Arabidopsis thaliana GN=IAR1 PE=1 SV=3 | 96 | 384 | 2.0E-24 |
| sp|Q5R6I6|S39AD_PONAB | Zinc transporter ZIP13 OS=Pongo abelii GN=SLC39A13 PE=2 SV=1 | 233 | 404 | 3.0E-24 |
| sp|Q08E40|S39AC_BOVIN | Zinc transporter ZIP12 OS=Bos taurus GN=SLC39A12 PE=2 SV=1 | 108 | 409 | 2.0E-20 |
| sp|Q95KA5|S39AC_MACFA | Zinc transporter ZIP12 OS=Macaca fascicularis GN=SLC39A12 PE=2 SV=1 | 108 | 321 | 3.0E-20 |
| sp|Q5FWH7|S39AC_MOUSE | Zinc transporter ZIP12 OS=Mus musculus GN=Slc39a12 PE=1 SV=1 | 108 | 378 | 6.0E-20 |
| sp|A4IGY6|S39AE_XENTR | Zinc transporter ZIP14 OS=Xenopus tropicalis GN=slc39a14 PE=2 SV=1 | 113 | 394 | 9.0E-19 |
| sp|A0JPN2|S39A4_RAT | Zinc transporter ZIP4 OS=Rattus norvegicus GN=Slc39a4 PE=2 SV=1 | 108 | 340 | 2.0E-18 |
| sp|Q78IQ7|S39A4_MOUSE | Zinc transporter ZIP4 OS=Mus musculus GN=Slc39a4 PE=1 SV=1 | 108 | 340 | 7.0E-18 |
| sp|Q9VSL7|FOI_DROME | Zinc transporter foi OS=Drosophila melanogaster GN=foi PE=1 SV=3 | 239 | 409 | 3.0E-17 |
| sp|Q75N73|S39AE_MOUSE | Zinc transporter ZIP14 OS=Mus musculus GN=Slc39a14 PE=1 SV=1 | 95 | 340 | 1.0E-16 |
| sp|Q91W10|S39A8_MOUSE | Zinc transporter ZIP8 OS=Mus musculus GN=Slc39a8 PE=2 SV=1 | 108 | 337 | 1.0E-16 |
| sp|Q6P5F6|S39AA_MOUSE | Zinc transporter ZIP10 OS=Mus musculus GN=Slc39a10 PE=1 SV=1 | 236 | 409 | 2.0E-16 |
| sp|Q9ULF5|S39AA_HUMAN | Zinc transporter ZIP10 OS=Homo sapiens GN=SLC39A10 PE=1 SV=2 | 236 | 409 | 2.0E-16 |
| sp|Q6PEH9|S39AA_DANRE | Zinc transporter ZIP10 OS=Danio rerio GN=slc39a10 PE=2 SV=1 | 236 | 406 | 3.0E-16 |
| sp|A5D7L5|S39AE_BOVIN | Zinc transporter ZIP14 OS=Bos taurus GN=SLC39A14 PE=2 SV=1 | 95 | 340 | 3.0E-16 |
| sp|Q5FVQ0|S39A8_RAT | Zinc transporter ZIP8 OS=Rattus norvegicus GN=Slc39a8 PE=2 SV=1 | 108 | 337 | 4.0E-16 |
| sp|Q15043|S39AE_HUMAN | Zinc transporter ZIP14 OS=Homo sapiens GN=SLC39A14 PE=1 SV=3 | 95 | 340 | 4.0E-16 |
| sp|Q1KZG0|S39A4_BOVIN | Zinc transporter ZIP4 OS=Bos taurus GN=SLC39A4 PE=1 SV=1 | 113 | 379 | 8.0E-16 |
| sp|Q5RAB7|S39AE_PONAB | Zinc transporter ZIP14 OS=Pongo abelii GN=SLC39A14 PE=2 SV=2 | 95 | 340 | 1.0E-15 |
| sp|Q9D856|S39A5_MOUSE | Zinc transporter ZIP5 OS=Mus musculus GN=Slc39a5 PE=1 SV=1 | 108 | 383 | 2.0E-14 |
| sp|Q5R9M9|S39A6_PONAB | Zinc transporter ZIP6 OS=Pongo abelii GN=SLC39A6 PE=2 SV=1 | 236 | 406 | 1.0E-13 |
| sp|Q13433|S39A6_HUMAN | Zinc transporter ZIP6 OS=Homo sapiens GN=SLC39A6 PE=1 SV=3 | 236 | 406 | 1.0E-13 |
| sp|Q8C145|S39A6_MOUSE | Zinc transporter ZIP6 OS=Mus musculus GN=Slc39a6 PE=1 SV=1 | 236 | 384 | 2.0E-13 |
| sp|Q4V887|S39A6_RAT | Zinc transporter ZIP6 OS=Rattus norvegicus GN=Slc39a6 PE=1 SV=1 | 236 | 384 | 2.0E-13 |
| sp|Q6ZMH5|S39A5_HUMAN | Zinc transporter ZIP5 OS=Homo sapiens GN=SLC39A5 PE=1 SV=3 | 111 | 294 | 4.0E-12 |
| sp|Q6P5W5|S39A4_HUMAN | Zinc transporter ZIP4 OS=Homo sapiens GN=SLC39A4 PE=1 SV=3 | 108 | 380 | 2.0E-11 |
| sp|Q9C0K1|S39A8_HUMAN | Zinc transporter ZIP8 OS=Homo sapiens GN=SLC39A8 PE=2 SV=1 | 237 | 337 | 3.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0006810 | transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006812 | cation transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 151 | 168 | 17 |
| 2 | 255 | 277 | 22 |
| 3 | 305 | 327 | 22 |
| 4 | 357 | 379 | 22 |
| 5 | 388 | 407 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 29.20 | 16.17 | 42.24 |
| Initials | Initials knots | 32.23 | 18.21 | 46.26 |
| Pileal_Stipeal_center | Stage I stipe center | 59.02 | 35.03 | 83.01 |
| Pileal_Stipeal_shell | Stage I stipe shell | 78.85 | 46.90 | 110.80 |
| DIF_stipe_center | Stage II stipe center | 50.62 | 29.51 | 71.72 |
| DIF_stipe_shell | Stage II stipe shell | 44.73 | 25.88 | 63.58 |
| DIF_stipe_skin | Stage II stipe skin | 48.38 | 28.16 | 68.60 |
| DIF_cap_skin | Stage II cap skin | 92.58 | 55.62 | 129.54 |
| DIF_cap_tissue | Stage II cap tissue | 95.60 | 57.49 | 133.71 |
| DIF_gill_tissue | Stage II gill tissue | 90.81 | 54.64 | 126.99 |
| YFB_stipe_center | Young fruiting body stipe center | 19.18 | 10.07 | 28.28 |
| YFB_stipe_shell | Young fruiting body stipe shell | 18.85 | 9.89 | 27.81 |
| YFB_stipe_skin | Young fruiting body stipe skin | 35.84 | 20.25 | 51.44 |
| YFB_cap_skin | Young fruiting body cap skin | 80.55 | 48.32 | 112.79 |
| YFB_cap_tissue | Young fruiting body cap tissue | 82.11 | 49.31 | 114.91 |
| YFB_gill_tissue | Young fruiting body gill tissue | 76.66 | 45.81 | 107.52 |
| YFB_veil | Young fruiting body veil | 83.86 | 50.10 | 117.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.221032 | no |
| Casing | YFB_stipe_shell | 0.192285 | no |
| Casing | YFB_stipe_skin | 0.623771 | no |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.852290 | no |
| Casing | Pileal_Stipeal_center | 0.010728 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.061844 | no |
| Casing | DIF_stipe_shell | 0.173970 | no |
| Casing | DIF_stipe_skin | 0.090496 | no |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.000613 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.778305 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.822573 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.665887 | no |
| DIF_gill_tissue | YFB_veil | 0.866499 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.978251 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.037364 | yes |
| YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_center | YFB_veil | 0.000613 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.031557 | yes |
| YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_veil | 0.000613 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.002951 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.002525 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.004160 | yes |
| YFB_stipe_skin | YFB_veil | 0.002084 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.971535 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.926006 | no |
| YFB_cap_skin | YFB_veil | 0.939121 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.891315 | no |
| YFB_cap_tissue | YFB_veil | 0.969566 | no |
| YFB_gill_tissue | YFB_veil | 0.845246 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.100411 | no |
| Initials | YFB_stipe_shell | 0.088442 | no |
| Initials | YFB_stipe_skin | 0.833112 | no |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.027698 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.134719 | no |
| Initials | DIF_stipe_shell | 0.327387 | no |
| Initials | DIF_stipe_skin | 0.192285 | no |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.118699 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.077879 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.320818 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.282699 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.436280 | no |
| Pileal_Stipeal_center | YFB_veil | 0.240070 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.371817 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.715442 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.406596 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.602498 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.097943 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.073043 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.731405 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.002951 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.968647 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.936027 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.958545 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.900960 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.121114 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.033674 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.078236 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.683405 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.600726 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.027943 | yes |
| DIF_stipe_center | YFB_stipe_center | 0.000613 | yes |
| DIF_stipe_center | YFB_stipe_shell | 0.000613 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.292131 | no |
| DIF_stipe_center | YFB_cap_skin | 0.098276 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.079479 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.156383 | no |
| DIF_stipe_center | YFB_veil | 0.061662 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.779787 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.934515 | no |
| DIF_stipe_center | DIF_cap_skin | 0.021056 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.015242 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.005302 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.001625 | yes |
| DIF_stipe_shell | YFB_stipe_shell | 0.001625 | yes |
| DIF_stipe_shell | YFB_stipe_skin | 0.562138 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.026710 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.021322 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.048212 | yes |
| DIF_stipe_shell | YFB_veil | 0.015529 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.877058 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.004160 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.002084 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.016669 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.001140 | yes |
| DIF_stipe_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.380623 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.061662 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.048007 | yes |
| DIF_stipe_skin | YFB_gill_tissue | 0.106659 | no |
| DIF_stipe_skin | YFB_veil | 0.038047 | yes |
| DIF_stipe_skin | DIF_cap_skin | 0.011350 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.009773 | yes |
| DIF_cap_skin | DIF_gill_tissue | 0.970355 | no |
| DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.000613 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.731280 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.775991 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.615060 | no |
| DIF_cap_skin | YFB_veil | 0.822511 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.950212 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.920423 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.000613 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.654857 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.701274 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.532490 | no |
| DIF_cap_tissue | YFB_veil | 0.751241 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|085580 MTLRFTHYLVIACLLACLTWRSNATTAPNTGGILTVSEADLHKCSAVQKLSALKVAVDEQESPIMRQVFAWLFPF GPAGNSILGTFYISSVPNFILAFIPAQINGNTLNTMTAFAAGGLLSDVLLHLVPHSFMGEHQDPGVHFVMVEEKR NILIGLGLFAGFAAFFVMEKTLRVLSGDDEGGHSHSHSHSLKDECDSAETTAVNNSMSQNGLRSRKGEKVKEDTV QPVKASSGPTATSAYLNLFGDFVHNITDGIAMAASFYASPLVGATTTLACFAHEIPHEIADYSILIRSGFTKKQA MQSQFLTAIGAFVGTFIGIAVHNAASAGGGSMIIDLAAGVRQDATGLLGTTVQLSDLVIPFVAGGFLYIGAVAVL PTLLEESKSAKQAIREFAAMGFGVVCMFLVAWNE* |
| Coding | >AgabiH97|085580 ATGACTCTCCGATTCACTCATTATCTCGTCATCGCCTGTCTTTTGGCTTGCCTAACCTGGCGCTCAAATGCCACC ACCGCACCCAACACAGGTGGTATCCTGACGGTGTCCGAAGCCGATTTACACAAATGCTCTGCCGTGCAAAAGCTT AGTGCTCTCAAGGTTGCGGTGGACGAGCAGGAGTCACCTATTATGCGTCAGGTCTTCGCGTGGTTGTTCCCTTTC GGTCCTGCTGGGAATTCTATCCTCGGCACTTTTTATATAAGCTCGGTACCCAACTTTATACTTGCTTTCATACCC GCGCAAATTAATGGCAATACTCTTAATACCATGACTGCATTTGCTGCTGGAGGCCTGCTTTCAGACGTACTCCTT CACCTCGTGCCACATTCATTCATGGGTGAACATCAAGACCCTGGTGTTCATTTTGTGATGGTTGAAGAGAAAAGA AACATCCTCATCGGACTCGGGCTCTTTGCTGGGTTTGCGGCGTTTTTCGTTATGGAAAAGACACTACGTGTTCTG AGTGGAGACGATGAGGGAGGGCATTCTCATTCTCATTCTCATTCACTCAAGGATGAGTGTGATAGTGCTGAAACG ACTGCTGTGAATAACTCTATGTCACAAAACGGATTGCGGTCGAGGAAAGGCGAGAAGGTAAAGGAAGATACTGTT CAACCCGTTAAAGCCTCTTCCGGACCAACAGCAACCTCAGCTTATCTGAATCTTTTCGGAGATTTTGTGCATAAT ATAACAGATGGTATAGCCATGGCCGCATCTTTCTATGCGTCTCCTCTTGTTGGCGCTACCACGACGTTGGCTTGC TTTGCACATGAAATCCCACATGAAATAGCCGATTACTCGATATTGATTCGCAGTGGGTTTACAAAAAAGCAAGCC ATGCAGTCACAGTTTTTGACAGCGATTGGTGCATTTGTTGGGACATTTATTGGTATTGCGGTGCATAATGCTGCG TCGGCCGGTGGTGGGTCAATGATCATTGACTTGGCCGCGGGGGTGAGGCAAGACGCGACGGGGTTACTCGGCACC ACAGTGCAACTGTCTGATCTGGTCATCCCATTTGTGGCGGGAGGGTTTTTATATATAGGTGCAGTGGCCGTTTTA CCTACGCTACTAGAAGAGAGCAAGAGTGCCAAACAAGCGATCCGAGAGTTCGCCGCGATGGGATTTGGGGTCGTG TGCATGTTTTTGGTCGCGTGGAATGAATAG |
| Transcript | >AgabiH97|085580 ATGACTCTCCGATTCACTCATTATCTCGTCATCGCCTGTCTTTTGGCTTGCCTAACCTGGCGCTCAAATGCCACC ACCGCACCCAACACAGGTGGTATCCTGACGGTGTCCGAAGCCGATTTACACAAATGCTCTGCCGTGCAAAAGCTT AGTGCTCTCAAGGTTGCGGTGGACGAGCAGGAGTCACCTATTATGCGTCAGGTCTTCGCGTGGTTGTTCCCTTTC GGTCCTGCTGGGAATTCTATCCTCGGCACTTTTTATATAAGCTCGGTACCCAACTTTATACTTGCTTTCATACCC GCGCAAATTAATGGCAATACTCTTAATACCATGACTGCATTTGCTGCTGGAGGCCTGCTTTCAGACGTACTCCTT CACCTCGTGCCACATTCATTCATGGGTGAACATCAAGACCCTGGTGTTCATTTTGTGATGGTTGAAGAGAAAAGA AACATCCTCATCGGACTCGGGCTCTTTGCTGGGTTTGCGGCGTTTTTCGTTATGGAAAAGACACTACGTGTTCTG AGTGGAGACGATGAGGGAGGGCATTCTCATTCTCATTCTCATTCACTCAAGGATGAGTGTGATAGTGCTGAAACG ACTGCTGTGAATAACTCTATGTCACAAAACGGATTGCGGTCGAGGAAAGGCGAGAAGGTAAAGGAAGATACTGTT CAACCCGTTAAAGCCTCTTCCGGACCAACAGCAACCTCAGCTTATCTGAATCTTTTCGGAGATTTTGTGCATAAT ATAACAGATGGTATAGCCATGGCCGCATCTTTCTATGCGTCTCCTCTTGTTGGCGCTACCACGACGTTGGCTTGC TTTGCACATGAAATCCCACATGAAATAGCCGATTACTCGATATTGATTCGCAGTGGGTTTACAAAAAAGCAAGCC ATGCAGTCACAGTTTTTGACAGCGATTGGTGCATTTGTTGGGACATTTATTGGTATTGCGGTGCATAATGCTGCG TCGGCCGGTGGTGGGTCAATGATCATTGACTTGGCCGCGGGGGTGAGGCAAGACGCGACGGGGTTACTCGGCACC ACAGTGCAACTGTCTGATCTGGTCATCCCATTTGTGGCGGGAGGGTTTTTATATATAGGTGCAGTGGCCGTTTTA CCTACGCTACTAGAAGAGAGCAAGAGTGCCAAACAAGCGATCCGAGAGTTCGCCGCGATGGGATTTGGGGTCGTG TGCATGTTTTTGGTCGCGTGGAATGAATAG |
| Gene | >AgabiH97|085580 ATGACTCTCCGATTCACTCATTATCTCGTCATCGCCTGTCTTTTGGCTTGCCTAACCTGGCGCTCAAATGCCACC ACCGCACCCAACACAGGTGGTATCCTGACGGTGTCCGTGAGTCATACATTTGGTGGCTCGTGTCGAATGTAAAAC TGTTCTAGATGAACTCAAAAAGACTGATTTGATTACCCCTGGGGGATGTTTAGGAAGCCGATTTACACAAATGCT CTGCCGTGCAAAAGCTTAGTGCTCTCAAGGTTGCGGTGGACGAGCAGGAGTCACCTATTATGCGTCAGGTCTTCG CGTGGTTGTTCCCTTTCGGTCCTGCTGGGAATTCTATCCTCGGCACTTTTTATATAAGCTCGTACGTTCGTTTCG AAAAACCAAATATTTTTTTTTGCTTGCTTCAACTCATGGATTGGAACTCGTGTGATCATTCCAATGATTTAGGGT ACCCAACTTTATACTTGCTTTCATACCCGCGCAAATTAATGGCAATACTCTTAATACCATGACTGCATTTGCTGT AAGTGGGGGTTTTGGTTTTTGGTTGAAGAAATGTTGACGTATGGTTTTTCGAAGGCTGGAGGCCTGCTTTCAGAC GTACTCCTTCACCTCGTGCCACATTCATTCATGGGTGAACATCAAGACCCTGGTGTTCATTTTGTGATGGTTGAA GAGAAAAGAAACATCCTCATCGGGTCCGTCGAATTCCTAAACTCTAAGGAAATCTATTAATTAGTTGACGCAAAT GTGAATTTTTAGACTCGGGCTCTTTGCTGGGTTTGCGGCGTTTTTCGTTATGGAAAAGACACTACGTGTTCTGAG TGGAGACGATGAGGGAGGGCATTCTCATTCTCATTCTCATTCACTCAAGGATGAGTGTGATAGTGCTGAAACGAC TGCTGTGAATAACTCTATGTCACAAAACGGATTGCGGTCGAGGAAAGGCGAGAAGGTAAAGGAAGATACTGTTCA ACCCGTTAAAGCCTCTTCCGGACCAACAGCAACCTCAGCTTATCTGAATCTTTTCGGAGATTTTGTGCATAATAT GTGCGTTAAACGGCCAAAATGCCTCGATGAATTATAGTGCTGATATGAAATTTGTTTTAGAACAGATGGTATAGC GTACGTCATTCCCAAGTTTCAACCCGTCATGATGAAATATAACTCTTTATAGCATGGCCGCATCTTTCTATGCGT CTCCTCTTGTTGGCGCTACCACGACGTTGGCTTGCTTTGCACATGAAATCCCACATGAAATAGCCGATTACTCGA TATTGATTCGCAGTGGGTTTACAAAAAAGCAAGCCATGCAGTCACAGTTTTTGACAGCGATTGGTGCATTTGTGG GTTTCCCCTTTTGACATTGGAAGACTCATTACTTGATCTTATATATTGTATCACAGGTTGGGTAAGTGTTATTCG CTAAAAATAACACGCTCGTTGGTAACTTTTATTGTGTTAGGACATTTATTGGTATTGCGGTGCATAATGCTGCGT CGGCCGGTGGTGGGTCAATGATCATTGACTTGGCCGCGGGGGTGAGGCAAGACGCGACGGGGTTACTCGGCACCA CAGTGCAACTGTCTGATCTGGTACGTCGATCGTCATCCAATAGCTGCATTCCAAAGCCACCGACGGGCAAACGTT CGTGATTGGATCAGAACTCATCCCCATTTCTTGTTTGCAGGTCATCCCATTTGTGGCGGGAGGGTTTTTATATAT AGGTGCAGTGGCCGTTTTACCTACGTATGTGGAATTTAGATCTATTAAAAGTTGTGGTCCCGCCGTGTGATCTTG CCTGATTCTTCGCGAGACGCATTTGTCGATTCACTTGACCTGACTTTTTTGTTTGTAGGCTACTAGAAGAGAGCA AGAGTGCCAAACAAGCGATCCGAGAGGTAAGGGTGGTTTTTTGTGTTACGGGCATCCGGCACTCACACGAGTTGA CAGTTCGCCGCGATGGGATTTGGGGTCGTGTGCATGTTTTTGGTCGCGTGAGTGTTCATTGCGGGTGTACTACGA GGTGCAGTGGCTTAACAATGAGCATTGACAGGTGGAATGAATAG |