Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|084330
Gene name
Locationscaffold_5:1527903..1529542
Strand-
Gene length (bp)1639
Transcript length (bp)1374
Coding sequence length (bp)1374
Protein length (aa) 458

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12928 tRNA_int_end_N2 tRNA-splicing endonuclease subunit sen54 N-term 2.0E-20 79 158

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74908|SEN54_SCHPO Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen54 PE=3 SV=1 48 453 3.0E-37
sp|Q74ZJ5|SEN54_ASHGO tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEN54 PE=3 SV=1 26 452 5.0E-27
sp|Q7SC91|SEN54_NEUCR Probable tRNA-splicing endonuclease subunit tsp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tsp-5 PE=3 SV=2 50 453 2.0E-21
sp|Q02825|SEN54_YEAST tRNA-splicing endonuclease subunit SEN54 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN54 PE=1 SV=1 35 452 2.0E-18
sp|Q8C2A2|SEN54_MOUSE tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus GN=Tsen54 PE=2 SV=2 48 214 4.0E-11
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74908|SEN54_SCHPO Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen54 PE=3 SV=1 48 453 3.0E-37
sp|Q74ZJ5|SEN54_ASHGO tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEN54 PE=3 SV=1 26 452 5.0E-27
sp|Q7SC91|SEN54_NEUCR Probable tRNA-splicing endonuclease subunit tsp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tsp-5 PE=3 SV=2 50 453 2.0E-21
sp|Q02825|SEN54_YEAST tRNA-splicing endonuclease subunit SEN54 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN54 PE=1 SV=1 35 452 2.0E-18
sp|Q8C2A2|SEN54_MOUSE tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus GN=Tsen54 PE=2 SV=2 48 214 4.0E-11
sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54 PE=1 SV=3 48 214 8.0E-10
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 38 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|084330
MDDSLEQPSLIAAKADEVPLEDDDQSSGDEDGALDWTKLIPTVARPVMPKRGEKEFEPRANGGTNLQLHILDRAR
SAMFEALRSVRTISSKGISYGIWYPGLGRTHVTVARGIHFSTMGHSAPRPFVDENGASKTHKRLELLPEEAIYLI
ERGALFCWKECNMDLSSLQGFEGFAGVPMSVQQAYAEMIGRENLTLDKFQVYAYLRRLGYVVTRAEAPNDSYPMP
PPFDLSKPKPKASLLCRIFLPISYILSRARRVFARSFSWWKPLCLSRWLHHDNASIYRSLRFMSAGHDNTLNRPV
PTTLVASYSPYRIFFNVYKPSTPFKKTAPPLPDFQVVVVNARTTPMPTLHELSALFDLLPELPPPLPRPRRQAYG
TKSAAPAPAITASSPGSPSTFLQRVFPFFFSPPKQSQEFRRRPNPFAALKQGKKIIVIAAVDNGNISFFRFSQGA
FAEWPMA*
Coding >AgabiH97|084330
ATGGATGACTCCCTCGAACAACCCAGTTTGATCGCTGCCAAGGCCGACGAGGTACCGTTGGAGGACGATGACCAG
TCGTCGGGTGACGAAGATGGCGCTCTGGACTGGACCAAGCTAATTCCCACTGTAGCTCGCCCTGTTATGCCCAAG
CGGGGAGAAAAAGAGTTTGAACCCAGAGCAAATGGAGGCACCAACCTTCAACTCCATATCTTGGATCGAGCACGG
TCAGCCATGTTCGAAGCGTTGCGTTCAGTCCGGACGATTTCAAGTAAGGGCATTAGCTACGGTATCTGGTATCCA
GGACTTGGCAGAACTCATGTCACCGTGGCTCGTGGCATACACTTCTCTACTATGGGCCACTCTGCTCCTCGGCCA
TTCGTTGACGAAAATGGGGCAAGCAAAACTCATAAAAGACTGGAACTGCTCCCTGAAGAGGCTATTTATTTGATA
GAGAGAGGTGCCCTCTTTTGTTGGAAAGAATGCAATATGGATCTTTCCTCGCTACAGGGCTTCGAGGGTTTTGCC
GGCGTTCCAATGAGTGTTCAGCAAGCGTACGCAGAGATGATAGGAAGGGAAAATCTAACATTAGACAAATTTCAG
GTCTATGCGTACCTTCGTAGGCTTGGATATGTTGTAACTCGAGCTGAAGCACCAAATGACTCGTACCCAATGCCC
CCTCCTTTTGACCTCTCCAAACCCAAACCGAAGGCTTCATTACTTTGCCGAATATTTTTACCCATATCTTATATC
CTTTCAAGAGCACGTCGTGTTTTTGCTCGCAGCTTCAGCTGGTGGAAACCTCTCTGCTTAAGTAGATGGTTACAT
CACGATAATGCTTCAATATATCGCTCACTCCGCTTCATGTCCGCCGGCCACGACAACACCTTGAACAGACCAGTC
CCTACCACATTAGTAGCGTCGTATTCACCCTACAGAATATTTTTCAATGTCTACAAACCATCGACACCATTCAAG
AAAACGGCACCTCCCTTGCCTGATTTTCAAGTCGTGGTCGTAAATGCTCGAACGACACCTATGCCAACCCTACAC
GAGCTCTCTGCACTATTTGATCTCCTTCCCGAACTCCCACCACCCCTACCGCGGCCGAGGCGACAAGCTTACGGT
ACAAAATCTGCAGCGCCCGCTCCTGCAATTACTGCATCCTCGCCTGGGTCCCCATCAACTTTTCTCCAGAGAGTC
TTTCCCTTTTTCTTTTCCCCCCCAAAACAATCGCAAGAGTTCCGACGCAGACCAAATCCATTTGCAGCACTTAAA
CAAGGCAAAAAGATCATCGTCATCGCCGCAGTAGATAATGGTAATATCAGTTTCTTCCGGTTCAGTCAGGGTGCA
TTTGCAGAGTGGCCTATGGCTTAG
Transcript >AgabiH97|084330
ATGGATGACTCCCTCGAACAACCCAGTTTGATCGCTGCCAAGGCCGACGAGGTACCGTTGGAGGACGATGACCAG
TCGTCGGGTGACGAAGATGGCGCTCTGGACTGGACCAAGCTAATTCCCACTGTAGCTCGCCCTGTTATGCCCAAG
CGGGGAGAAAAAGAGTTTGAACCCAGAGCAAATGGAGGCACCAACCTTCAACTCCATATCTTGGATCGAGCACGG
TCAGCCATGTTCGAAGCGTTGCGTTCAGTCCGGACGATTTCAAGTAAGGGCATTAGCTACGGTATCTGGTATCCA
GGACTTGGCAGAACTCATGTCACCGTGGCTCGTGGCATACACTTCTCTACTATGGGCCACTCTGCTCCTCGGCCA
TTCGTTGACGAAAATGGGGCAAGCAAAACTCATAAAAGACTGGAACTGCTCCCTGAAGAGGCTATTTATTTGATA
GAGAGAGGTGCCCTCTTTTGTTGGAAAGAATGCAATATGGATCTTTCCTCGCTACAGGGCTTCGAGGGTTTTGCC
GGCGTTCCAATGAGTGTTCAGCAAGCGTACGCAGAGATGATAGGAAGGGAAAATCTAACATTAGACAAATTTCAG
GTCTATGCGTACCTTCGTAGGCTTGGATATGTTGTAACTCGAGCTGAAGCACCAAATGACTCGTACCCAATGCCC
CCTCCTTTTGACCTCTCCAAACCCAAACCGAAGGCTTCATTACTTTGCCGAATATTTTTACCCATATCTTATATC
CTTTCAAGAGCACGTCGTGTTTTTGCTCGCAGCTTCAGCTGGTGGAAACCTCTCTGCTTAAGTAGATGGTTACAT
CACGATAATGCTTCAATATATCGCTCACTCCGCTTCATGTCCGCCGGCCACGACAACACCTTGAACAGACCAGTC
CCTACCACATTAGTAGCGTCGTATTCACCCTACAGAATATTTTTCAATGTCTACAAACCATCGACACCATTCAAG
AAAACGGCACCTCCCTTGCCTGATTTTCAAGTCGTGGTCGTAAATGCTCGAACGACACCTATGCCAACCCTACAC
GAGCTCTCTGCACTATTTGATCTCCTTCCCGAACTCCCACCACCCCTACCGCGGCCGAGGCGACAAGCTTACGGT
ACAAAATCTGCAGCGCCCGCTCCTGCAATTACTGCATCCTCGCCTGGGTCCCCATCAACTTTTCTCCAGAGAGTC
TTTCCCTTTTTCTTTTCCCCCCCAAAACAATCGCAAGAGTTCCGACGCAGACCAAATCCATTTGCAGCACTTAAA
CAAGGCAAAAAGATCATCGTCATCGCCGCAGTAGATAATGGTAATATCAGTTTCTTCCGGTTCAGTCAGGGTGCA
TTTGCAGAGTGGCCTATGGCTTAG
Gene >AgabiH97|084330
ATGGATGACTCCCTCGAACAACCCAGTTTGATCGCTGCCAAGGCCGACGAGGTACCGTTGGAGGACGATGACCAG
TCGTCGGGTGACGAAGATGGCGCTCTGGACTGGACCAAGCTAATGTAACCGCGACATCTACAGTCTCCTTCCTCA
GTTGTCATTGAATCATCAATGTTAGTCCCACTGTAGCTCGCCCTGTTATGCCCAAGCGGGGAGAAAAAGAGTTTG
AACCCAGAGCAAATGGAGGCACCAACCTTCAACTCCATATCTTGGATCGAGCACGGTCAGCCATGTTCGAAGCGT
TGCGTTCAGTCCGGACGATTTCAAGGCAAAGTTTTCATCTTTTTCGCATCATTCTGACATTCTGACATTCGCTTC
TAGTAAGGGCATTAGCTACGGTATCTGGTATCCAGGACTTGGCAGAACTCATGTCACCGTGGCTCGTGGCATACA
CTTCTCTACTATGGGCCACTCTGCTCCTCGGCCATTCGTTGACGAAAATGGGGCAAGCAAAACTCATAAAAGACT
GGAACTGCTCCCTGAAGAGGCTATTTATTTGATAGAGAGAGGTGCCCTCTTTTGTTGGAAAGAATGCAATATGGA
TCTTTCCTCGCTACAGGGCTTCGAGGGTTTTGCCGGCGTTCCAATGAGTGTTCAGCAAGCGTACGCAGAGATGAT
AGGAAGGGAAAATCTAACATTAGACAAATTTCAGGTCCGATTGACTTATGCTTCTTTTGTTATTCACTCACGCCT
TGGATAGGTCTATGCGTACCTTCGTAGGCTTGGATATGTTGTAACTCGAGCTGAAGCACCAAATGACTCGTACCC
AATGCCCCCTCCTTTTGACCTCTCCAAACCCAAACCGAAGGCTTCATTACTTTGCCGAATATTTTTACCCATATC
TTATATCCTTTCAAGAGCACGTCGTGTTTTTGCTCGCAGCTTCAGCTGGTGGAAACCTCTCTGCTTAAGTAGATG
GTTACATCACGATAATGGTGTGTTCAATTTCGTTCTCAATTTGAAATCATCTTATAATTCATTTCAGCTTCAATA
TATCGCTCACTCCGCTTCATGTCCGCCGGCCACGACAACACCTTGAACAGACCAGTCCCTACCACATTAGTAGCG
TCGTATTCACCCTACAGAATATTTTTCAATGTCTACAAACCATCGACACCATTCAAGAAAACGGCACCTCCCTTG
CCTGATTTTCAAGTCGTGGTCGTAAAGTAAGACTTGAGCTCACCTGTTTTTATTGTGATCTCAGGTATAATGTGA
CTCATCTAGTGCTCGAACGACACCTATGCCAACCCTACACGAGCTCTCTGCACTATTTGATCTCCTTCCCGAACT
CCCACCACCCCTACCGCGGCCGAGGCGACAAGCTTACGGTACAAAATCTGCAGCGCCCGCTCCTGCAATTACTGC
ATCCTCGCCTGGGTCCCCATCAACTTTTCTCCAGAGAGTCTTTCCCTTTTTCTTTTCCCCCCCAAAACAATCGCA
AGAGTTCCGACGCAGACCAAATCCATTTGCAGCACTTAAACAAGGCAAAAAGATCATCGTCATCGCCGCAGTAGA
TAATGGTAATATCAGTTTCTTCCGGTTCAGTCAGGGTGCATTTGCAGAGTGGCCTATGGCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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