© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|083920 |
| Gene name | |
| Location | scaffold_5:1428627..1429917 |
| Strand | - |
| Gene length (bp) | 1290 |
| Transcript length (bp) | 1020 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13460 | NAD_binding_10 | NAD(P)H-binding | 5.0E-09 | 10 | 95 |
| PF05368 | NmrA | NmrA-like family | 3.4E-07 | 9 | 87 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7K4|YGI2_SCHPO | Uncharacterized protein C2A9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.02 PE=3 SV=1 | 5 | 321 | 2.0E-15 |
| sp|Q12177|YL056_YEAST | Uncharacterized protein YLL056C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL056C PE=2 SV=1 | 5 | 319 | 2.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 35.30 | 19.18 | 51.42 |
| Initials | Initials knots | 36.64 | 20.66 | 52.62 |
| Pileal_Stipeal_center | Stage I stipe center | 2.48 | 0.81 | 4.16 |
| Pileal_Stipeal_shell | Stage I stipe shell | 4.72 | 1.96 | 7.49 |
| DIF_stipe_center | Stage II stipe center | 3.11 | 1.20 | 5.02 |
| DIF_stipe_shell | Stage II stipe shell | 1.92 | 0.59 | 3.24 |
| DIF_stipe_skin | Stage II stipe skin | 2.68 | 0.99 | 4.36 |
| DIF_cap_skin | Stage II cap skin | 6.79 | 2.95 | 10.64 |
| DIF_cap_tissue | Stage II cap tissue | 3.58 | 1.32 | 5.83 |
| DIF_gill_tissue | Stage II gill tissue | 1.88 | 0.56 | 3.19 |
| YFB_stipe_center | Young fruiting body stipe center | 9.39 | 4.24 | 14.54 |
| YFB_stipe_shell | Young fruiting body stipe shell | 7.07 | 3.24 | 10.90 |
| YFB_stipe_skin | Young fruiting body stipe skin | 2.42 | 0.88 | 3.95 |
| YFB_cap_skin | Young fruiting body cap skin | 36.15 | 20.38 | 51.92 |
| YFB_cap_tissue | Young fruiting body cap tissue | 2.90 | 0.93 | 4.88 |
| YFB_gill_tissue | Young fruiting body gill tissue | 19.34 | 8.95 | 29.74 |
| YFB_veil | Young fruiting body veil | 3.43 | 1.28 | 5.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.968853 | no |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.104271 | no |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.951715 | no |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.000613 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.003365 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.723698 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.000613 | yes |
| DIF_gill_tissue | YFB_cap_tissue | 0.466177 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_veil | 0.256965 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.590192 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.000613 | yes |
| YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.002951 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.069387 | no |
| YFB_stipe_center | YFB_veil | 0.014956 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.003765 | yes |
| YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.029408 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.004928 | yes |
| YFB_stipe_shell | YFB_veil | 0.092503 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.796795 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_skin | YFB_veil | 0.542210 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.000613 | yes |
| YFB_cap_skin | YFB_gill_tissue | 0.081406 | no |
| YFB_cap_skin | YFB_veil | 0.000613 | yes |
| YFB_cap_tissue | YFB_gill_tissue | 0.000613 | yes |
| YFB_cap_tissue | YFB_veil | 0.823820 | no |
| YFB_gill_tissue | YFB_veil | 0.000613 | yes |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.000613 | yes |
| Initials | YFB_cap_skin | 0.981565 | no |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.072862 | no |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.000613 | yes |
| Initials | DIF_stipe_skin | 0.000613 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.703300 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.002951 | yes |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.017783 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.976992 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.846828 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_veil | 0.618321 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.179578 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.748459 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.718968 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.934603 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.024946 | yes |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.561775 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.047584 | yes |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.088269 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.391794 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.125578 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.321898 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_veil | 0.579041 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.399688 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.036455 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.216412 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.470028 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.649677 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.350076 | no |
| DIF_stipe_center | YFB_stipe_center | 0.003765 | yes |
| DIF_stipe_center | YFB_stipe_shell | 0.035537 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.688658 | no |
| DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.933161 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_center | YFB_veil | 0.900900 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.351576 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.834057 | no |
| DIF_stipe_center | DIF_cap_skin | 0.055779 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.854241 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.981339 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.000613 | yes |
| DIF_stipe_shell | YFB_stipe_shell | 0.004160 | yes |
| DIF_stipe_shell | YFB_stipe_skin | 0.744105 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.475436 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_shell | YFB_veil | 0.254213 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.590411 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.005302 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.217972 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.571374 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.002951 | yes |
| DIF_stipe_skin | YFB_stipe_shell | 0.013186 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.900741 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_skin | YFB_cap_tissue | 0.922759 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_skin | YFB_veil | 0.703088 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.021322 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.643877 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.005671 | yes |
| DIF_cap_skin | YFB_stipe_center | 0.527881 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.959714 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.007782 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.000613 | yes |
| DIF_cap_skin | YFB_cap_tissue | 0.042475 | yes |
| DIF_cap_skin | YFB_gill_tissue | 0.005302 | yes |
| DIF_cap_skin | YFB_veil | 0.124703 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.159459 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.217207 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.020260 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.114888 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.485484 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.000613 | yes |
| DIF_cap_tissue | YFB_cap_tissue | 0.767826 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.000613 | yes |
| DIF_cap_tissue | YFB_veil | 0.963953 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|083920 MAKTKVFTTGSTGYIGGSILERLLVHPNAHSFEITTLVRSQNKADKLKKLGVTPVVGSFSDTSLLEDLAAGADAV FDAADADDLEAAKAILRGLRRRHRATGIPSIFIHTSGTGLLSDNAAGLYATDKIWDDADADDLETLPDSAPHRDV DLAIINADNEGYVRTYLVAPSTIYGLATGRLVKAEIANNHSQQVPRLIRTALDRRRAGMVGKGVNIWPNVHIDDI GDLYIALFDAAIADPRTRHGREGYYFGENGEHTLYEVGKHIGRVLVELGKSDIAEPTTFTPKEIDKYFAGSTSLG SNSRCRGNRSRMIGWQPKKTTKDLFASIRPEVDDILRRG* |
| Coding | >AgabiH97|083920 ATGGCCAAAACAAAGGTTTTCACGACCGGATCCACCGGCTACATCGGAGGATCTATCCTTGAGCGCCTTCTAGTA CATCCTAATGCACATTCTTTCGAGATCACAACTCTCGTCCGATCGCAAAACAAAGCGGACAAGTTGAAGAAACTG GGCGTGACGCCTGTCGTCGGCTCATTTAGTGATACTTCGCTACTAGAAGACCTCGCAGCTGGGGCAGATGCAGTG TTCGATGCGGCGGATGCGGATGACTTGGAAGCCGCAAAGGCGATATTGCGGGGACTCAGGAGACGTCACCGAGCT ACCGGGATTCCTTCTATCTTCATTCATACTTCAGGAACAGGTCTTTTATCGGACAATGCTGCAGGTCTCTACGCA ACCGACAAAATATGGGATGACGCAGATGCAGATGACCTCGAAACACTGCCTGACAGCGCGCCTCATCGCGATGTC GATCTGGCTATAATCAATGCTGACAATGAAGGCTACGTTAGAACATATCTCGTAGCCCCATCAACGATTTACGGC CTGGCGACGGGAAGACTGGTCAAAGCCGAGATAGCCAACAATCACTCACAGCAAGTCCCAAGGTTGATTCGCACG GCACTCGACAGGCGAAGGGCAGGTATGGTCGGAAAAGGCGTCAACATATGGCCAAACGTGCATATCGATGATATC GGTGACCTTTACATTGCCCTGTTCGATGCTGCCATCGCAGATCCACGCACACGTCATGGTCGTGAGGGTTATTAT TTTGGCGAGAATGGAGAACATACGTTGTACGAGGTTGGGAAGCACATTGGGCGTGTTCTTGTCGAACTCGGCAAA AGTGACATTGCAGAGCCAACGACATTCACTCCAAAAGAAATCGACAAGTACTTTGCGGGATCAACATCATTAGGT TCCAACTCGAGGTGCAGGGGAAACAGGTCAAGGATGATAGGTTGGCAACCCAAGAAAACCACGAAAGATCTCTTT GCGAGTATCAGGCCGGAAGTCGATGATATTTTGAGACGAGGATAG |
| Transcript | >AgabiH97|083920 ATGGCCAAAACAAAGGTTTTCACGACCGGATCCACCGGCTACATCGGAGGATCTATCCTTGAGCGCCTTCTAGTA CATCCTAATGCACATTCTTTCGAGATCACAACTCTCGTCCGATCGCAAAACAAAGCGGACAAGTTGAAGAAACTG GGCGTGACGCCTGTCGTCGGCTCATTTAGTGATACTTCGCTACTAGAAGACCTCGCAGCTGGGGCAGATGCAGTG TTCGATGCGGCGGATGCGGATGACTTGGAAGCCGCAAAGGCGATATTGCGGGGACTCAGGAGACGTCACCGAGCT ACCGGGATTCCTTCTATCTTCATTCATACTTCAGGAACAGGTCTTTTATCGGACAATGCTGCAGGTCTCTACGCA ACCGACAAAATATGGGATGACGCAGATGCAGATGACCTCGAAACACTGCCTGACAGCGCGCCTCATCGCGATGTC GATCTGGCTATAATCAATGCTGACAATGAAGGCTACGTTAGAACATATCTCGTAGCCCCATCAACGATTTACGGC CTGGCGACGGGAAGACTGGTCAAAGCCGAGATAGCCAACAATCACTCACAGCAAGTCCCAAGGTTGATTCGCACG GCACTCGACAGGCGAAGGGCAGGTATGGTCGGAAAAGGCGTCAACATATGGCCAAACGTGCATATCGATGATATC GGTGACCTTTACATTGCCCTGTTCGATGCTGCCATCGCAGATCCACGCACACGTCATGGTCGTGAGGGTTATTAT TTTGGCGAGAATGGAGAACATACGTTGTACGAGGTTGGGAAGCACATTGGGCGTGTTCTTGTCGAACTCGGCAAA AGTGACATTGCAGAGCCAACGACATTCACTCCAAAAGAAATCGACAAGTACTTTGCGGGATCAACATCATTAGGT TCCAACTCGAGGTGCAGGGGAAACAGGTCAAGGATGATAGGTTGGCAACCCAAGAAAACCACGAAAGATCTCTTT GCGAGTATCAGGCCGGAAGTCGATGATATTTTGAGACGAGGATAG |
| Gene | >AgabiH97|083920 ATGGCCAAAACAAAGGTTTTCACGACCGGATCCACCGGTTAGATCTGTTTGATTCATTCTACGTTCAATGGGGTC AATCTCATTTTGATTGATAGGCTACATCGGAGGATCTATCCTTGAGCGCCTTCTAGTACATCCTAATGCACATTC TTTCGAGATCACAACTCTCGTCCGATCGCAAAACAAAGCGGACAAGTTGAAGAAACTGGGCGTGACGCCTGTCGT CGGCTCATTTAGTGATACTTCGCTACTAGAAGACCTCGCAGCTGGGGCAGATGCAGTGTTCGATGCGGTAGGTTG GTTGGATCTTTGCAAAGATTGATGGCCCTCATAGACGCATATGAAGGCGGATGCGGATGACTTGGAAGCCGCAAA GGCGATATTGCGGGGACTCAGGAGACGTCACCGAGCTACCGGGATTCCTTCTATCTTCATTCATACTGTATGTAT GCCGCCCGCTTTTCAAGTTCATCGATGCACCAGTGTCGAATTTTTTTAGTCAGGAACAGGTCTTTTATCGGACAA TGCTGCAGGTCTCTACGCAACCGACAAAATATGGGATGACGCAGATGCAGATGACCTCGAAACACTGCCTGACAG CGCGCCTCATCGCGATGTCGATCTGGCTATAATCAATGCTGACAATGAAGGCTACGTTAGAACATATCTCGTAGC CCCATCAACGATTTACGGCCTGGCGACGGGAAGACTGGTCAAAGCCGAGATAGCCAACAATCACTCACAGCAAGT CCCAAGGTTGATTCGCACGGCACTCGACAGGCGAAGGGCAGGTATGGTCGGAAAAGGCGTCAACATATGGCCAAA CGTGCATATCGATGATAGTGAGTTGTTCCTTGACAAATGTGCTCAGCAGCTTCAGTGACCTGTTTAGTCGGTGAC CTTTACATTGCCCTGTTCGATGCTGCCATCGCAGATCCACGCACACGTCATGGTCGTGAGGGTTATTATTTTGGC GAGAATGGAGAACATACGTTGTACGAGGTTGGGAAGCACATTGGGCGTGTTCTTGTCGAACTCGGCAAAAGTGAC ATTGCAGAGCCAACGACATTCACTCCAAAAGAAATCGACAAGTACTTTGCGGTGCGTTGTATCTGCCTTACTGTT TTATGATTCGACAATATCACTCCCCAGGGATCAACATCATTAGGTTCCAACTCGAGGTGCAGGGGAAACAGGTCA AGGATGATAGGTTGGCAACCCAAGAAAACCACGAAAGATCTCTTTGCGAGTATCAGGCCGGAAGTCGATGATATT TTGAGACGAGGATAG |