Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|083770
Gene name
Locationscaffold_5:1385093..1386309
Strand+
Gene length (bp)1216
Transcript length (bp)993
Coding sequence length (bp)993
Protein length (aa) 331

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00096 zf-C2H2 Zinc finger, C2H2 type 1.5E-04 29 47
PF12874 zf-met Zinc-finger of C2H2 type 1.6E-03 28 46

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q07120|GFI1_RAT Zinc finger protein Gfi-1 OS=Rattus norvegicus GN=Gfi1 PE=1 SV=1 29 100 6.0E-07
sp|Q5DWN0|GFI1_CANLF Zinc finger protein Gfi-1 OS=Canis lupus familiaris GN=GFI1 PE=2 SV=1 29 100 7.0E-07
sp|P70338|GFI1_MOUSE Zinc finger protein Gfi-1 OS=Mus musculus GN=Gfi1 PE=1 SV=2 29 100 8.0E-07
sp|Q99684|GFI1_HUMAN Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2 29 100 8.0E-07
sp|O42409|GFI1B_CHICK Zinc finger protein Gfi-1b OS=Gallus gallus GN=GFI1B PE=2 SV=1 29 100 1.0E-06
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Swissprot ID Swissprot Description Start End E-value
sp|Q07120|GFI1_RAT Zinc finger protein Gfi-1 OS=Rattus norvegicus GN=Gfi1 PE=1 SV=1 29 100 6.0E-07
sp|Q5DWN0|GFI1_CANLF Zinc finger protein Gfi-1 OS=Canis lupus familiaris GN=GFI1 PE=2 SV=1 29 100 7.0E-07
sp|P70338|GFI1_MOUSE Zinc finger protein Gfi-1 OS=Mus musculus GN=Gfi1 PE=1 SV=2 29 100 8.0E-07
sp|Q99684|GFI1_HUMAN Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2 29 100 8.0E-07
sp|O42409|GFI1B_CHICK Zinc finger protein Gfi-1b OS=Gallus gallus GN=GFI1B PE=2 SV=1 29 100 1.0E-06
sp|Q9N658|GFI1_DROME Zinc finger protein sens OS=Drosophila melanogaster GN=sens PE=1 SV=1 29 117 3.0E-06
sp|O70237|GFI1B_MOUSE Zinc finger protein Gfi-1b OS=Mus musculus GN=Gfi1b PE=1 SV=1 29 100 4.0E-06
sp|P23607|ZFA_MOUSE Zinc finger autosomal protein OS=Mus musculus GN=Zfa PE=3 SV=1 29 123 4.0E-06
sp|Q5VTD9|GFI1B_HUMAN Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1 29 100 4.0E-06
sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AZF1 PE=1 SV=1 29 115 4.0E-06
sp|Q93560|BLMP1_CAEEL B lymphocyte-induced maturation protein 1 homolog OS=Caenorhabditis elegans GN=blmp-1 PE=1 SV=1 29 114 6.0E-06
sp|Q6DCW1|GFI1B_XENLA Zinc finger protein Gfi-1b OS=Xenopus laevis GN=gfi1b PE=2 SV=1 29 100 7.0E-06
sp|P53968|CRZ1_YEAST Transcriptional regulator CRZ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRZ1 PE=1 SV=1 29 146 8.0E-06
sp|Q95LI3|ZFY_BOVIN Zinc finger Y-chromosomal protein OS=Bos taurus GN=ZFY PE=2 SV=1 29 123 9.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
C2H2 zinc finger

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|083770
MPRDMPELSAKRNRRLQSSSMGLKDSRYCDVCNKEFSRPSELKRHLSNTLVHNPSARKYPCQYCGSLHTQKSNLR
IHERIHLNELKEICSLPFNETNSTLCDFKCSDPSSMARHVYKVHASPFYDLSRDRLILPPWLSHAMEKRAGTKDG
LVQPASPRTPSLSSSPRSSTKSNLCTPSPLPEEESPAGQVKTSYFQNNFVPKTTVDDAGGSLPPVHSTLPFVQQP
IPHHAAISNAPDFTFDYHQYSAVPALPLPVHHTERHLASTSRALLQSTSGIPHIVATQDYNADFSIPYITSYRNG
FDDRNVTQDINYFDFDRLESFNQFNVNYLM*
Coding >AgabiH97|083770
ATGCCTCGTGACATGCCTGAGCTATCTGCGAAGCGCAACCGCCGCTTACAGTCCAGCTCGATGGGCCTCAAGGAT
AGCAGGTACTGTGACGTCTGCAACAAAGAGTTTTCTCGTCCTTCAGAGCTCAAGCGGCACCTCTCCAACACTTTG
GTCCACAATCCAAGCGCGAGAAAGTATCCATGTCAGTACTGTGGGTCCCTACATACACAAAAATCAAACCTCAGG
ATTCATGAGCGCATTCATCTTAATGAACTAAAAGAAATATGCAGCCTCCCTTTCAACGAGACAAACTCCACGCTG
TGCGATTTCAAGTGTAGTGACCCGTCCTCGATGGCGCGACATGTCTACAAAGTCCACGCGTCGCCATTTTATGAC
CTCAGCCGCGATCGATTAATACTGCCTCCATGGCTCTCACATGCCATGGAAAAAAGAGCTGGAACGAAAGATGGT
CTTGTTCAACCTGCTTCGCCTCGCACACCATCTCTATCATCTTCGCCTCGTTCTTCTACGAAATCAAATTTATGT
ACCCCCTCGCCGCTCCCCGAGGAGGAATCACCAGCGGGTCAAGTTAAGACGAGTTATTTCCAAAATAACTTTGTG
CCAAAAACAACTGTTGACGACGCCGGCGGCAGTCTACCACCCGTTCACTCAACTCTCCCCTTTGTGCAGCAACCA
ATCCCTCATCATGCTGCAATATCCAATGCACCGGACTTCACCTTCGACTACCATCAATATTCAGCGGTGCCGGCG
CTACCTCTTCCAGTCCACCATACTGAGCGACACTTGGCATCGACTTCTCGCGCTCTTTTACAGTCAACCAGTGGA
ATACCTCATATCGTTGCCACCCAAGATTACAACGCGGATTTCTCAATACCATATATAACTTCATACCGGAATGGA
TTCGACGATCGAAATGTCACTCAAGATATTAATTATTTTGACTTTGACAGACTAGAGTCGTTCAACCAATTCAAT
GTTAATTATTTGATGTAA
Transcript >AgabiH97|083770
ATGCCTCGTGACATGCCTGAGCTATCTGCGAAGCGCAACCGCCGCTTACAGTCCAGCTCGATGGGCCTCAAGGAT
AGCAGGTACTGTGACGTCTGCAACAAAGAGTTTTCTCGTCCTTCAGAGCTCAAGCGGCACCTCTCCAACACTTTG
GTCCACAATCCAAGCGCGAGAAAGTATCCATGTCAGTACTGTGGGTCCCTACATACACAAAAATCAAACCTCAGG
ATTCATGAGCGCATTCATCTTAATGAACTAAAAGAAATATGCAGCCTCCCTTTCAACGAGACAAACTCCACGCTG
TGCGATTTCAAGTGTAGTGACCCGTCCTCGATGGCGCGACATGTCTACAAAGTCCACGCGTCGCCATTTTATGAC
CTCAGCCGCGATCGATTAATACTGCCTCCATGGCTCTCACATGCCATGGAAAAAAGAGCTGGAACGAAAGATGGT
CTTGTTCAACCTGCTTCGCCTCGCACACCATCTCTATCATCTTCGCCTCGTTCTTCTACGAAATCAAATTTATGT
ACCCCCTCGCCGCTCCCCGAGGAGGAATCACCAGCGGGTCAAGTTAAGACGAGTTATTTCCAAAATAACTTTGTG
CCAAAAACAACTGTTGACGACGCCGGCGGCAGTCTACCACCCGTTCACTCAACTCTCCCCTTTGTGCAGCAACCA
ATCCCTCATCATGCTGCAATATCCAATGCACCGGACTTCACCTTCGACTACCATCAATATTCAGCGGTGCCGGCG
CTACCTCTTCCAGTCCACCATACTGAGCGACACTTGGCATCGACTTCTCGCGCTCTTTTACAGTCAACCAGTGGA
ATACCTCATATCGTTGCCACCCAAGATTACAACGCGGATTTCTCAATACCATATATAACTTCATACCGGAATGGA
TTCGACGATCGAAATGTCACTCAAGATATTAATTATTTTGACTTTGACAGACTAGAGTCGTTCAACCAATTCAAT
GTTAATTATTTGATGTAA
Gene >AgabiH97|083770
ATGCCTCGTGACATGCCTGAGCTATCTGCGAAGCGCAACCGCCGCTTACAGTCCAGCTCGATGGTATGGGAAAAT
GTCGCCACCCGTGTTGAACGTTCACCAACGACGCTTAGGGCCTCAAGGATAGCAGGTACTGTGACGTCTGCAACA
AAGAGTTTTCTCGTCCTTCAGAGCTCAAGCGGCACCTCTCCAACACTTTGGTCCACAATCCAAGCGCGAGGTAAT
CTTTATTACGTTACTCGACGGCTTCTGTGGTTGACCACTCTTCTTATTCTTAGAAAGTATCCATGTCAGTACTGT
GGGTCCCTACATACACAAAAATCAAACCTCAGGATTCATGAGCGCATTCAGTCAGTTTGTTCTCTGTGTCTCGAA
GCGCGCGCCACTCACATCCACCAACAGTCTTAATGAACTAAAAGAAATATGCAGCCTCCCTTTCAACGAGACAAA
CTCCACGCTGTGCGATTTCAAGTGTAGTGACCCGTCCTCGATGGCGCGACATGTCTACAAAGTCCACGCGTCGCC
ATTTTATGACCTCAGCCGCGATCGATTAATACTGCCTCCATGGCTCTCACATGCCATGGAAAAAAGAGCTGGAAC
GAAAGATGGTCTTGTTCAACCTGCTTCGCCTCGCACACCATCTCTATCATCTTCGCCTCGTTCTTCTACGAAATC
AAATTTATGTACCCCCTCGCCGCTCCCCGAGGAGGAATCACCAGCGGGTCAAGTTAAGGTGAGTCAAACTACCCC
ATATAGAGATAAGTAGATCCTGAGATTCTTTTTTCGTCTTTCGTAGACGAGTTATTTCCAAAATAACTTTGTGCC
AAAAACAACTGTTGACGACGCCGGCGGCAGTCTACCACCCGTTCACTCAACTCTCCCCTTTGTGCAGCAACCAAT
CCCTCATCATGCTGCAATATCCAATGCACCGGACTTCACCTTCGACTACCATCAATATTCAGCGGTGCCGGCGCT
ACCTCTTCCAGTCCACCATACTGAGCGACACTTGGCATCGACTTCTCGCGCTCTTTTACAGTCAACCAGTGGAAT
ACCTCATATCGTTGCCACCCAAGATTACAACGCGGATTTCTCAATACCATATATAACTTCATACCGGAATGGATT
CGACGATCGAAATGTCACTCAAGATATTAATTATTTTGACTTTGACAGACTAGAGTCGTTCAACCAATTCAATGT
TAATTATTTGATGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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