Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|083660
Gene name
Locationscaffold_5:1365679..1366908
Strand+
Gene length (bp)1229
Transcript length (bp)783
Coding sequence length (bp)783
Protein length (aa) 261

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|C5M501|IR222_CANTT Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 52 227 3.0E-12
sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 5 230 3.0E-10
sp|C4R0M5|IRC22_PICPG Increased recombination centers protein 22 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=IRC22 PE=3 SV=1 44 182 2.0E-08
sp|C5M580|IR221_CANTT Increased recombination centers protein 22-1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-1 PE=3 SV=1 52 227 4.0E-08
sp|Q6BW93|IRC22_DEBHA Increased recombination centers protein 22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IRC22 PE=3 SV=1 50 229 1.0E-07
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Swissprot ID Swissprot Description Start End E-value
sp|C5M501|IR222_CANTT Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 52 227 3.0E-12
sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 5 230 3.0E-10
sp|C4R0M5|IRC22_PICPG Increased recombination centers protein 22 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=IRC22 PE=3 SV=1 44 182 2.0E-08
sp|C5M580|IR221_CANTT Increased recombination centers protein 22-1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-1 PE=3 SV=1 52 227 4.0E-08
sp|Q6BW93|IRC22_DEBHA Increased recombination centers protein 22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IRC22 PE=3 SV=1 50 229 1.0E-07
sp|A3LU17|IRC22_PICST Increased recombination centers protein 22 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=IRC22 PE=3 SV=1 1 232 1.0E-07
sp|Q59XW9|IR222_CANAL Increased recombination centers protein 22-2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-2 PE=3 SV=1 5 230 3.0E-07
sp|C4YKP5|IR221_CANAW Increased recombination centers protein 22-1 OS=Candida albicans (strain WO-1) GN=IRC22-1 PE=3 SV=1 5 230 4.0E-07
sp|P0CH79|IR222_CANAW Increased recombination centers protein 22-2 OS=Candida albicans (strain WO-1) GN=IRC22-2 PE=3 SV=1 5 230 4.0E-07
sp|Q59YF4|IR221_CANAL Increased recombination centers protein 22-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1 5 230 4.0E-07
sp|A5DYV2|IRC22_LODEL Increased recombination centers protein 22 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=IRC22 PE=3 SV=1 46 230 5.0E-07
sp|C5DJ31|IRC22_LACTC Increased recombination centers protein 22 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=IRC22 PE=3 SV=1 48 224 1.0E-06
sp|A5DEU9|IRC22_PICGU Increased recombination centers protein 22 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=IRC22 PE=3 SV=1 50 230 6.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

Domain # Start End Length
1 161 183 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 148.41 82.85 213.97
Initials Initials knots 87.51 51.34 123.68
Pileal_Stipeal_center Stage I stipe center 209.84 124.28 295.40
Pileal_Stipeal_shell Stage I stipe shell 383.04 217.75 548.33
DIF_stipe_center Stage II stipe center 230.04 136.87 323.21
DIF_stipe_shell Stage II stipe shell 133.94 79.69 188.20
DIF_stipe_skin Stage II stipe skin 169.23 99.52 238.94
DIF_cap_skin Stage II cap skin 449.20 257.46 640.95
DIF_cap_tissue Stage II cap tissue 429.87 248.30 611.44
DIF_gill_tissue Stage II gill tissue 437.56 252.56 622.57
YFB_stipe_center Young fruiting body stipe center 109.27 64.39 154.15
YFB_stipe_shell Young fruiting body stipe shell 86.46 50.15 122.78
YFB_stipe_skin Young fruiting body stipe skin 133.37 77.63 189.10
YFB_cap_skin Young fruiting body cap skin 391.50 226.96 556.04
YFB_cap_tissue Young fruiting body cap tissue 321.82 189.04 454.60
YFB_gill_tissue Young fruiting body gill tissue 353.24 207.26 499.22
YFB_veil Young fruiting body veil 372.84 215.46 530.22

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.373341 no
Casing YFB_stipe_shell 0.062995 no
Casing YFB_stipe_skin 0.830723 no
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.005302 yes
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.000613 yes
Casing Initials 0.069952 no
Casing Pileal_Stipeal_center 0.286806 no
Casing Pileal_Stipeal_shell 0.000613 yes
Casing DIF_stipe_center 0.151786 no
Casing DIF_stipe_shell 0.836814 no
Casing DIF_stipe_skin 0.781617 no
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.000613 yes
DIF_gill_tissue YFB_stipe_shell 0.000613 yes
DIF_gill_tissue YFB_stipe_skin 0.000613 yes
DIF_gill_tissue YFB_cap_skin 0.816317 no
DIF_gill_tissue YFB_cap_tissue 0.353184 no
DIF_gill_tissue YFB_gill_tissue 0.575388 no
DIF_gill_tissue YFB_veil 0.705059 no
YFB_stipe_center YFB_stipe_shell 0.518975 no
YFB_stipe_center YFB_stipe_skin 0.600007 no
YFB_stipe_center YFB_cap_skin 0.000613 yes
YFB_stipe_center YFB_cap_tissue 0.000613 yes
YFB_stipe_center YFB_gill_tissue 0.000613 yes
YFB_stipe_center YFB_veil 0.000613 yes
YFB_stipe_shell YFB_stipe_skin 0.139707 no
YFB_stipe_shell YFB_cap_skin 0.000613 yes
YFB_stipe_shell YFB_cap_tissue 0.000613 yes
YFB_stipe_shell YFB_gill_tissue 0.000613 yes
YFB_stipe_shell YFB_veil 0.000613 yes
YFB_stipe_skin YFB_cap_skin 0.000613 yes
YFB_stipe_skin YFB_cap_tissue 0.000613 yes
YFB_stipe_skin YFB_gill_tissue 0.000613 yes
YFB_stipe_skin YFB_veil 0.000613 yes
YFB_cap_skin YFB_cap_tissue 0.620391 no
YFB_cap_skin YFB_gill_tissue 0.832369 no
YFB_cap_skin YFB_veil 0.928069 no
YFB_cap_tissue YFB_gill_tissue 0.846542 no
YFB_cap_tissue YFB_veil 0.732490 no
YFB_gill_tissue YFB_veil 0.919571 no
Initials DIF_gill_tissue 0.000613 yes
Initials YFB_stipe_center 0.545643 no
Initials YFB_stipe_shell 0.983724 no
Initials YFB_stipe_skin 0.157706 no
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.000613 yes
Initials YFB_gill_tissue 0.000613 yes
Initials YFB_veil 0.000613 yes
Initials Pileal_Stipeal_center 0.000613 yes
Initials Pileal_Stipeal_shell 0.000613 yes
Initials DIF_stipe_center 0.000613 yes
Initials DIF_stipe_shell 0.149487 no
Initials DIF_stipe_skin 0.014668 yes
Initials DIF_cap_skin 0.000613 yes
Initials DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_center DIF_gill_tissue 0.004160 yes
Pileal_Stipeal_center YFB_stipe_center 0.009123 yes
Pileal_Stipeal_center YFB_stipe_shell 0.000613 yes
Pileal_Stipeal_center YFB_stipe_skin 0.105537 no
Pileal_Stipeal_center YFB_cap_skin 0.021322 yes
Pileal_Stipeal_center YFB_cap_tissue 0.138282 no
Pileal_Stipeal_center YFB_gill_tissue 0.056760 no
Pileal_Stipeal_center YFB_veil 0.033211 yes
Pileal_Stipeal_center Pileal_Stipeal_shell 0.028193 yes
Pileal_Stipeal_center DIF_stipe_center 0.847800 no
Pileal_Stipeal_center DIF_stipe_shell 0.104748 no
Pileal_Stipeal_center DIF_stipe_skin 0.558044 no
Pileal_Stipeal_center DIF_cap_skin 0.004928 yes
Pileal_Stipeal_center DIF_cap_tissue 0.007439 yes
Pileal_Stipeal_shell DIF_gill_tissue 0.773385 no
Pileal_Stipeal_shell YFB_stipe_center 0.000613 yes
Pileal_Stipeal_shell YFB_stipe_shell 0.000613 yes
Pileal_Stipeal_shell YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_shell YFB_cap_skin 0.970184 no
Pileal_Stipeal_shell YFB_cap_tissue 0.678936 no
Pileal_Stipeal_shell YFB_gill_tissue 0.874234 no
Pileal_Stipeal_shell YFB_veil 0.961017 no
Pileal_Stipeal_shell DIF_stipe_center 0.075556 no
Pileal_Stipeal_shell DIF_stipe_shell 0.000613 yes
Pileal_Stipeal_shell DIF_stipe_skin 0.001140 yes
Pileal_Stipeal_shell DIF_cap_skin 0.714774 no
Pileal_Stipeal_shell DIF_cap_tissue 0.809280 no
DIF_stipe_center DIF_gill_tissue 0.014956 yes
DIF_stipe_center YFB_stipe_center 0.000613 yes
DIF_stipe_center YFB_stipe_shell 0.000613 yes
DIF_stipe_center YFB_stipe_skin 0.044418 yes
DIF_stipe_center YFB_cap_skin 0.054575 no
DIF_stipe_center YFB_cap_tissue 0.286806 no
DIF_stipe_center YFB_gill_tissue 0.137864 no
DIF_stipe_center YFB_veil 0.091835 no
DIF_stipe_center DIF_stipe_shell 0.046327 yes
DIF_stipe_center DIF_stipe_skin 0.354472 no
DIF_stipe_center DIF_cap_skin 0.011041 yes
DIF_stipe_center DIF_cap_tissue 0.021056 yes
DIF_stipe_shell DIF_gill_tissue 0.000613 yes
DIF_stipe_shell YFB_stipe_center 0.584664 no
DIF_stipe_shell YFB_stipe_shell 0.132420 no
DIF_stipe_shell YFB_stipe_skin 0.992936 no
DIF_stipe_shell YFB_cap_skin 0.000613 yes
DIF_stipe_shell YFB_cap_tissue 0.000613 yes
DIF_stipe_shell YFB_gill_tissue 0.000613 yes
DIF_stipe_shell YFB_veil 0.000613 yes
DIF_stipe_shell DIF_stipe_skin 0.518034 no
DIF_stipe_shell DIF_cap_skin 0.000613 yes
DIF_stipe_shell DIF_cap_tissue 0.000613 yes
DIF_stipe_skin DIF_gill_tissue 0.000613 yes
DIF_stipe_skin YFB_stipe_center 0.133853 no
DIF_stipe_skin YFB_stipe_shell 0.010093 yes
DIF_stipe_skin YFB_stipe_skin 0.509109 no
DIF_stipe_skin YFB_cap_skin 0.002525 yes
DIF_stipe_skin YFB_cap_tissue 0.017507 yes
DIF_stipe_skin YFB_gill_tissue 0.002951 yes
DIF_stipe_skin YFB_veil 0.001140 yes
DIF_stipe_skin DIF_cap_skin 0.000613 yes
DIF_stipe_skin DIF_cap_tissue 0.000613 yes
DIF_cap_skin DIF_gill_tissue 0.962538 no
DIF_cap_skin YFB_stipe_center 0.000613 yes
DIF_cap_skin YFB_stipe_shell 0.000613 yes
DIF_cap_skin YFB_stipe_skin 0.000613 yes
DIF_cap_skin YFB_cap_skin 0.761673 no
DIF_cap_skin YFB_cap_tissue 0.302791 no
DIF_cap_skin YFB_gill_tissue 0.508897 no
DIF_cap_skin YFB_veil 0.642169 no
DIF_cap_skin DIF_cap_tissue 0.935464 no
DIF_cap_tissue DIF_gill_tissue 0.975945 no
DIF_cap_tissue YFB_stipe_center 0.000613 yes
DIF_cap_tissue YFB_stipe_shell 0.000613 yes
DIF_cap_tissue YFB_stipe_skin 0.000613 yes
DIF_cap_tissue YFB_cap_skin 0.853036 no
DIF_cap_tissue YFB_cap_tissue 0.388792 no
DIF_cap_tissue YFB_gill_tissue 0.619399 no
DIF_cap_tissue YFB_veil 0.745713 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|083660
MRFARLSSTILSLAILATSVAAVEVIQNVEITEPEVVATAAFAESNPFHQIVNGEKNTLTLSVENKSDRNVTLVA
IAGSLHHPDTDVLIKNLTSLNYNMPLIENFNINLPYMFYSEFKPGEARLNVWLEHAVEDQKYRVQVYDSIVTIVE
PEISWLDWKMWSTYLVVAGLLGGLSYFAYMTFVPQPKKRSKKAAPVVSAPVGTVTATGSGGYQEEWIPEHHLRKG
KKTKQTGGVTSGTSADEMSGADASGTEGKKRKGRK*
Coding >AgabiH97|083660
ATGCGTTTCGCCCGTCTATCTTCAACAATCCTCTCCTTAGCTATTCTCGCAACCTCCGTTGCTGCCGTTGAAGTC
ATACAAAATGTCGAAATCACCGAACCCGAAGTAGTCGCAACAGCAGCTTTTGCGGAGTCTAACCCTTTCCACCAA
ATCGTCAACGGAGAGAAAAACACCCTGACTCTATCAGTGGAGAACAAGTCGGACCGGAATGTAACACTGGTTGCC
ATTGCTGGATCCCTACACCACCCGGATACAGATGTGCTCATAAAAAACTTGACATCACTCAATTATAATATGCCT
CTAATTGAAAACTTCAACATCAACCTTCCCTACATGTTCTATAGCGAATTCAAGCCAGGTGAAGCCCGTTTGAAC
GTGTGGTTAGAACACGCTGTCGAGGACCAAAAATATCGCGTTCAGGTATATGATTCTATCGTGACTATTGTCGAA
CCGGAAATTTCTTGGCTGGATTGGAAGATGTGGTCGACTTATTTGGTTGTCGCGGGTCTGCTCGGTGGTCTTTCA
TATTTCGCCTACATGACCTTTGTCCCGCAACCCAAGAAGCGTAGCAAAAAAGCAGCACCAGTTGTCAGCGCTCCT
GTCGGCACGGTCACCGCTACCGGTTCTGGTGGCTATCAAGAGGAATGGATCCCTGAACACCACCTCCGCAAAGGC
AAGAAGACCAAACAGACTGGTGGTGTTACTTCCGGAACTAGCGCAGATGAAATGAGTGGTGCTGATGCAAGTGGT
ACCGAGGGTAAGAAGAGGAAGGGGCGCAAGTGA
Transcript >AgabiH97|083660
ATGCGTTTCGCCCGTCTATCTTCAACAATCCTCTCCTTAGCTATTCTCGCAACCTCCGTTGCTGCCGTTGAAGTC
ATACAAAATGTCGAAATCACCGAACCCGAAGTAGTCGCAACAGCAGCTTTTGCGGAGTCTAACCCTTTCCACCAA
ATCGTCAACGGAGAGAAAAACACCCTGACTCTATCAGTGGAGAACAAGTCGGACCGGAATGTAACACTGGTTGCC
ATTGCTGGATCCCTACACCACCCGGATACAGATGTGCTCATAAAAAACTTGACATCACTCAATTATAATATGCCT
CTAATTGAAAACTTCAACATCAACCTTCCCTACATGTTCTATAGCGAATTCAAGCCAGGTGAAGCCCGTTTGAAC
GTGTGGTTAGAACACGCTGTCGAGGACCAAAAATATCGCGTTCAGGTATATGATTCTATCGTGACTATTGTCGAA
CCGGAAATTTCTTGGCTGGATTGGAAGATGTGGTCGACTTATTTGGTTGTCGCGGGTCTGCTCGGTGGTCTTTCA
TATTTCGCCTACATGACCTTTGTCCCGCAACCCAAGAAGCGTAGCAAAAAAGCAGCACCAGTTGTCAGCGCTCCT
GTCGGCACGGTCACCGCTACCGGTTCTGGTGGCTATCAAGAGGAATGGATCCCTGAACACCACCTCCGCAAAGGC
AAGAAGACCAAACAGACTGGTGGTGTTACTTCCGGAACTAGCGCAGATGAAATGAGTGGTGCTGATGCAAGTGGT
ACCGAGGGTAAGAAGAGGAAGGGGCGCAAGTGA
Gene >AgabiH97|083660
ATGCGTTTCGCCCGTCTATCTTCAACAATCCTCTCCTTAGCTATTCTCGCAACCTCCGTTGCTGCCGGTAGGGTT
TAATGTGCTCAGAATTTTGCCTTCTTAGTCACTCATTGGTCATCCATCTAGTTGAAGTCATACAAAATGTCGAAA
TCACCGAACCCGAAGTAGTCGCAACAGCAGCTTTTGCGGAGTCTAACCCTTTCCACCGTGCGTTTTTTGTATCCA
GTCATAACTGTGTTACACAGTCTCGCTAACTTTTATTTCCTGACTCGTCGGTCCATCTCCGACGCGTATAGAAAT
CGTCAACGGAGAGAAAAACACCCTGACTCTATCAGTGGAGAACAAGTCGGACCGGAATGTAACACTGGTTGCCAT
TGCTGGATCCCTACACCACCCGGATACAGATGTGCTCATAAAAAACGTGGGTACTTTCTTTCAACGTCGGTGTAT
GTTGTTGAATGGCTAATTGGGTATTGTTACCAGTTGACATCACTCAATTATAATATGCCTCTAATTGAAAACTTC
AACATCAACCTTCCCTACATGTTCTATAGCGAGTGAGCAATCCCCGAGGACATAGTTCATCACTGCATACCGATA
CTGACCATCTTGATTTTAAAGATTCAAGGTATCTCATTTCATTAAGTTTGTCTCGTGAAACAGTGATTTGATCCA
GGAATATCCGATCAGCCAGGTGAAGCCCGTTTGAACGTGTGGTTAGAACACGCTGTCGAGGTTTGATGACCGTAT
CTCAAACTTATGGTTATGCGCTTACAGTTCCGAAACTTAGGACCAAAAATATCGCGTTCAGGTATATGATTCTAT
CGTGACTATTGTCGAACCGGAAATTTCTTGGCTGGATTGGAAGATGTATGGTTTATCCAACGTATATTTCGACAT
TGGCCCTAATTAGATGTCATTCTAGGTGGTCGACTTATTTGGTTGTCGCGGGTCTGCTCGGTGGTCTTTCATATT
TCGCCTACATGACCTTTGTCCCGCAACCCAAGAAGCGTAGCAAAAAAGCAGCACCAGTTGTCAGCGCTCCTGTCG
GCACGGTCACCGCTACCGGTTCTGGTGGCTATCAAGAGGAATGGATCCCTGAACACCACCTCCGCAAAGGCAAGA
AGACCAAACAGACTGGTGGTGTTACTTCCGGAACTAGCGCAGATGAAATGAGTGGTGCTGATGCAAGTGGTACCG
AGGGTAAGAAGAGGAAGGGGCGCAAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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