Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|083660
Gene name
Locationscaffold_5:1365679..1366908
Strand+
Gene length (bp)1229
Transcript length (bp)783
Coding sequence length (bp)783
Protein length (aa) 261

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PFAM Domains

(None)

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|C5M501|IR222_CANTT Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 52 227 3.0E-12
sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 5 230 3.0E-10
sp|C4R0M5|IRC22_PICPG Increased recombination centers protein 22 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=IRC22 PE=3 SV=1 44 182 2.0E-08
sp|C5M580|IR221_CANTT Increased recombination centers protein 22-1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-1 PE=3 SV=1 52 227 4.0E-08
sp|Q6BW93|IRC22_DEBHA Increased recombination centers protein 22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IRC22 PE=3 SV=1 50 229 1.0E-07
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Swissprot ID Swissprot Description Start End E-value
sp|C5M501|IR222_CANTT Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 52 227 3.0E-12
sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 5 230 3.0E-10
sp|C4R0M5|IRC22_PICPG Increased recombination centers protein 22 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=IRC22 PE=3 SV=1 44 182 2.0E-08
sp|C5M580|IR221_CANTT Increased recombination centers protein 22-1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-1 PE=3 SV=1 52 227 4.0E-08
sp|Q6BW93|IRC22_DEBHA Increased recombination centers protein 22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IRC22 PE=3 SV=1 50 229 1.0E-07
sp|A3LU17|IRC22_PICST Increased recombination centers protein 22 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=IRC22 PE=3 SV=1 1 232 1.0E-07
sp|Q59XW9|IR222_CANAL Increased recombination centers protein 22-2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-2 PE=3 SV=1 5 230 3.0E-07
sp|C4YKP5|IR221_CANAW Increased recombination centers protein 22-1 OS=Candida albicans (strain WO-1) GN=IRC22-1 PE=3 SV=1 5 230 4.0E-07
sp|P0CH79|IR222_CANAW Increased recombination centers protein 22-2 OS=Candida albicans (strain WO-1) GN=IRC22-2 PE=3 SV=1 5 230 4.0E-07
sp|Q59YF4|IR221_CANAL Increased recombination centers protein 22-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1 5 230 4.0E-07
sp|A5DYV2|IRC22_LODEL Increased recombination centers protein 22 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=IRC22 PE=3 SV=1 46 230 5.0E-07
sp|C5DJ31|IRC22_LACTC Increased recombination centers protein 22 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=IRC22 PE=3 SV=1 48 224 1.0E-06
sp|A5DEU9|IRC22_PICGU Increased recombination centers protein 22 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=IRC22 PE=3 SV=1 50 230 6.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

Domain # Start End Length
1 161 183 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|083660
MRFARLSSTILSLAILATSVAAVEVIQNVEITEPEVVATAAFAESNPFHQIVNGEKNTLTLSVENKSDRNVTLVA
IAGSLHHPDTDVLIKNLTSLNYNMPLIENFNINLPYMFYSEFKPGEARLNVWLEHAVEDQKYRVQVYDSIVTIVE
PEISWLDWKMWSTYLVVAGLLGGLSYFAYMTFVPQPKKRSKKAAPVVSAPVGTVTATGSGGYQEEWIPEHHLRKG
KKTKQTGGVTSGTSADEMSGADASGTEGKKRKGRK*
Coding >AgabiH97|083660
ATGCGTTTCGCCCGTCTATCTTCAACAATCCTCTCCTTAGCTATTCTCGCAACCTCCGTTGCTGCCGTTGAAGTC
ATACAAAATGTCGAAATCACCGAACCCGAAGTAGTCGCAACAGCAGCTTTTGCGGAGTCTAACCCTTTCCACCAA
ATCGTCAACGGAGAGAAAAACACCCTGACTCTATCAGTGGAGAACAAGTCGGACCGGAATGTAACACTGGTTGCC
ATTGCTGGATCCCTACACCACCCGGATACAGATGTGCTCATAAAAAACTTGACATCACTCAATTATAATATGCCT
CTAATTGAAAACTTCAACATCAACCTTCCCTACATGTTCTATAGCGAATTCAAGCCAGGTGAAGCCCGTTTGAAC
GTGTGGTTAGAACACGCTGTCGAGGACCAAAAATATCGCGTTCAGGTATATGATTCTATCGTGACTATTGTCGAA
CCGGAAATTTCTTGGCTGGATTGGAAGATGTGGTCGACTTATTTGGTTGTCGCGGGTCTGCTCGGTGGTCTTTCA
TATTTCGCCTACATGACCTTTGTCCCGCAACCCAAGAAGCGTAGCAAAAAAGCAGCACCAGTTGTCAGCGCTCCT
GTCGGCACGGTCACCGCTACCGGTTCTGGTGGCTATCAAGAGGAATGGATCCCTGAACACCACCTCCGCAAAGGC
AAGAAGACCAAACAGACTGGTGGTGTTACTTCCGGAACTAGCGCAGATGAAATGAGTGGTGCTGATGCAAGTGGT
ACCGAGGGTAAGAAGAGGAAGGGGCGCAAGTGA
Transcript >AgabiH97|083660
ATGCGTTTCGCCCGTCTATCTTCAACAATCCTCTCCTTAGCTATTCTCGCAACCTCCGTTGCTGCCGTTGAAGTC
ATACAAAATGTCGAAATCACCGAACCCGAAGTAGTCGCAACAGCAGCTTTTGCGGAGTCTAACCCTTTCCACCAA
ATCGTCAACGGAGAGAAAAACACCCTGACTCTATCAGTGGAGAACAAGTCGGACCGGAATGTAACACTGGTTGCC
ATTGCTGGATCCCTACACCACCCGGATACAGATGTGCTCATAAAAAACTTGACATCACTCAATTATAATATGCCT
CTAATTGAAAACTTCAACATCAACCTTCCCTACATGTTCTATAGCGAATTCAAGCCAGGTGAAGCCCGTTTGAAC
GTGTGGTTAGAACACGCTGTCGAGGACCAAAAATATCGCGTTCAGGTATATGATTCTATCGTGACTATTGTCGAA
CCGGAAATTTCTTGGCTGGATTGGAAGATGTGGTCGACTTATTTGGTTGTCGCGGGTCTGCTCGGTGGTCTTTCA
TATTTCGCCTACATGACCTTTGTCCCGCAACCCAAGAAGCGTAGCAAAAAAGCAGCACCAGTTGTCAGCGCTCCT
GTCGGCACGGTCACCGCTACCGGTTCTGGTGGCTATCAAGAGGAATGGATCCCTGAACACCACCTCCGCAAAGGC
AAGAAGACCAAACAGACTGGTGGTGTTACTTCCGGAACTAGCGCAGATGAAATGAGTGGTGCTGATGCAAGTGGT
ACCGAGGGTAAGAAGAGGAAGGGGCGCAAGTGA
Gene >AgabiH97|083660
ATGCGTTTCGCCCGTCTATCTTCAACAATCCTCTCCTTAGCTATTCTCGCAACCTCCGTTGCTGCCGGTAGGGTT
TAATGTGCTCAGAATTTTGCCTTCTTAGTCACTCATTGGTCATCCATCTAGTTGAAGTCATACAAAATGTCGAAA
TCACCGAACCCGAAGTAGTCGCAACAGCAGCTTTTGCGGAGTCTAACCCTTTCCACCGTGCGTTTTTTGTATCCA
GTCATAACTGTGTTACACAGTCTCGCTAACTTTTATTTCCTGACTCGTCGGTCCATCTCCGACGCGTATAGAAAT
CGTCAACGGAGAGAAAAACACCCTGACTCTATCAGTGGAGAACAAGTCGGACCGGAATGTAACACTGGTTGCCAT
TGCTGGATCCCTACACCACCCGGATACAGATGTGCTCATAAAAAACGTGGGTACTTTCTTTCAACGTCGGTGTAT
GTTGTTGAATGGCTAATTGGGTATTGTTACCAGTTGACATCACTCAATTATAATATGCCTCTAATTGAAAACTTC
AACATCAACCTTCCCTACATGTTCTATAGCGAGTGAGCAATCCCCGAGGACATAGTTCATCACTGCATACCGATA
CTGACCATCTTGATTTTAAAGATTCAAGGTATCTCATTTCATTAAGTTTGTCTCGTGAAACAGTGATTTGATCCA
GGAATATCCGATCAGCCAGGTGAAGCCCGTTTGAACGTGTGGTTAGAACACGCTGTCGAGGTTTGATGACCGTAT
CTCAAACTTATGGTTATGCGCTTACAGTTCCGAAACTTAGGACCAAAAATATCGCGTTCAGGTATATGATTCTAT
CGTGACTATTGTCGAACCGGAAATTTCTTGGCTGGATTGGAAGATGTATGGTTTATCCAACGTATATTTCGACAT
TGGCCCTAATTAGATGTCATTCTAGGTGGTCGACTTATTTGGTTGTCGCGGGTCTGCTCGGTGGTCTTTCATATT
TCGCCTACATGACCTTTGTCCCGCAACCCAAGAAGCGTAGCAAAAAAGCAGCACCAGTTGTCAGCGCTCCTGTCG
GCACGGTCACCGCTACCGGTTCTGGTGGCTATCAAGAGGAATGGATCCCTGAACACCACCTCCGCAAAGGCAAGA
AGACCAAACAGACTGGTGGTGTTACTTCCGGAACTAGCGCAGATGAAATGAGTGGTGCTGATGCAAGTGGTACCG
AGGGTAAGAAGAGGAAGGGGCGCAAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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