© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|083540 |
| Gene name | |
| Location | scaffold_5:1330744..1332559 |
| Strand | - |
| Gene length (bp) | 1815 |
| Transcript length (bp) | 1479 |
| Coding sequence length (bp) | 1479 |
| Protein length (aa) | 493 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16275 | SF1-HH | Splicing factor 1 helix-hairpin domain | 9.2E-39 | 79 | 186 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.3E-04 | 317 | 333 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.2E-05 | 342 | 357 |
| PF00013 | KH_1 | KH domain | 5.1E-05 | 209 | 279 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CO45|BBP_CRYNB | Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1 | 58 | 470 | 5.0E-174 |
| sp|P0CO44|BBP_CRYNJ | Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=BBP PE=3 SV=1 | 58 | 470 | 5.0E-174 |
| sp|Q4P0H7|BBP_USTMA | Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC 9021) GN=BBP PE=3 SV=1 | 46 | 429 | 1.0E-155 |
| sp|Q8NIW7|BBP_NEUCR | Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bbp-1 PE=3 SV=1 | 2 | 422 | 5.0E-137 |
| sp|Q4WXV6|BBP_ASPFU | Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3 SV=1 | 2 | 356 | 1.0E-134 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CO45|BBP_CRYNB | Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1 | 58 | 470 | 5.0E-174 |
| sp|P0CO44|BBP_CRYNJ | Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=BBP PE=3 SV=1 | 58 | 470 | 5.0E-174 |
| sp|Q4P0H7|BBP_USTMA | Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC 9021) GN=BBP PE=3 SV=1 | 46 | 429 | 1.0E-155 |
| sp|Q8NIW7|BBP_NEUCR | Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bbp-1 PE=3 SV=1 | 2 | 422 | 5.0E-137 |
| sp|Q4WXV6|BBP_ASPFU | Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3 SV=1 | 2 | 356 | 1.0E-134 |
| sp|O74555|BBP_SCHPO | Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bpb1 PE=1 SV=1 | 10 | 435 | 1.0E-119 |
| sp|Q6C187|BBP_YARLI | Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BBP PE=3 SV=1 | 10 | 391 | 5.0E-102 |
| sp|Q12186|BBP_YEAST | Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1 | 70 | 356 | 7.0E-87 |
| sp|Q15637|SF01_HUMAN | Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4 | 71 | 390 | 4.0E-78 |
| sp|Q64213|SF01_MOUSE | Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6 | 77 | 405 | 1.0E-77 |
| sp|Q750X2|BBP_ASHGO | Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2 | 100 | 357 | 2.0E-77 |
| sp|Q6FW77|BBP_CANGA | Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP PE=3 SV=1 | 93 | 357 | 4.0E-77 |
| sp|Q5AED9|BBP_CANAL | Branchpoint-bridging protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BBP PE=3 SV=1 | 65 | 368 | 2.0E-64 |
| sp|Q6BSP4|BBP_DEBHA | Branchpoint-bridging protein OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=BBP PE=3 SV=2 | 96 | 356 | 3.0E-58 |
| sp|Q54BM5|BBP_DICDI | Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1 | 45 | 390 | 5.0E-57 |
| sp|Q32NN2|QKIA_XENLA | Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2 | 132 | 312 | 3.0E-20 |
| sp|Q91XU1|QKI_RAT | Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2 | 132 | 312 | 8.0E-20 |
| sp|Q5W9D5|QKI_PIG | Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1 | 132 | 312 | 8.0E-20 |
| sp|Q9QYS9|QKI_MOUSE | Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1 | 132 | 312 | 8.0E-20 |
| sp|Q96PU8|QKI_HUMAN | Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1 | 132 | 312 | 8.0E-20 |
| sp|Q5W9D6|QKI_HORSE | Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1 | 132 | 312 | 8.0E-20 |
| sp|Q7JJZ8|QKI_FELCA | Protein quaking OS=Felis catus GN=QKI PE=2 SV=1 | 132 | 312 | 8.0E-20 |
| sp|Q9GMY1|QKI_CANLF | Protein quaking OS=Canis lupus familiaris GN=QKI PE=2 SV=1 | 132 | 312 | 8.0E-20 |
| sp|Q5W9D7|QKI_BOVIN | Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1 | 132 | 312 | 8.0E-20 |
| sp|Q6P104|QKIB_DANRE | Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1 | 132 | 312 | 1.0E-19 |
| sp|Q9YH18|QKI_CHICK | Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2 | 157 | 312 | 2.0E-19 |
| sp|Q6IRN2|QKIB_XENLA | Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1 | 196 | 312 | 3.0E-19 |
| sp|O01367|HOW_DROME | Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1 | 195 | 340 | 2.0E-18 |
| sp|Q17339|GLD1_CAEEL | Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1 | 195 | 311 | 2.0E-18 |
| sp|Q6P0D0|QKIA_DANRE | Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2 | 145 | 312 | 5.0E-18 |
| sp|Q75GR5|SPIN1_ORYSJ | KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica GN=SPIN1 PE=1 SV=1 | 197 | 313 | 6.0E-18 |
| sp|Q9FKT4|QKIL2_ARATH | KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1 | 197 | 313 | 2.0E-17 |
| sp|Q8GYR4|QKIL4_ARATH | KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1 | 197 | 313 | 4.0E-17 |
| sp|Q0WLR1|QKIL1_ARATH | KH domain-containing protein At4g26480 OS=Arabidopsis thaliana GN=At4g26480 PE=2 SV=1 | 197 | 313 | 1.0E-16 |
| sp|Q5VWX1|KHDR2_HUMAN | KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1 | 195 | 309 | 2.0E-16 |
| sp|Q9ZVI3|QKIL3_ARATH | KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1 | 197 | 313 | 3.0E-16 |
| sp|Q920F3|KHDR2_RAT | KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 | 195 | 309 | 3.0E-16 |
| sp|Q0VFL3|KHDR2_XENTR | KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1 | 195 | 309 | 6.0E-16 |
| sp|Q9WU01|KHDR2_MOUSE | KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1 | 195 | 309 | 7.0E-16 |
| sp|Q08BJ2|KHDR2_DANRE | KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1 | 195 | 309 | 2.0E-15 |
| sp|Q8GWR3|QKIL5_ARATH | KH domain-containing protein At1g09660/At1g09670 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1 | 197 | 313 | 3.0E-15 |
| sp|Q9R226|KHDR3_MOUSE | KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1 | 190 | 308 | 5.0E-14 |
| sp|O75525|KHDR3_HUMAN | KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1 | 190 | 308 | 5.0E-14 |
| sp|Q9JLP1|KHDR3_RAT | KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1 | 190 | 308 | 7.0E-14 |
| sp|Q8UUW7|KHDR1_CHICK | KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1 | 190 | 309 | 4.0E-11 |
| sp|Q07666|KHDR1_HUMAN | KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1 | 190 | 309 | 5.0E-11 |
| sp|Q91V33|KHDR1_RAT | KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1 | 190 | 309 | 6.0E-11 |
| sp|Q60749|KHDR1_MOUSE | KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2 | 190 | 309 | 6.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, CCHC-type |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 159.36 | 92.97 | 225.76 |
| Initials | Initials knots | 157.57 | 92.26 | 222.88 |
| Pileal_Stipeal_center | Stage I stipe center | 180.94 | 104.37 | 257.51 |
| Pileal_Stipeal_shell | Stage I stipe shell | 198.94 | 113.02 | 284.86 |
| DIF_stipe_center | Stage II stipe center | 188.60 | 109.10 | 268.09 |
| DIF_stipe_shell | Stage II stipe shell | 195.45 | 112.74 | 278.16 |
| DIF_stipe_skin | Stage II stipe skin | 191.26 | 110.24 | 272.28 |
| DIF_cap_skin | Stage II cap skin | 213.16 | 121.84 | 304.47 |
| DIF_cap_tissue | Stage II cap tissue | 207.26 | 118.20 | 296.32 |
| DIF_gill_tissue | Stage II gill tissue | 216.66 | 123.70 | 309.61 |
| YFB_stipe_center | Young fruiting body stipe center | 180.76 | 104.71 | 256.80 |
| YFB_stipe_shell | Young fruiting body stipe shell | 175.86 | 102.24 | 249.49 |
| YFB_stipe_skin | Young fruiting body stipe skin | 174.76 | 101.62 | 247.89 |
| YFB_cap_skin | Young fruiting body cap skin | 184.43 | 106.86 | 261.99 |
| YFB_cap_tissue | Young fruiting body cap tissue | 191.75 | 110.71 | 272.80 |
| YFB_gill_tissue | Young fruiting body gill tissue | 193.78 | 111.77 | 275.79 |
| YFB_veil | Young fruiting body veil | 207.21 | 118.51 | 295.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.359520 | no |
| Casing | YFB_stipe_center | 0.778909 | no |
| Casing | YFB_stipe_shell | 0.837114 | no |
| Casing | YFB_stipe_skin | 0.852043 | no |
| Casing | YFB_cap_skin | 0.734836 | no |
| Casing | YFB_cap_tissue | 0.640267 | no |
| Casing | YFB_gill_tissue | 0.618681 | no |
| Casing | YFB_veil | 0.467805 | no |
| Casing | Initials | 0.984051 | no |
| Casing | Pileal_Stipeal_center | 0.776366 | no |
| Casing | Pileal_Stipeal_shell | 0.559782 | no |
| Casing | DIF_stipe_center | 0.684595 | no |
| Casing | DIF_stipe_shell | 0.596601 | no |
| Casing | DIF_stipe_skin | 0.648127 | no |
| Casing | DIF_cap_skin | 0.398064 | no |
| Casing | DIF_cap_tissue | 0.465634 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.661576 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.597669 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.586921 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.709147 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.791235 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.816519 | no |
| DIF_gill_tissue | YFB_veil | 0.937929 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.961376 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.953342 | no |
| YFB_stipe_center | YFB_cap_skin | 0.971466 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.911853 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.894320 | no |
| YFB_stipe_center | YFB_veil | 0.766704 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.990559 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.931183 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.862390 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.842728 | no |
| YFB_stipe_shell | YFB_veil | 0.704018 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.921831 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.851627 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.831120 | no |
| YFB_stipe_skin | YFB_veil | 0.691568 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.943852 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.928060 | no |
| YFB_cap_skin | YFB_veil | 0.807861 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.985477 | no |
| YFB_cap_tissue | YFB_veil | 0.883406 | no |
| YFB_gill_tissue | YFB_veil | 0.901305 | no |
| Initials | DIF_gill_tissue | 0.336225 | no |
| Initials | YFB_stipe_center | 0.759435 | no |
| Initials | YFB_stipe_shell | 0.818926 | no |
| Initials | YFB_stipe_skin | 0.833046 | no |
| Initials | YFB_cap_skin | 0.713676 | no |
| Initials | YFB_cap_tissue | 0.614376 | no |
| Initials | YFB_gill_tissue | 0.592620 | no |
| Initials | YFB_veil | 0.442400 | no |
| Initials | Pileal_Stipeal_center | 0.755749 | no |
| Initials | Pileal_Stipeal_shell | 0.533516 | no |
| Initials | DIF_stipe_center | 0.660782 | no |
| Initials | DIF_stipe_shell | 0.570149 | no |
| Initials | DIF_stipe_skin | 0.622063 | no |
| Initials | DIF_cap_skin | 0.377918 | no |
| Initials | DIF_cap_tissue | 0.440393 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.667019 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.998347 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.960113 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.951918 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.972958 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.913556 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.895275 | no |
| Pileal_Stipeal_center | YFB_veil | 0.771737 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.852072 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.942026 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.880284 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.919068 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.705609 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.770401 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.871844 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.850283 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.795871 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.783612 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.885046 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.949013 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.963634 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.945139 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.924955 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.976671 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.946288 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.901014 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.944320 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.758280 | no |
| DIF_stipe_center | YFB_stipe_center | 0.937534 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.892377 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.883329 | no |
| DIF_stipe_center | YFB_cap_skin | 0.968963 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.976976 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.961870 | no |
| DIF_stipe_center | YFB_veil | 0.851477 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.948564 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.980463 | no |
| DIF_stipe_center | DIF_cap_skin | 0.793495 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.849743 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.832660 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.878794 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.824726 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.812196 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.912124 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.972375 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.987476 | no |
| DIF_stipe_shell | YFB_veil | 0.914529 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.968853 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.865539 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.913295 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.789034 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.916098 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.866189 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.856474 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.947829 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.995451 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.981380 | no |
| DIF_stipe_skin | YFB_veil | 0.875835 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.822897 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.874839 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.978525 | no |
| DIF_cap_skin | YFB_stipe_center | 0.702416 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.639984 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.629667 | no |
| DIF_cap_skin | YFB_cap_skin | 0.747379 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.827477 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.850448 | no |
| DIF_cap_skin | YFB_veil | 0.961486 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.961725 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.939007 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.764468 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.702613 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.693319 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.805885 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.880731 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.900000 | no |
| DIF_cap_tissue | YFB_veil | 0.999564 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|083540 MWRPATKQITGTNDVPLGQRRRFGPAPAEDTAPPQLAQPSPSVYPRHRDQDTDSPGKRGREESPNRGDPKVDPNA PRKRRSRWGEAKTEIPGLPTAISAAGVSQVQLDNYAIHLRLEEINRKLRLNDFVPPERERSPSPPPTYDAHGRRT NTREVRYRKKLEDERIRLVDRAMKNDPNFRPPVEYHQQKRSQRPSEKVYIPVKEFPEINFFGLLVGPRGNSLKKM ERDSGAKISIRGKGSVKEGKARPDQFAEDAEEDLHCLVIADSDDKVAACVKMINRVIETAASTPEGQNVHKRDQL RELAALNGTLRDDENQICQNCGGIGHRKYDCPEQRNFTANIICHVCGSAGHMARDCTVNKDPNAPPRPQQQMRGG FDSEYASLMAELGEGATGGGEGGKTWGGTSMGHDITAGGSNIPPWRRPENWQQPAAAQQSQGYRPPQGYGAGYSG AGYGGAGGNAYPGYQQAGYQQPQDYSNYAAYYQGQYAQQQPS* |
| Coding | >AgabiH97|083540 ATGTGGAGACCTGCAACCAAGCAGATAACTGGCACCAACGACGTTCCCCTTGGTCAACGTCGTCGTTTTGGGCCT GCGCCTGCAGAGGACACTGCGCCGCCGCAGCTCGCGCAGCCTTCCCCTTCCGTGTACCCTCGTCACCGTGATCAG GACACTGATAGCCCTGGAAAACGCGGGCGAGAAGAATCGCCCAACAGAGGAGATCCGAAAGTTGATCCCAATGCT CCCCGCAAACGACGCAGTCGATGGGGTGAAGCAAAAACTGAAATACCCGGTCTACCAACCGCTATCTCTGCCGCT GGAGTATCCCAAGTCCAACTCGATAACTATGCGATCCACCTACGTTTAGAAGAGATTAATCGGAAGCTTCGGCTC AATGATTTTGTACCTCCAGAGCGTGAAAGATCCCCATCCCCTCCTCCAACCTATGATGCCCATGGTCGCAGGACC AATACTCGTGAAGTCCGCTACCGCAAAAAACTCGAAGATGAACGCATAAGGCTTGTGGACCGTGCAATGAAGAAT GACCCCAACTTTCGCCCGCCCGTTGAATATCATCAACAAAAACGATCTCAGAGGCCTTCTGAAAAGGTCTACATC CCAGTTAAAGAGTTTCCAGAGATCAACTTCTTTGGTTTATTAGTCGGTCCTCGTGGCAATAGTTTGAAGAAGATG GAACGCGACAGCGGTGCTAAAATTAGTATCCGTGGCAAAGGCAGCGTCAAAGAAGGGAAAGCTCGACCTGATCAA TTTGCTGAGGATGCAGAAGAAGATCTACATTGTCTTGTCATTGCTGACTCTGACGACAAGGTAGCCGCTTGCGTC AAAATGATCAACCGAGTCATAGAGACAGCGGCTTCTACTCCGGAAGGTCAAAATGTTCATAAACGTGATCAACTT CGAGAGCTCGCTGCTTTGAACGGTACTCTGCGTGACGATGAAAACCAGATTTGTCAAAATTGTGGTGGCATAGGA CATCGCAAATATGATTGTCCAGAGCAACGCAACTTTACTGCTAACATAATCTGTCATGTTTGTGGTAGTGCTGGT CATATGGCGAGGGATTGTACCGTCAACAAAGATCCTAATGCGCCGCCCCGCCCGCAGCAACAAATGAGAGGGGGT TTCGATTCTGAATACGCAAGTCTGATGGCCGAGTTAGGTGAAGGTGCAACTGGCGGCGGGGAAGGAGGAAAAACA TGGGGTGGTACTAGTATGGGTCACGACATAACAGCAGGCGGTTCTAACATCCCCCCCTGGCGTCGCCCCGAAAAC TGGCAGCAACCTGCCGCTGCGCAGCAATCACAAGGTTACCGACCTCCTCAAGGTTACGGAGCCGGTTACTCAGGT GCTGGCTATGGTGGCGCTGGAGGAAATGCGTATCCCGGTTACCAGCAAGCTGGTTATCAACAGCCTCAAGACTAC TCTAATTATGCCGCTTACTATCAAGGCCAATACGCTCAACAACAACCCAGCTGA |
| Transcript | >AgabiH97|083540 ATGTGGAGACCTGCAACCAAGCAGATAACTGGCACCAACGACGTTCCCCTTGGTCAACGTCGTCGTTTTGGGCCT GCGCCTGCAGAGGACACTGCGCCGCCGCAGCTCGCGCAGCCTTCCCCTTCCGTGTACCCTCGTCACCGTGATCAG GACACTGATAGCCCTGGAAAACGCGGGCGAGAAGAATCGCCCAACAGAGGAGATCCGAAAGTTGATCCCAATGCT CCCCGCAAACGACGCAGTCGATGGGGTGAAGCAAAAACTGAAATACCCGGTCTACCAACCGCTATCTCTGCCGCT GGAGTATCCCAAGTCCAACTCGATAACTATGCGATCCACCTACGTTTAGAAGAGATTAATCGGAAGCTTCGGCTC AATGATTTTGTACCTCCAGAGCGTGAAAGATCCCCATCCCCTCCTCCAACCTATGATGCCCATGGTCGCAGGACC AATACTCGTGAAGTCCGCTACCGCAAAAAACTCGAAGATGAACGCATAAGGCTTGTGGACCGTGCAATGAAGAAT GACCCCAACTTTCGCCCGCCCGTTGAATATCATCAACAAAAACGATCTCAGAGGCCTTCTGAAAAGGTCTACATC CCAGTTAAAGAGTTTCCAGAGATCAACTTCTTTGGTTTATTAGTCGGTCCTCGTGGCAATAGTTTGAAGAAGATG GAACGCGACAGCGGTGCTAAAATTAGTATCCGTGGCAAAGGCAGCGTCAAAGAAGGGAAAGCTCGACCTGATCAA TTTGCTGAGGATGCAGAAGAAGATCTACATTGTCTTGTCATTGCTGACTCTGACGACAAGGTAGCCGCTTGCGTC AAAATGATCAACCGAGTCATAGAGACAGCGGCTTCTACTCCGGAAGGTCAAAATGTTCATAAACGTGATCAACTT CGAGAGCTCGCTGCTTTGAACGGTACTCTGCGTGACGATGAAAACCAGATTTGTCAAAATTGTGGTGGCATAGGA CATCGCAAATATGATTGTCCAGAGCAACGCAACTTTACTGCTAACATAATCTGTCATGTTTGTGGTAGTGCTGGT CATATGGCGAGGGATTGTACCGTCAACAAAGATCCTAATGCGCCGCCCCGCCCGCAGCAACAAATGAGAGGGGGT TTCGATTCTGAATACGCAAGTCTGATGGCCGAGTTAGGTGAAGGTGCAACTGGCGGCGGGGAAGGAGGAAAAACA TGGGGTGGTACTAGTATGGGTCACGACATAACAGCAGGCGGTTCTAACATCCCCCCCTGGCGTCGCCCCGAAAAC TGGCAGCAACCTGCCGCTGCGCAGCAATCACAAGGTTACCGACCTCCTCAAGGTTACGGAGCCGGTTACTCAGGT GCTGGCTATGGTGGCGCTGGAGGAAATGCGTATCCCGGTTACCAGCAAGCTGGTTATCAACAGCCTCAAGACTAC TCTAATTATGCCGCTTACTATCAAGGCCAATACGCTCAACAACAACCCAGCTGA |
| Gene | >AgabiH97|083540 ATGTGGAGACCTGCAACCAAGCAGATAACTGGCACCAACGACGGTATGCTCAACAAAATTCTTTCTCTTCTCCCA GTTGTCTCATACTTTTTTTTCAGTTCCCCTTGGTCAACGTCGTCGTTTTGGGCCTGCGCCTGCAGAGGACACTGC GCCGCCGCAGCTCGCGCAGCCTTCCCCTTCCGTGTACCCTCGTCACCGTGATCAGGACACTGATAGCCCTGGAAA ACGCGGGCGAGAAGAATCGCCCAACAGAGGAGATCCGAAAGGTAAGTCAGCGACTGATCAGCTCTCTCGTGTTTG CCGGCAAGCTGTTCTGCTCCACGCTATCTCAGCGAACTGACGTGGCCGCCTGAAGTCATGGACACAAGGAGCATC TAAGTAACACTGAGGATGTACTAACCTTGACCCTGTTGCTGTTTCTCACTTTTACTAGTTGATCCCAATGCTCCC CGCAAACGACGCAGTCGATGGGGTGAAGCAAAAACTGAAATACCCGGTCTACCAACCGCTATCTCTGCCGCTGGA GTATCCCAAGTCCAACTCGATAACTATGCGATCCACCTACGTTTAGAAGAGATTAATCGGAAGCTTCGGCTCAAT GATTTTGTACCTCCAGAGCGTGAAAGGTAGTGTCATTCTGCGTACTTCCTTAGCCTACCGCATATATTAAGATAT TGCTTGTCCAGATCCCCATCCCCTCCTCCAACCTATGATGCCCATGGTCGCAGGACCAATACTCGTGAAGTCCGC TACCGCAAAAAACTCGAAGATGAACGCATAAGGCTTGTGGACCGTGCAATGAAGAATGACCCCAACTTTCGCCCG CCCGTTGAATATCATCAACAAAAACGATCTCAGAGGCCTTCTGAAAAGGTCTACATCCCAGTTAAAGAGTTTCCA GAGATCAACTTCTTTGGTTTATTAGTCGGTCCTCGTGGCAATAGTTTGAAGAAGATGGAACGCGACAGCGGTGCT AAAATTAGTATCCGTGGCAAAGGCAGCGTCAAAGAAGGGAAAGCTCGACCTGATCAATTTGCTGAGGATGCAGAA GAAGATCTACATTGTCTTGTCATTGCTGACTCTGACGACAAGGTAGCCGCTTGCGTCAAAATGATCAACCGAGTC ATAGAGACAGTAAGTCGTGTCGTTAGCATTTTTGAAACAATCTGACATTGGTCGAATGACCAGGCGGCTTCTACT CCGGAAGGTCAAAATGTTCATAAACGTGATCAACTTCGAGAGCTCGCTGCTTTGAACGGTACTCTGCGTGACGAT GAAAACCAGATTTGTCAAAATTGTGGTGGCATAGGACATCGCAAATATGATTGTCCAGAGCAACGCAACTTTACT GCTAACATAATCTGTCATGTTTGTGGTAGTGCTGGTCATATGGCGAGGGATTGTACCGTCAACAAAGATCCTAAT GCGCCGCCCCGCCCGCAGCAACAAATGAGAGGGGGTTTCGATTCTGAATACGCAAGTCTGATGGCCGAGTTAGGT GAAGGTGCAACTGGCGGCGGGGAAGGAGGAAAAACATGGGGTGGTACTAGTATGGGTCACGACATAACAGCAGGC GGTTCTAACATCCCCCCCTGGCGTCGCCCCGAAAACTGGCAGCAACCTGCCGCTGCGCAGCAATCACAAGGTTAC CGACCTCCTCAAGGTTACGGAGCCGGTTACTCAGGTGCTGGCTATGGTGGCGCTGGAGGAAATGCGTATCCCGGT TACCAGCAAGCTGGTTATCAACAGCCTCAAGACTACTCTAATTATGCCGCTTACTATCAAGGCCAATACGCTCAA CAACAACCCAGCTGA |