© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|082990 |
| Gene name | |
| Location | scaffold_5:1197760..1198476 |
| Strand | + |
| Gene length (bp) | 716 |
| Transcript length (bp) | 555 |
| Coding sequence length (bp) | 555 |
| Protein length (aa) | 185 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 66.52 | 33.51 | 99.52 |
| Initials | Initials knots | 6.36 | 2.28 | 10.45 |
| Pileal_Stipeal_center | Stage I stipe center | 5.90 | 2.07 | 9.72 |
| Pileal_Stipeal_shell | Stage I stipe shell | 4.24 | 1.32 | 7.16 |
| DIF_stipe_center | Stage II stipe center | 4.61 | 1.48 | 7.74 |
| DIF_stipe_shell | Stage II stipe shell | 6.62 | 2.38 | 10.86 |
| DIF_stipe_skin | Stage II stipe skin | 6.01 | 1.95 | 10.07 |
| DIF_cap_skin | Stage II cap skin | 2.57 | 0.59 | 4.55 |
| DIF_cap_tissue | Stage II cap tissue | 4.10 | 1.25 | 6.94 |
| DIF_gill_tissue | Stage II gill tissue | 5.92 | 2.07 | 9.78 |
| YFB_stipe_center | Young fruiting body stipe center | 4.90 | 1.56 | 8.24 |
| YFB_stipe_shell | Young fruiting body stipe shell | 8.30 | 3.07 | 13.52 |
| YFB_stipe_skin | Young fruiting body stipe skin | 8.24 | 3.18 | 13.29 |
| YFB_cap_skin | Young fruiting body cap skin | 3.14 | 0.79 | 5.50 |
| YFB_cap_tissue | Young fruiting body cap tissue | 5.33 | 1.79 | 8.86 |
| YFB_gill_tissue | Young fruiting body gill tissue | 3.15 | 0.80 | 5.49 |
| YFB_veil | Young fruiting body veil | 2.70 | 0.62 | 4.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.000613 | yes |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.000613 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.798401 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.559836 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.556243 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.222470 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.897656 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.222923 | no |
| DIF_gill_tissue | YFB_veil | 0.111025 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.302307 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.300978 | no |
| YFB_stipe_center | YFB_cap_skin | 0.466664 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.925025 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.473191 | no |
| YFB_stipe_center | YFB_veil | 0.283169 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.992397 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.043983 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.390800 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.037818 | yes |
| YFB_stipe_shell | YFB_veil | 0.017783 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.042041 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.390721 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.036455 | yes |
| YFB_stipe_skin | YFB_veil | 0.017507 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.336047 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.993176 | no |
| YFB_cap_skin | YFB_veil | 0.865403 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.342199 | no |
| YFB_cap_tissue | YFB_veil | 0.182435 | no |
| YFB_gill_tissue | YFB_veil | 0.863152 | no |
| Initials | DIF_gill_tissue | 0.932286 | no |
| Initials | YFB_stipe_center | 0.697309 | no |
| Initials | YFB_stipe_shell | 0.673763 | no |
| Initials | YFB_stipe_skin | 0.670818 | no |
| Initials | YFB_cap_skin | 0.160907 | no |
| Initials | YFB_cap_tissue | 0.807607 | no |
| Initials | YFB_gill_tissue | 0.162096 | no |
| Initials | YFB_veil | 0.076262 | no |
| Initials | Pileal_Stipeal_center | 0.927152 | no |
| Initials | Pileal_Stipeal_shell | 0.475905 | no |
| Initials | DIF_stipe_center | 0.607845 | no |
| Initials | DIF_stipe_shell | 0.963050 | no |
| Initials | DIF_stipe_skin | 0.948641 | no |
| Initials | DIF_cap_skin | 0.063954 | no |
| Initials | DIF_cap_tissue | 0.420780 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.995303 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.802589 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.555787 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.551745 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.228817 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.902642 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.230028 | no |
| Pileal_Stipeal_center | YFB_veil | 0.112721 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.599481 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.722973 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.885362 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.982888 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.090829 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.541416 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.582971 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.861839 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.162495 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.158357 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.670322 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.747457 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.673213 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.469825 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.926419 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.430033 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.579258 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.407913 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.969994 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.710589 | no |
| DIF_stipe_center | YFB_stipe_center | 0.949084 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.231107 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.225481 | no |
| DIF_stipe_center | YFB_cap_skin | 0.548920 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.858179 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.554794 | no |
| DIF_stipe_center | YFB_veil | 0.351745 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.550150 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.707171 | no |
| DIF_stipe_center | DIF_cap_skin | 0.295620 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.891802 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.888742 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.636724 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.733644 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.733033 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.139559 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.749294 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.138008 | no |
| DIF_stipe_shell | YFB_veil | 0.064333 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.910194 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.055182 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.369198 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.986394 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.789910 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.598702 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.595736 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.228711 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.884441 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.227928 | no |
| DIF_stipe_skin | YFB_veil | 0.117172 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.094657 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.527764 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.091664 | no |
| DIF_cap_skin | YFB_stipe_center | 0.244478 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.015242 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.015529 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.812099 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.157303 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.813613 | no |
| DIF_cap_skin | YFB_veil | 0.959650 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.450877 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.527009 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.818295 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.134423 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.132135 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.717812 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.697022 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.721555 | no |
| DIF_cap_tissue | YFB_veil | 0.510660 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|082990 MFFFRAICALTALTATFAEPIIARQNGNTNQQISDVIDPLAVQTRNNIFLLNTLQANQTASDETVGVVVQQMVAQ YNDAASGLGAIPVSTGSDTVQPTDIELSRVFGEILQVLGTGLSGLQAQGSVPNFGNMVSQLDPAVAASATALSQV SPGSLEFAHILLLDVSQFFVAMGVWPETLAVMGF* |
| Coding | >AgabiH97|082990 ATGTTTTTCTTCCGTGCCATTTGCGCTCTTACCGCCCTTACCGCCACATTTGCGGAACCCATCATCGCTAGGCAG AACGGGAACACCAACCAGCAGATCTCGGATGTCATTGACCCTCTTGCCGTGCAGACACGCAACAACATCTTCTTG CTTAACACTTTGCAGGCCAACCAGACTGCATCTGACGAGACTGTTGGTGTTGTAGTCCAACAGATGGTCGCGCAA TACAACGATGCAGCTTCTGGCCTGGGAGCAATTCCTGTCAGCACCGGTTCCGATACAGTGCAACCCACAGACATC GAATTGAGCCGAGTATTCGGTGAAATACTTCAGGTTCTTGGCACTGGCCTCTCCGGTCTCCAGGCCCAAGGATCC GTTCCCAACTTTGGCAACATGGTTTCTCAGCTTGATCCTGCTGTCGCTGCCTCTGCCACCGCTCTGTCCCAAGTC TCACCTGGTAGTCTCGAATTCGCGCATATCTTGTTACTCGACGTAAGCCAATTCTTTGTCGCTATGGGAGTCTGG CCAGAGACCCTCGCCGTTATGGGTTTCTGA |
| Transcript | >AgabiH97|082990 ATGTTTTTCTTCCGTGCCATTTGCGCTCTTACCGCCCTTACCGCCACATTTGCGGAACCCATCATCGCTAGGCAG AACGGGAACACCAACCAGCAGATCTCGGATGTCATTGACCCTCTTGCCGTGCAGACACGCAACAACATCTTCTTG CTTAACACTTTGCAGGCCAACCAGACTGCATCTGACGAGACTGTTGGTGTTGTAGTCCAACAGATGGTCGCGCAA TACAACGATGCAGCTTCTGGCCTGGGAGCAATTCCTGTCAGCACCGGTTCCGATACAGTGCAACCCACAGACATC GAATTGAGCCGAGTATTCGGTGAAATACTTCAGGTTCTTGGCACTGGCCTCTCCGGTCTCCAGGCCCAAGGATCC GTTCCCAACTTTGGCAACATGGTTTCTCAGCTTGATCCTGCTGTCGCTGCCTCTGCCACCGCTCTGTCCCAAGTC TCACCTGGTAGTCTCGAATTCGCGCATATCTTGTTACTCGACGTAAGCCAATTCTTTGTCGCTATGGGAGTCTGG CCAGAGACCCTCGCCGTTATGGGTTTCTGA |
| Gene | >AgabiH97|082990 ATGTTTTTCTTCCGTGCCATTTGCGCTCTTACCGCCCTTACCGCCACATTTGCGGAACCCATCATCGCTAGGCAG AACGGGAACACCAACCAGCAGATCTCGGATGTCATTGACCCTCTTGCCGTGCAGACACGCAACAACATCTTCTTG CTTAGTAGGTTTGAGTGTGCGGCATAAATAACTGCGGCTAAAAAAAACTTTCAGACACTTTGCAGGCCAACCAGA CTGCATCTGACGAGACTGTTGGTGTTGTAGTCCAACAGATGGTCGCGCAATACAACGATGCAGCTTCTGGCCTGG GAGCAATTCCTGTCAGCACCGGTTCCGATACAGTGCAACCCACAGACATCGAATTGAGCCGAGTATTCGGTGAAA TACTTCAGTACGTCAAAAGCATAATCCCCGGTTTCAGACTTTCAGGCATCTGACTACGGCAAATAGGGTTCTTGG CACTGGCCTCTCCGGTCTCCAGGCCCAAGGATCCGTTCCCAACTTTGGCAACATGGTTTCTCAGCTTGATCCTGC TGTCGCTGCCTCTGCCACCGCTCTGTCCCAAGTCTCACCTGGTAGTCTCGAATTCGCGCATATCTTGTGAGCACC TTTGAACGCAAAAAAGATGGTCATAACTAACGTGAAAACTCAGGTTACTCGACGTAAGCCAATTCTTTGTCGCTA TGGGAGTCTGGCCAGAGACCCTCGCCGTTATGGGTTTCTGA |