Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|082720
Gene name
Locationscaffold_5:1130687..1131984
Strand+
Gene length (bp)1297
Transcript length (bp)1077
Coding sequence length (bp)1077
Protein length (aa) 359

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11790 Glyco_hydro_cc Glycosyl hydrolase catalytic core 1.7E-48 125 350

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q09788|ASL1_SCHPO Alkali-sensitive linkage protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=asl1 PE=1 SV=1 168 352 4.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|082720
MLVFKLCFSSLALVSLAGPMLTAYASSQHHHHHLSSRMTRNRRNLCLPRKPSASPEAVAVSTEHSQVEPTPVQAS
VSSSLDSVPSSTDQPDVASSSYNTLTPSISSLYIPNGIKAGVAGGDAYTILQNHIGWWYDWSANPHKPGNPIAVP
MLWGTGKVDSTDAKRLADFKKLSSSSSSSQRPQFVLGYEEPDCTSGGGSSGVSVEQGVEEWENLMGPLKRKGTKI
GSPSMCKQADETWLKEFSKKISTAWDFTAIHVNKNNLDGVKKDIDHYWATYGKPIWVTEFACVNDHNTFQPCTNQ
QQINTFIQQAVDYFEHDSRVYAYAFSNGEGLGTVWPMMHGGKFSESGKAYLAAISKYH*
Coding >AgabiH97|082720
ATGCTTGTGTTCAAACTGTGTTTCTCTTCGCTCGCTCTTGTGTCTTTGGCTGGTCCAATGCTCACCGCCTATGCG
TCGTCTCAGCACCACCACCACCACCTTTCTTCACGCATGACTCGCAACCGGCGGAACCTATGTCTGCCCCGTAAG
CCATCCGCATCCCCAGAAGCAGTGGCAGTCAGTACGGAACATTCTCAAGTCGAACCTACACCAGTCCAGGCCTCT
GTTTCATCTTCATTAGATTCGGTGCCAAGTTCTACAGACCAGCCTGATGTCGCGTCTTCTTCATATAACACACTG
ACTCCGTCAATTTCTTCCTTATACATACCCAATGGGATCAAAGCCGGTGTAGCAGGTGGCGATGCCTATACCATT
TTACAAAATCACATTGGATGGTGGTATGATTGGTCTGCCAACCCACATAAACCTGGCAATCCGATCGCTGTACCC
ATGCTTTGGGGTACAGGCAAGGTGGATTCAACGGATGCGAAGCGGTTAGCTGATTTTAAGAAACTCTCGTCATCG
TCGTCGTCCTCTCAACGTCCACAATTTGTACTTGGATATGAGGAACCGGATTGTACGAGTGGAGGTGGATCGAGT
GGTGTGAGCGTTGAACAGGGTGTTGAAGAATGGGAGAATTTGATGGGGCCGTTGAAGAGAAAAGGAACCAAGATT
GGAAGTCCATCCATGTGCAAACAAGCGGATGAAACGTGGCTCAAGGAGTTTTCGAAGAAAATATCGACGGCTTGG
GATTTTACTGCGATTCATGTGAACAAGAATAATTTGGATGGAGTGAAGAAGGATATCGACCATTACTGGGCTACA
TATGGAAAACCAATCTGGGTAACTGAATTCGCCTGCGTGAACGACCACAACACGTTCCAGCCATGCACGAACCAA
CAACAAATCAATACTTTCATTCAACAAGCCGTGGATTATTTTGAACATGACAGCAGGGTGTACGCTTATGCGTTT
AGCAATGGAGAAGGATTGGGCACTGTTTGGCCGATGATGCATGGTGGTAAATTCAGTGAATCTGGCAAAGCTTAT
CTAGCTGCTATCAGCAAGTATCATTAA
Transcript >AgabiH97|082720
ATGCTTGTGTTCAAACTGTGTTTCTCTTCGCTCGCTCTTGTGTCTTTGGCTGGTCCAATGCTCACCGCCTATGCG
TCGTCTCAGCACCACCACCACCACCTTTCTTCACGCATGACTCGCAACCGGCGGAACCTATGTCTGCCCCGTAAG
CCATCCGCATCCCCAGAAGCAGTGGCAGTCAGTACGGAACATTCTCAAGTCGAACCTACACCAGTCCAGGCCTCT
GTTTCATCTTCATTAGATTCGGTGCCAAGTTCTACAGACCAGCCTGATGTCGCGTCTTCTTCATATAACACACTG
ACTCCGTCAATTTCTTCCTTATACATACCCAATGGGATCAAAGCCGGTGTAGCAGGTGGCGATGCCTATACCATT
TTACAAAATCACATTGGATGGTGGTATGATTGGTCTGCCAACCCACATAAACCTGGCAATCCGATCGCTGTACCC
ATGCTTTGGGGTACAGGCAAGGTGGATTCAACGGATGCGAAGCGGTTAGCTGATTTTAAGAAACTCTCGTCATCG
TCGTCGTCCTCTCAACGTCCACAATTTGTACTTGGATATGAGGAACCGGATTGTACGAGTGGAGGTGGATCGAGT
GGTGTGAGCGTTGAACAGGGTGTTGAAGAATGGGAGAATTTGATGGGGCCGTTGAAGAGAAAAGGAACCAAGATT
GGAAGTCCATCCATGTGCAAACAAGCGGATGAAACGTGGCTCAAGGAGTTTTCGAAGAAAATATCGACGGCTTGG
GATTTTACTGCGATTCATGTGAACAAGAATAATTTGGATGGAGTGAAGAAGGATATCGACCATTACTGGGCTACA
TATGGAAAACCAATCTGGGTAACTGAATTCGCCTGCGTGAACGACCACAACACGTTCCAGCCATGCACGAACCAA
CAACAAATCAATACTTTCATTCAACAAGCCGTGGATTATTTTGAACATGACAGCAGGGTGTACGCTTATGCGTTT
AGCAATGGAGAAGGATTGGGCACTGTTTGGCCGATGATGCATGGTGGTAAATTCAGTGAATCTGGCAAAGCTTAT
CTAGCTGCTATCAGCAAGTATCATTAA
Gene >AgabiH97|082720
ATGCTTGTGTTCAAACTGTGTTTCTCTTCGCTCGCTCTTGTGTCTTTGGCTGGTCCAATGCTCACCGCCTATGCG
TCGTCTCAGCACCACCACCACCACCTTTCTTCACGCATGACTCGCAACCGGCGGAACCTATGTCTGCCCCGTAAG
CCATCCGCATCCCCAGAAGCAGTGGCAGTCAGTACGGAACATTCTCAAGTCGAACCTACACCAGTCCAGGCCTCT
GTTTCATCTTCATTAGATTCGGTGCCAAGTTCTACAGACCAGCCTGATGTCGCGTCTTCTTCATATAACACACTG
ACTCCGTCAATTTCTTCCTTATACATACCCAATGGGATCAAAGCCGGTGTAGCAGGTGGCGATGCCTATACCATT
TTACAAAATCACATTGGATGGTGGTATGATTGGTCTGCCAACCCACATAAACCTGGCAATCCGATCGCTGTACCC
ATGCTTTGGGGTACAGGCAAGGTGGATTCAACGGATGCGAAGCGGTTAGCTGATTTTAAGAAACTCTCGTCATCG
TCGTCGTCCTCTCAACGTCCACAATTTGTACTTGGATATGAGGAACCGGATTGTACGAGTGGAGGTGGATCGAGT
GGTGTGAGCGTTGAACAGGGTGTTGAAGAATGGGAGAATTTGATGGGGCCGTTGAAGAGAAAAGGAACCAAGATT
GGAAGTCCATCCATGTGCAGTGAGTTATTTTTTCCCGTTAAAACGAACGAAATGAAAGTCATTCTAACACATTCT
ATGAATGATAGAACAAGCGGATGAAACGTGGCTCAAGGAGTTTTCGAAGAAAATATCGACGGCTTGGGATTTTAC
TGCGATTCATGTGAACAAGAATAATTTGGATGGAGTGAAGAAGGATATCGTACGTTGTCAAATTGATTCAACACT
GGTCAGAAATTGAATTTCCTTGTGTAGGACCATTACTGGGCTACATATGGAAAACCAATCTGGGTAACTGAATTC
GCCTGCGTGAACGGTGCGTGTTTTTTTTTCTTTACGTTTACTACGGTATTGACATGAAAACATAGACCACAACAC
GTTCCAGCCATGCACGAACCAACAACAAATCAATACTTTCATTCAACAAGCCGTGGATTATTTTGAACATGACAG
CAGGGTGTACGCTTATGCGTTTAGCAATGGAGAAGGATTGGGCACTGTTTGGCCGATGATGCATGGTGGTAAATT
CAGGTAAAGAGTTTTTCTACTTTTGCTCATGTGTGATTAACGTCTCTACAGTGAATCTGGCAAAGCTTATCTAGC
TGCTATCAGCAAGTATCATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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