Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|081980
Gene name
Location	scaffold_5:961357..962095
Strand	+
Gene length (bp)	738
Transcript length (bp)	738
Coding sequence length (bp)	738
Protein length (aa)	246

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	2.6E-11	27	158

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 25	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|081980 MVWRDGGMAESLWALETCLWQAEGGWLYLMVEQEQRIHFQGIQDSPVKMWEALEAVHRQKRAGMRFNAYDDLFSI RKLEEESLQSLINRVESSKRKIKELRPSSFTLEQLDDELASMALIRALPDAFSGFTSSLLLMDKLDKTTVHQAFV TEDLQRKKRAQDSSTTEYISILIHTSGITTRSRGFLPSPVYRGPELQYSIYKTVSSATRSSAIEKEKKKKKTDQD IDTYVRGPGIKPSSQAIHPT*
Coding	>AgabiH97\|081980 ATGGTCTGGAGAGATGGAGGCATGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCGGC TGGCTGTACCTTATGGTGGAGCAGGAGCAGAGAATCCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGG GAGGCTCTAGAGGCTGTACATCGTCAGAAGAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTTTCCATC CGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTC CGCCCCTCTTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGAC GCGTTTTCCGGCTTCACATCGTCCCTACTGCTTATGGACAAGCTGGACAAGACTACAGTCCACCAGGCCTTTGTT ACAGAGGACTTACAACGCAAAAAACGCGCTCAGGACTCCTCTACAACAGAGTATATTTCAATACTAATTCATACA TCGGGTATCACGACACGTTCCCGCGGCTTTCTACCCTCGCCAGTTTACAGAGGCCCAGAACTACAGTATTCTATC TACAAAACCGTATCCAGCGCGACGAGGTCAAGCGCTATCGAGAAAGAGAAAAAGAAAAAGAAAACAGATCAAGAC ATTGATACATACGTAAGAGGCCCCGGGATAAAACCAAGCAGTCAGGCAATACATCCTACATAA
Transcript	>AgabiH97\|081980 ATGGTCTGGAGAGATGGAGGCATGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCGGC TGGCTGTACCTTATGGTGGAGCAGGAGCAGAGAATCCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGG GAGGCTCTAGAGGCTGTACATCGTCAGAAGAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTTTCCATC CGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTC CGCCCCTCTTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGAC GCGTTTTCCGGCTTCACATCGTCCCTACTGCTTATGGACAAGCTGGACAAGACTACAGTCCACCAGGCCTTTGTT ACAGAGGACTTACAACGCAAAAAACGCGCTCAGGACTCCTCTACAACAGAGTATATTTCAATACTAATTCATACA TCGGGTATCACGACACGTTCCCGCGGCTTTCTACCCTCGCCAGTTTACAGAGGCCCAGAACTACAGTATTCTATC TACAAAACCGTATCCAGCGCGACGAGGTCAAGCGCTATCGAGAAAGAGAAAAAGAAAAAGAAAACAGATCAAGAC ATTGATACATACGTAAGAGGCCCCGGGATAAAACCAAGCAGTCAGGCAATACATCCTACATAA
Gene	>AgabiH97\|081980 ATGGTCTGGAGAGATGGAGGCATGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCGGC TGGCTGTACCTTATGGTGGAGCAGGAGCAGAGAATCCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGG GAGGCTCTAGAGGCTGTACATCGTCAGAAGAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTTTCCATC CGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTC CGCCCCTCTTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGAC GCGTTTTCCGGCTTCACATCGTCCCTACTGCTTATGGACAAGCTGGACAAGACTACAGTCCACCAGGCCTTTGTT ACAGAGGACTTACAACGCAAAAAACGCGCTCAGGACTCCTCTACAACAGAGTATATTTCAATACTAATTCATACA TCGGGTATCACGACACGTTCCCGCGGCTTTCTACCCTCGCCAGTTTACAGAGGCCCAGAACTACAGTATTCTATC TACAAAACCGTATCCAGCGCGACGAGGTCAAGCGCTATCGAGAAAGAGAAAAAGAAAAAGAAAACAGATCAAGAC ATTGATACATACGTAAGAGGCCCCGGGATAAAACCAAGCAGTCAGGCAATACATCCTACATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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