© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|081580 |
| Gene name | |
| Location | scaffold_5:882343..883568 |
| Strand | + |
| Gene length (bp) | 1225 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02840 | Prp18 | Prp18 domain | 8.5E-62 | 188 | 327 |
| PF08799 | PRP4 | pre-mRNA processing factor 4 (PRP4) like | 2.5E-11 | 91 | 118 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6GMH0|PRP18_DANRE | Pre-mRNA-splicing factor 18 OS=Danio rerio GN=prpf18 PE=2 SV=1 | 1 | 329 | 1.0E-71 |
| sp|Q99633|PRP18_HUMAN | Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1 | 1 | 329 | 2.0E-70 |
| sp|Q5RE03|PRP18_PONAB | Pre-mRNA-splicing factor 18 OS=Pongo abelii GN=PRPF18 PE=2 SV=1 | 1 | 329 | 5.0E-70 |
| sp|Q2HJ41|PRP18_BOVIN | Pre-mRNA-splicing factor 18 OS=Bos taurus GN=PRPF18 PE=2 SV=1 | 1 | 329 | 5.0E-70 |
| sp|Q9JKB8|PRP18_RAT | Pre-mRNA-splicing factor 18 OS=Rattus norvegicus GN=Prpf18 PE=2 SV=1 | 1 | 329 | 6.0E-70 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6GMH0|PRP18_DANRE | Pre-mRNA-splicing factor 18 OS=Danio rerio GN=prpf18 PE=2 SV=1 | 1 | 329 | 1.0E-71 |
| sp|Q99633|PRP18_HUMAN | Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1 | 1 | 329 | 2.0E-70 |
| sp|Q5RE03|PRP18_PONAB | Pre-mRNA-splicing factor 18 OS=Pongo abelii GN=PRPF18 PE=2 SV=1 | 1 | 329 | 5.0E-70 |
| sp|Q2HJ41|PRP18_BOVIN | Pre-mRNA-splicing factor 18 OS=Bos taurus GN=PRPF18 PE=2 SV=1 | 1 | 329 | 5.0E-70 |
| sp|Q9JKB8|PRP18_RAT | Pre-mRNA-splicing factor 18 OS=Rattus norvegicus GN=Prpf18 PE=2 SV=1 | 1 | 329 | 6.0E-70 |
| sp|Q8BM39|PRP18_MOUSE | Pre-mRNA-splicing factor 18 OS=Mus musculus GN=Prpf18 PE=1 SV=1 | 1 | 329 | 2.0E-69 |
| sp|Q5EAV6|PRP18_XENLA | Pre-mRNA-splicing factor 18 OS=Xenopus laevis GN=prpf18 PE=2 SV=1 | 1 | 335 | 2.0E-67 |
| sp|O94406|PRP18_SCHPO | Pre-mRNA-splicing factor 18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp18 PE=3 SV=1 | 1 | 323 | 5.0E-33 |
| sp|P33411|PRP18_YEAST | Pre-mRNA-splicing factor 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP18 PE=1 SV=3 | 241 | 321 | 4.0E-17 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005681 | spliceosomal complex | Yes |
| GO:0008380 | RNA splicing | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|081580 MDSLKALVAEKRKAIDNDSARPAKYMRRGELERIKEEQEAKVREEKQLAQAAKKREEAEKAPKKPSVLSPPRDTE SPSIESAFNISNEETIRRLRAKGQPIRLFGESDKDRRLRLRALELIEERSSEHQGGHNDFKKALEDVESVEKELQ SKNGKGKKKEGESVNVGALDLNLVKTDPDKLYPLIYYALKKVLKEWEEAMDDRPDHVKRTNQGKLAAATQVQSAE YLKPLFKNLRSRTLPPDMLARIAEIVHYMQKREYQKANDAYLRLSIGNAPWPIGVTMVGIHERSAREKISRDQVA HVLNDEVSRKYIQSLKRLLTFSQTKYPPEDISQLMG* |
| Coding | >AgabiH97|081580 ATGGACTCCCTCAAGGCTCTCGTCGCAGAAAAGCGTAAAGCTATCGACAATGACTCGGCCAGGCCTGCGAAATAC ATGCGCAGAGGCGAACTCGAGCGCATCAAGGAGGAACAAGAGGCAAAGGTTCGCGAGGAGAAACAACTAGCGCAG GCGGCAAAGAAACGAGAAGAGGCCGAGAAGGCCCCCAAGAAACCATCGGTACTTTCACCTCCTCGCGACACAGAG TCTCCCAGTATAGAGTCGGCCTTCAACATCTCCAATGAAGAGACTATTCGCCGACTACGTGCCAAGGGCCAGCCC ATTCGCTTGTTCGGCGAGTCAGACAAAGACCGTCGTCTAAGGCTTCGCGCCCTTGAACTCATCGAAGAGCGCAGC AGTGAGCACCAGGGCGGTCACAATGATTTCAAAAAGGCTCTGGAGGATGTGGAGAGCGTCGAAAAAGAGTTGCAG AGCAAGAACGGCAAGGGCAAAAAGAAAGAGGGTGAATCCGTCAATGTAGGCGCCCTCGACCTCAACCTCGTCAAG ACGGACCCAGACAAACTCTACCCCCTCATCTACTATGCCCTCAAGAAGGTGCTCAAAGAGTGGGAAGAAGCAATG GACGATCGACCAGACCACGTCAAACGAACCAATCAGGGAAAACTCGCCGCTGCTACACAAGTTCAGTCAGCAGAA TACCTGAAACCTCTTTTCAAAAACTTACGGTCAAGGACTCTCCCTCCCGACATGCTTGCCCGCATCGCCGAAATA GTACATTACATGCAAAAGAGAGAGTATCAAAAAGCCAACGATGCCTATCTTCGGCTTTCAATAGGAAACGCTCCA TGGCCTATTGGTGTAACCATGGTTGGTATTCATGAACGTTCTGCACGGGAAAAGATATCGAGAGATCAAGTGGCA CATGTTTTGAACGACGAAGTCAGTCGGAAATATATTCAAAGCCTCAAACGATTGCTCACATTTTCTCAAACAAAA TACCCGCCAGAGGATATCTCGCAGCTCATGGGTTAA |
| Transcript | >AgabiH97|081580 ATGGACTCCCTCAAGGCTCTCGTCGCAGAAAAGCGTAAAGCTATCGACAATGACTCGGCCAGGCCTGCGAAATAC ATGCGCAGAGGCGAACTCGAGCGCATCAAGGAGGAACAAGAGGCAAAGGTTCGCGAGGAGAAACAACTAGCGCAG GCGGCAAAGAAACGAGAAGAGGCCGAGAAGGCCCCCAAGAAACCATCGGTACTTTCACCTCCTCGCGACACAGAG TCTCCCAGTATAGAGTCGGCCTTCAACATCTCCAATGAAGAGACTATTCGCCGACTACGTGCCAAGGGCCAGCCC ATTCGCTTGTTCGGCGAGTCAGACAAAGACCGTCGTCTAAGGCTTCGCGCCCTTGAACTCATCGAAGAGCGCAGC AGTGAGCACCAGGGCGGTCACAATGATTTCAAAAAGGCTCTGGAGGATGTGGAGAGCGTCGAAAAAGAGTTGCAG AGCAAGAACGGCAAGGGCAAAAAGAAAGAGGGTGAATCCGTCAATGTAGGCGCCCTCGACCTCAACCTCGTCAAG ACGGACCCAGACAAACTCTACCCCCTCATCTACTATGCCCTCAAGAAGGTGCTCAAAGAGTGGGAAGAAGCAATG GACGATCGACCAGACCACGTCAAACGAACCAATCAGGGAAAACTCGCCGCTGCTACACAAGTTCAGTCAGCAGAA TACCTGAAACCTCTTTTCAAAAACTTACGGTCAAGGACTCTCCCTCCCGACATGCTTGCCCGCATCGCCGAAATA GTACATTACATGCAAAAGAGAGAGTATCAAAAAGCCAACGATGCCTATCTTCGGCTTTCAATAGGAAACGCTCCA TGGCCTATTGGTGTAACCATGGTTGGTATTCATGAACGTTCTGCACGGGAAAAGATATCGAGAGATCAAGTGGCA CATGTTTTGAACGACGAAGTCAGTCGGAAATATATTCAAAGCCTCAAACGATTGCTCACATTTTCTCAAACAAAA TACCCGCCAGAGGATATCTCGCAGCTCATGGGTTAA |
| Gene | >AgabiH97|081580 ATGGACTCCCTCAAGGCTCTCGTCGCAGAAAAGCGTAAAGCTATCGACAATGACTCGGCCAGGCCTGCGAAATAC ATGCGCAGAGGCGAACTCGAGCGCATCAAGGAGGAACAAGAGGCAAAGGTTCGCGAGGAGAAACAACTAGCGCAG GCGGCAAAGAAACGAGAAGAGGCCGAGAAGGCCCCCAAGAAAGTGAGCCTGACCGATATTCTGTTCTCAATTTAG GACCCTAATTTCGCTGTTGGAGAACAGCCATCGGTACTTTCACCTCCTCGCGACACAGAGTCTCCCAGTATAGAG TCGGCCTTCAACATCTCCAATGAAGAGACTATTCGCCGACTACGTGCCAAGGGCCAGCCCATTCGCTTGTTCGGC GAGTCAGACAAAGACCGTCGTCTAAGGCTTCGCGCCCTTGAACTCATCGAAGAGCGCAGCAGTGAGCACCAGGGC GGTCACAATGATTTCAAAAAGGCTCTGGAGGATGTGGAGAGCGTCGAAAAAGAGTTGCAGAGCAAGAACGGCAAG GGCAAAAAGAAAGAGGGTGAATCCGTCAATGTAGGCGCCCTCGACCTCAACCTCGTCAAGACGGACCCAGACAAA CTCTACCCCCTCATCTACTATGCCCTCAAGAAGGTGCTCAAAGAGTGGGAAGAAGCAATGGACGATCGACCAGAC CACGTCAAACGAACCAATCAGGGAAAACTCGCCGCTGCTACACAAGTTCAGTCAGCAGAATACCTGAAACCTCTT TTCAAAAACTTACGGTCAAGGGTATGTATTATTATTACTTAGCAATTTAAACCCTGCCTGATTGTCTTGTAGACT CTCCCTCCCGACATGCTTGCCCGCATCGCCGAAATAGTACATTACATGCAAAAGAGAGAGTATCAAAAAGCCAAC GATGCCTATCTTCGGCTTTCAATAGGAAACGCTCCATGGCCTATTGGTGTAACCATGGTTGGGTATGTCAGAATG GCTCATCTTTAAAATCTATCATATTAACCACACCGTAGTATTCATGAACGTTCTGCACGGGAAAAGATATCGAGA GATCAAGTGGCACATGTTTTGAACGACGAAGTCAGTCGGAAATATATTCAAAGCCTCAAACGGTATGTCTCTTGC TTCGTAACTTACTTTTAACTCAACTTCGCATAATCGCAGATTGCTCACATTTTCTCAAACAAAATACCCGCCAGA GGATATCTCGCAGCTCATGGGTTAA |