Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|081460
Gene name
Locationscaffold_5:859703..861089
Strand+
Gene length (bp)1386
Transcript length (bp)1272
Coding sequence length (bp)1272
Protein length (aa) 424

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09335 SNARE_assoc SNARE associated Golgi protein 1.1E-11 148 268

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5BJD5|TM41B_HUMAN Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1 32 313 1.0E-37
sp|Q5RBZ8|TM41B_PONAB Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1 32 313 8.0E-37
sp|Q5ZIL6|TM41B_CHICK Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1 73 313 1.0E-36
sp|Q8K1A5|TM41B_MOUSE Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=1 SV=1 94 313 2.0E-36
sp|A1A5V7|TM41B_DANRE Transmembrane protein 41B OS=Danio rerio GN=tmem41b PE=2 SV=1 31 313 3.0E-36
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Swissprot ID Swissprot Description Start End E-value
sp|Q5BJD5|TM41B_HUMAN Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1 32 313 1.0E-37
sp|Q5RBZ8|TM41B_PONAB Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1 32 313 8.0E-37
sp|Q5ZIL6|TM41B_CHICK Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1 73 313 1.0E-36
sp|Q8K1A5|TM41B_MOUSE Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=1 SV=1 94 313 2.0E-36
sp|A1A5V7|TM41B_DANRE Transmembrane protein 41B OS=Danio rerio GN=tmem41b PE=2 SV=1 31 313 3.0E-36
sp|Q5FVN2|TM41B_RAT Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1 94 313 8.0E-36
sp|Q5U4K5|TM41B_XENLA Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1 57 313 8.0E-36
sp|Q9VX39|TM41_DROME Transmembrane protein 41 homolog OS=Drosophila melanogaster GN=stas PE=2 SV=2 80 313 3.0E-34
sp|A4II98|TM41B_XENTR Transmembrane protein 41B OS=Xenopus tropicalis GN=tmem41b PE=2 SV=1 57 313 4.0E-34
sp|Q8MXN7|TM41_DICDI Transmembrane protein 41 homolog OS=Dictyostelium discoideum GN=DDB_G0275543 PE=3 SV=2 90 301 6.0E-30
sp|O62126|TM41_CAEEL Transmembrane protein 41 homolog OS=Caenorhabditis elegans GN=tag-175 PE=3 SV=1 94 305 2.0E-29
sp|Q96HV5|TM41A_HUMAN Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=1 SV=1 61 317 4.0E-27
sp|Q08D99|TM41A_BOVIN Transmembrane protein 41A OS=Bos taurus GN=TMEM41A PE=2 SV=1 98 317 7.0E-27
sp|Q9D8U2|TM41A_MOUSE Transmembrane protein 41A OS=Mus musculus GN=Tmem41a PE=2 SV=1 95 317 1.0E-25
sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1 30 281 4.0E-25
sp|Q502G2|T41AA_DANRE Transmembrane protein 41A-A OS=Danio rerio GN=tmem41aa PE=2 SV=1 105 321 9.0E-24
sp|Q6NV38|T41AB_DANRE Transmembrane protein 41A-B OS=Danio rerio GN=tmem41ab PE=2 SV=1 98 321 3.0E-16
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 45 0.45

Transmembrane Domains

Domain # Start End Length
1 75 97 22
2 132 154 22
3 174 196 22
4 245 267 22
5 282 304 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|081460
MPPPLLVLDPHLGTSHRNDSMYTLNTVADDDDSSSRRSSNTSPLLSSDSQSYGTTPNSQSRPSSGKVILHATLKM
ACIFLVSTLLLGGVLWIALPTLDDADRPLLRIPKSFSQLQDLNGLLKKYRDIYPYRIVVCYVITYLFLQAFSLPG
SMYLSILGGAVWGVTRALPLTCCCVATGATLCYLISAALGPALLTIPKWKAVLDKWADKIQANKENMISFLIVLR
IAPLPPHWVVNVLCPHVGIGIVPFWISTALGILGVTVIHTTIGGGLDDMTSSDDFHLISWRNFFTLAAIAVGVLI
PVGLRYWFRQRVQDIEEQGGLMAEPIEDPYVDDPEDRILAVGPPGLGLAKKAGERLLLRRDDDESSLESFYDEDE
DIILEAGPLIPDKAGEERLLVDVGSSSSSSLDSVINLTPGATHPLARR*
Coding >AgabiH97|081460
ATGCCGCCCCCTCTGCTCGTCCTTGACCCTCACCTAGGAACCTCGCATCGAAACGATTCCATGTACACCCTCAAC
ACCGTGGCCGACGACGACGACTCCAGCTCTCGCCGCTCCTCCAACACTTCTCCTCTCCTCTCCTCCGACTCCCAG
TCTTATGGTACCACTCCAAACTCTCAGTCCCGACCCTCCTCGGGAAAGGTCATTCTCCATGCGACGCTTAAAATG
GCCTGTATCTTTCTCGTCAGCACGCTCCTACTGGGCGGCGTCCTCTGGATCGCACTCCCCACCCTTGACGACGCG
GACCGCCCACTGCTGCGGATACCCAAGTCCTTCTCGCAGCTTCAGGACCTGAACGGCTTGCTCAAGAAATACCGC
GACATCTATCCTTACAGGATCGTCGTTTGCTATGTTATCACCTACCTCTTTCTACAGGCATTTTCGTTGCCCGGA
TCGATGTACCTGTCCATCCTTGGTGGTGCTGTATGGGGCGTGACACGGGCTCTCCCTTTAACCTGTTGCTGCGTT
GCAACGGGAGCAACGCTTTGCTATCTCATTTCAGCGGCACTCGGACCTGCTCTTCTGACTATCCCAAAGTGGAAA
GCTGTGCTGGACAAGTGGGCTGATAAAATTCAAGCGAACAAGGAAAACATGATTTCGTTCCTCATCGTGCTTCGG
ATTGCACCTTTGCCTCCTCATTGGGTGGTCAATGTTTTATGTCCCCATGTCGGCATCGGCATTGTCCCATTTTGG
ATTAGCACAGCACTCGGCATTCTCGGAGTGACGGTGATACACACAACGATTGGTGGTGGATTGGACGACATGACG
AGCTCTGACGATTTCCATCTGATCAGCTGGCGGAATTTCTTCACTCTGGCAGCTATTGCTGTCGGGGTGTTAATA
CCTGTTGGGCTGCGGTATTGGTTTCGGCAGAGGGTCCAGGACATTGAAGAGCAAGGCGGACTGATGGCAGAACCG
ATAGAAGACCCGTATGTTGATGACCCAGAGGACAGAATTTTGGCGGTGGGTCCGCCCGGACTCGGGTTGGCCAAG
AAGGCGGGAGAAAGGTTATTACTGAGAAGAGATGATGACGAGAGTAGTCTAGAGAGCTTCTATGACGAGGACGAG
GACATCATTTTGGAAGCTGGACCCCTGATACCCGACAAGGCGGGAGAGGAGCGGTTGCTTGTGGACGTGGGGAGT
TCGAGTAGTTCGAGCTTGGACTCGGTGATCAATCTGACACCTGGGGCGACGCATCCTCTCGCTCGCCGATGA
Transcript >AgabiH97|081460
ATGCCGCCCCCTCTGCTCGTCCTTGACCCTCACCTAGGAACCTCGCATCGAAACGATTCCATGTACACCCTCAAC
ACCGTGGCCGACGACGACGACTCCAGCTCTCGCCGCTCCTCCAACACTTCTCCTCTCCTCTCCTCCGACTCCCAG
TCTTATGGTACCACTCCAAACTCTCAGTCCCGACCCTCCTCGGGAAAGGTCATTCTCCATGCGACGCTTAAAATG
GCCTGTATCTTTCTCGTCAGCACGCTCCTACTGGGCGGCGTCCTCTGGATCGCACTCCCCACCCTTGACGACGCG
GACCGCCCACTGCTGCGGATACCCAAGTCCTTCTCGCAGCTTCAGGACCTGAACGGCTTGCTCAAGAAATACCGC
GACATCTATCCTTACAGGATCGTCGTTTGCTATGTTATCACCTACCTCTTTCTACAGGCATTTTCGTTGCCCGGA
TCGATGTACCTGTCCATCCTTGGTGGTGCTGTATGGGGCGTGACACGGGCTCTCCCTTTAACCTGTTGCTGCGTT
GCAACGGGAGCAACGCTTTGCTATCTCATTTCAGCGGCACTCGGACCTGCTCTTCTGACTATCCCAAAGTGGAAA
GCTGTGCTGGACAAGTGGGCTGATAAAATTCAAGCGAACAAGGAAAACATGATTTCGTTCCTCATCGTGCTTCGG
ATTGCACCTTTGCCTCCTCATTGGGTGGTCAATGTTTTATGTCCCCATGTCGGCATCGGCATTGTCCCATTTTGG
ATTAGCACAGCACTCGGCATTCTCGGAGTGACGGTGATACACACAACGATTGGTGGTGGATTGGACGACATGACG
AGCTCTGACGATTTCCATCTGATCAGCTGGCGGAATTTCTTCACTCTGGCAGCTATTGCTGTCGGGGTGTTAATA
CCTGTTGGGCTGCGGTATTGGTTTCGGCAGAGGGTCCAGGACATTGAAGAGCAAGGCGGACTGATGGCAGAACCG
ATAGAAGACCCGTATGTTGATGACCCAGAGGACAGAATTTTGGCGGTGGGTCCGCCCGGACTCGGGTTGGCCAAG
AAGGCGGGAGAAAGGTTATTACTGAGAAGAGATGATGACGAGAGTAGTCTAGAGAGCTTCTATGACGAGGACGAG
GACATCATTTTGGAAGCTGGACCCCTGATACCCGACAAGGCGGGAGAGGAGCGGTTGCTTGTGGACGTGGGGAGT
TCGAGTAGTTCGAGCTTGGACTCGGTGATCAATCTGACACCTGGGGCGACGCATCCTCTCGCTCGCCGATGA
Gene >AgabiH97|081460
ATGCCGCCCCCTCTGCTCGTCCTTGACCCTCACCTAGGAACCTCGCATCGAAACGATTCCATGTACACCCTCAAC
ACCGTGGCCGACGACGACGACTCCAGCTCTCGCCGCTCCTCCAACACTTCTCCTCTCCTCTCCTCCGACTCCCAG
TCTTATGGTACCACTCCAAACTCTCAGTCCCGACCCTCCTCGGGAAAGGTCATTCTCCATGCGACGCTTAAAATG
GCCTGTATCTTTCTCGTCAGCACGCTCCTACTGGGCGGCGTCCTCTGGATCGCACTCCCCACCCTTGACGAGTGA
GTTCATGCAATGCTCCGTCTCTTATCCCGTTTTTCTCACGATATTGTCAGCGCGGACCGCCCACTGCTGCGGATA
CCCAAGTCCTTCTCGCAGCTTCAGGACCTGAACGGCTTGCTCAAGAAATACCGCGACATCTATCCTTACAGGATC
GTCGTTTGCTATGTTATCACCTACCTCTTGTTCGTCCTTTGTCCATCATCTCACGAGGCCCTACTCCTGATGACT
TTTGATGTTTACAGTCTACAGGCATTTTCGTTGCCCGGATCGATGTACCTGTCCATCCTTGGTGGTGCTGTATGG
GGCGTGACACGGGCTCTCCCTTTAACCTGTTGCTGCGTTGCAACGGGAGCAACGCTTTGCTATCTCATTTCAGCG
GCACTCGGACCTGCTCTTCTGACTATCCCAAAGTGGAAAGCTGTGCTGGACAAGTGGGCTGATAAAATTCAAGCG
AACAAGGAAAACATGATTTCGTTCCTCATCGTGCTTCGGATTGCACCTTTGCCTCCTCATTGGGTGGTCAATGTT
TTATGTCCCCATGTCGGCATCGGCATTGTCCCATTTTGGATTAGCACAGCACTCGGCATTCTCGGAGTGACGGTG
ATACACACAACGATTGGTGGTGGATTGGACGACATGACGAGCTCTGACGATTTCCATCTGATCAGCTGGCGGAAT
TTCTTCACTCTGGCAGCTATTGCTGTCGGGGTGTTAATACCTGTTGGGCTGCGGTATTGGTTTCGGCAGAGGGTC
CAGGACATTGAAGAGCAAGGCGGACTGATGGCAGAACCGATAGAAGACCCGTATGTTGATGACCCAGAGGACAGA
ATTTTGGCGGTGGGTCCGCCCGGACTCGGGTTGGCCAAGAAGGCGGGAGAAAGGTTATTACTGAGAAGAGATGAT
GACGAGAGTAGTCTAGAGAGCTTCTATGACGAGGACGAGGACATCATTTTGGAAGCTGGACCCCTGATACCCGAC
AAGGCGGGAGAGGAGCGGTTGCTTGTGGACGTGGGGAGTTCGAGTAGTTCGAGCTTGGACTCGGTGATCAATCTG
ACACCTGGGGCGACGCATCCTCTCGCTCGCCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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