© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|081160 |
| Gene name | |
| Location | scaffold_5:791230..792287 |
| Strand | - |
| Gene length (bp) | 1057 |
| Transcript length (bp) | 870 |
| Coding sequence length (bp) | 870 |
| Protein length (aa) | 290 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 1.9E-22 | 4 | 179 |
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 1.9E-19 | 4 | 170 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 4.4E-10 | 4 | 125 |
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 1.6E-09 | 1 | 175 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 3.5E-05 | 3 | 119 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q57664|GALE_METJA | Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | 3 | 281 | 1.0E-10 |
| sp|O66256|TLL_AGGAC | dTDP-6-deoxy-L-talose 4-dehydrogenase (NAD(+)) OS=Aggregatibacter actinomycetemcomitans GN=tll PE=1 SV=1 | 1 | 180 | 2.0E-10 |
| sp|P39858|CAPI_STAAU | Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1 | 1 | 183 | 5.0E-10 |
| sp|Q9C7W7|UGE4_ARATH | UDP-glucose 4-epimerase 4 OS=Arabidopsis thaliana GN=UGE4 PE=1 SV=1 | 2 | 195 | 7.0E-10 |
| sp|P55180|GALE_BACSU | UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1 | 1 | 158 | 2.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q57664|GALE_METJA | Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | 3 | 281 | 1.0E-10 |
| sp|O66256|TLL_AGGAC | dTDP-6-deoxy-L-talose 4-dehydrogenase (NAD(+)) OS=Aggregatibacter actinomycetemcomitans GN=tll PE=1 SV=1 | 1 | 180 | 2.0E-10 |
| sp|P39858|CAPI_STAAU | Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1 | 1 | 183 | 5.0E-10 |
| sp|Q9C7W7|UGE4_ARATH | UDP-glucose 4-epimerase 4 OS=Arabidopsis thaliana GN=UGE4 PE=1 SV=1 | 2 | 195 | 7.0E-10 |
| sp|P55180|GALE_BACSU | UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1 | 1 | 158 | 2.0E-09 |
| sp|Q9SN58|UGE5_ARATH | UDP-glucose 4-epimerase 5 OS=Arabidopsis thaliana GN=UGE5 PE=1 SV=3 | 2 | 177 | 4.0E-09 |
| sp|Q8LNZ3|UGE1_ORYSJ | UDP-glucose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UGE-1 PE=2 SV=1 | 3 | 177 | 6.0E-09 |
| sp|Q6ZDJ7|UGE2_ORYSJ | UDP-glucose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UGE-2 PE=2 SV=1 | 3 | 177 | 1.0E-08 |
| sp|Q9T0A7|UGE2_ARATH | UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=UGE2 PE=1 SV=1 | 2 | 177 | 1.0E-08 |
| sp|O65781|GALE2_CYATE | UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1 | 3 | 177 | 5.0E-08 |
| sp|Q553X7|GALE_DICDI | UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1 | 3 | 225 | 1.0E-07 |
| sp|O06485|YFNG_BACSU | Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis (strain 168) GN=yfnG PE=3 SV=2 | 2 | 168 | 5.0E-07 |
| sp|Q59083|EXOB_AZOBR | UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1 | 3 | 158 | 1.0E-06 |
| sp|A8Y0L5|GMD1_CAEBR | GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis briggsae GN=bre-1 PE=3 SV=2 | 4 | 155 | 2.0E-06 |
| sp|Q43070|GALE1_PEA | UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1 | 3 | 177 | 3.0E-06 |
| sp|B0M3E8|UGE1_PEA | Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 OS=Pisum sativum GN=UGE1 PE=1 SV=2 | 3 | 177 | 3.0E-06 |
| sp|P9WN67|GALE_MYCTU | UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=galE1 PE=1 SV=1 | 1 | 168 | 4.0E-06 |
| sp|P9WN66|GALE_MYCTO | UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=galE1 PE=3 SV=1 | 1 | 168 | 4.0E-06 |
| sp|Q05026|GALE_NEIGO | UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1 | 1 | 177 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0006629 | lipid metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|081160 MNLLITGCNGSVGKRIVRLALNRGYIVTGVDFTTLSEELKELIEHKKDNFTYHQIDLGDYDCALEILRTSECQAV IHLAAVRDPKDYKVHTHNSNVVLSWNILRACAELGITRIAQASSVNVVKMVYSVQADFKYFPIDEDHPREPDEPY GLSKLICELQADTITRRYPTLRIASLRLSWSLPRKDYAWGRQAQDAAKDLWGYVYEDSVADAFLLSITCDTTKWP SKHEAFLVAAPEINRDLDSGELKKSFYPDVPVKEGFEIKGRQGFFDCRKAERLLGWVHRDNMPE* |
| Coding | >AgabiH97|081160 ATGAACCTACTCATAACAGGCTGCAACGGCAGCGTAGGCAAGCGTATAGTCCGTCTCGCCCTCAACCGAGGTTAC ATCGTGACTGGAGTCGATTTCACCACTCTATCAGAAGAACTCAAAGAGCTCATCGAACACAAAAAAGATAATTTC ACATATCATCAAATCGATCTTGGAGACTATGATTGTGCTCTGGAAATCCTTCGAACTTCGGAATGTCAAGCCGTT ATCCATTTGGCGGCAGTGCGAGACCCGAAAGATTATAAAGTGCACACTCACAATAGTAATGTCGTTTTATCGTGG AATATTTTAAGGGCTTGTGCAGAACTGGGTATAACACGAATCGCACAAGCCTCCTCTGTCAATGTCGTAAAGATG GTCTACAGCGTCCAAGCCGACTTTAAATATTTCCCAATCGACGAAGACCACCCACGCGAACCCGATGAACCCTAT GGATTATCCAAACTAATATGTGAACTGCAAGCTGACACCATAACTCGTCGTTATCCTACTCTCCGCATCGCAAGC CTTCGCTTGTCTTGGTCTCTTCCTCGTAAGGACTATGCTTGGGGGCGACAAGCTCAGGACGCAGCGAAAGACCTC TGGGGATATGTTTATGAAGATTCTGTCGCTGACGCATTTTTGTTGTCCATCACATGTGATACAACCAAATGGCCC TCCAAACATGAAGCATTCCTTGTGGCTGCACCCGAAATTAACAGAGACCTCGATAGTGGCGAGTTGAAGAAGTCA TTCTACCCTGATGTGCCAGTAAAAGAGGGGTTTGAGATTAAGGGCCGTCAAGGGTTCTTTGATTGTAGAAAGGCG GAGAGGTTGTTAGGATGGGTTCATAGGGACAATATGCCCGAATGA |
| Transcript | >AgabiH97|081160 ATGAACCTACTCATAACAGGCTGCAACGGCAGCGTAGGCAAGCGTATAGTCCGTCTCGCCCTCAACCGAGGTTAC ATCGTGACTGGAGTCGATTTCACCACTCTATCAGAAGAACTCAAAGAGCTCATCGAACACAAAAAAGATAATTTC ACATATCATCAAATCGATCTTGGAGACTATGATTGTGCTCTGGAAATCCTTCGAACTTCGGAATGTCAAGCCGTT ATCCATTTGGCGGCAGTGCGAGACCCGAAAGATTATAAAGTGCACACTCACAATAGTAATGTCGTTTTATCGTGG AATATTTTAAGGGCTTGTGCAGAACTGGGTATAACACGAATCGCACAAGCCTCCTCTGTCAATGTCGTAAAGATG GTCTACAGCGTCCAAGCCGACTTTAAATATTTCCCAATCGACGAAGACCACCCACGCGAACCCGATGAACCCTAT GGATTATCCAAACTAATATGTGAACTGCAAGCTGACACCATAACTCGTCGTTATCCTACTCTCCGCATCGCAAGC CTTCGCTTGTCTTGGTCTCTTCCTCGTAAGGACTATGCTTGGGGGCGACAAGCTCAGGACGCAGCGAAAGACCTC TGGGGATATGTTTATGAAGATTCTGTCGCTGACGCATTTTTGTTGTCCATCACATGTGATACAACCAAATGGCCC TCCAAACATGAAGCATTCCTTGTGGCTGCACCCGAAATTAACAGAGACCTCGATAGTGGCGAGTTGAAGAAGTCA TTCTACCCTGATGTGCCAGTAAAAGAGGGGTTTGAGATTAAGGGCCGTCAAGGGTTCTTTGATTGTAGAAAGGCG GAGAGGTTGTTAGGATGGGTTCATAGGGACAATATGCCCGAATGA |
| Gene | >AgabiH97|081160 ATGAACCTACTCATAACAGGCTGCAACGGCAGCGTAGGCAAGCGTATAGTCCGTCTCGCCCTCAACCGAGGTTAC ATCGTGACTGGAGTCGATTTCACCACTCTATCAGAAGAACTCAAAGAGCTCATCGAACACAAAAAAGATAATTTC ACATATCATCAAATCGATCTTGGAGACTATGATTGTGCTCTGGAAATCCTTCGAACTTCGGAATGTCAAGCCGTT ATCCATTTGGCGGCAGTGCGAGACCCGAAAGATTATAAAGTGCACACTCACAATAGGTTCGATTCACAAAAAGTT CTTTTGTCAATGAACTCAGGATGTTACATAGTAATGTCGTTTTATCGTGGAATATTTTAAGGGCTTGTGCAGAAG TGCGGTTACAATTTCTCTCCAGATTAACTTACTATTGACGGGTTTCACCTTGAAATGATGAATATAATAGCTGGG TATAACACGAATCGCACAAGCCTCCTCTGTCAATGTCGTAAAGATGGTCTACAGCGTCCAAGCCGACTTTAAATA TTTCCCAATCGACGAAGACCACCCACGCGAACCCGATGAACCCTATGGATTATCCAAACTGTAAGTCACACCGCA CACACGTACTCTCCCCCGTACTGCACTCTTGACATGTCAAAACATCCTTAGAATATGTGAACTGCAAGCTGACAC CATAACTCGTCGTTATCCTACTCTCCGCATCGCAAGCCTTCGCTTGTCTTGGTCTCTTCCTCGTAAGGACTATGC TTGGGGGCGACAAGCTCAGGACGCAGCGAAAGACCTCTGGGGATATGTTTATGAAGATTCTGTCGCTGACGCATT TTTGTTGTCCATCACATGTGATACAACCAAATGGCCCTCCAAACATGAAGCATTCCTTGTGGCTGCACCCGAAAT TAACAGAGACCTCGATAGTGGCGAGTTGAAGAAGTCATTCTACCCTGATGTGCCAGTAAAAGAGGGGTTTGAGAT TAAGGGCCGTCAAGGGTTCTTTGATTGTAGAAAGGCGGAGAGGTTGTTAGGATGGGTTCATAGGGACAATATGCC CGAATGA |