© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|081100 |
| Gene name | |
| Location | scaffold_5:778573..781267 |
| Strand | + |
| Gene length (bp) | 2694 |
| Transcript length (bp) | 1446 |
| Coding sequence length (bp) | 1446 |
| Protein length (aa) | 482 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 6.0E-20 | 23 | 218 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.7E-16 | 259 | 445 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.4E-17 | 57 | 388 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94342|YHM9_SCHPO | Probable metabolite transport protein C1271.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.09 PE=3 SV=1 | 19 | 463 | 1.0E-122 |
| sp|P25346|GIT1_YEAST | Probable metabolite transport protein GIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIT1 PE=1 SV=1 | 6 | 476 | 1.0E-70 |
| sp|Q9ZWT3|PHT16_ARATH | Probable inorganic phosphate transporter 1-6 OS=Arabidopsis thaliana GN=PHT1-6 PE=1 SV=1 | 6 | 452 | 7.0E-26 |
| sp|Q8GYF4|PHT15_ARATH | Probable inorganic phosphate transporter 1-5 OS=Arabidopsis thaliana GN=PHT1-5 PE=2 SV=2 | 6 | 456 | 2.0E-24 |
| sp|Q8H6H2|PHT14_ORYSJ | Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. japonica GN=PHT1-4 PE=2 SV=1 | 6 | 392 | 5.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94342|YHM9_SCHPO | Probable metabolite transport protein C1271.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.09 PE=3 SV=1 | 19 | 463 | 1.0E-122 |
| sp|P25346|GIT1_YEAST | Probable metabolite transport protein GIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIT1 PE=1 SV=1 | 6 | 476 | 1.0E-70 |
| sp|Q9ZWT3|PHT16_ARATH | Probable inorganic phosphate transporter 1-6 OS=Arabidopsis thaliana GN=PHT1-6 PE=1 SV=1 | 6 | 452 | 7.0E-26 |
| sp|Q8GYF4|PHT15_ARATH | Probable inorganic phosphate transporter 1-5 OS=Arabidopsis thaliana GN=PHT1-5 PE=2 SV=2 | 6 | 456 | 2.0E-24 |
| sp|Q8H6H2|PHT14_ORYSJ | Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. japonica GN=PHT1-4 PE=2 SV=1 | 6 | 392 | 5.0E-24 |
| sp|Q01MW8|PHT14_ORYSI | Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. indica GN=PHT1-4 PE=2 SV=2 | 6 | 392 | 5.0E-24 |
| sp|Q7XRH8|PT113_ORYSJ | Putative inorganic phosphate transporter 1-13 OS=Oryza sativa subsp. japonica GN=PHT1-13 PE=3 SV=2 | 6 | 392 | 7.0E-24 |
| sp|Q8H6H0|PHT16_ORYSJ | Inorganic phosphate transporter 1-6 OS=Oryza sativa subsp. japonica GN=PHT1-6 PE=1 SV=1 | 6 | 432 | 2.0E-23 |
| sp|O48639|PHT13_ARATH | Probable inorganic phosphate transporter 1-3 OS=Arabidopsis thaliana GN=PHT1-3 PE=2 SV=1 | 6 | 392 | 2.0E-23 |
| sp|Q9SYQ1|PHT18_ARATH | Probable inorganic phosphate transporter 1-8 OS=Arabidopsis thaliana GN=PHT1-8 PE=2 SV=2 | 15 | 473 | 4.0E-23 |
| sp|Q9S735|PHT19_ARATH | Probable inorganic phosphate transporter 1-9 OS=Arabidopsis thaliana GN=PHT1-9 PE=2 SV=1 | 15 | 444 | 5.0E-23 |
| sp|Q94DB8|PT111_ORYSJ | Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1 | 6 | 390 | 2.0E-22 |
| sp|Q7XDZ7|PHT13_ORYSJ | Probable inorganic phosphate transporter 1-3 OS=Oryza sativa subsp. japonica GN=PHT1-3 PE=2 SV=1 | 15 | 392 | 4.0E-22 |
| sp|Q7X7V2|PHT15_ORYSJ | Probable inorganic phosphate transporter 1-5 OS=Oryza sativa subsp. japonica GN=PHT1-5 PE=2 SV=2 | 6 | 467 | 8.0E-22 |
| sp|Q8GSD9|PHT12_ORYSJ | Inorganic phosphate transporter 1-2 OS=Oryza sativa subsp. japonica GN=PTH1-2 PE=2 SV=1 | 15 | 392 | 1.0E-21 |
| sp|Q69T94|PT110_ORYSJ | Probable inorganic phosphate transporter 1-10 OS=Oryza sativa subsp. japonica GN=PHT1-10 PE=2 SV=1 | 15 | 471 | 1.0E-21 |
| sp|Q8VYM2|PHT11_ARATH | Inorganic phosphate transporter 1-1 OS=Arabidopsis thaliana GN=PHT1-1 PE=1 SV=2 | 6 | 392 | 1.0E-21 |
| sp|Q8H6G9|PHT17_ORYSJ | Probable inorganic phosphate transporter 1-7 OS=Oryza sativa subsp. japonica GN=PHT1-7 PE=2 SV=1 | 6 | 444 | 1.0E-20 |
| sp|Q8H074|PT112_ORYSJ | Probable inorganic phosphate transporter 1-12 OS=Oryza sativa subsp. japonica GN=PHT1-12 PE=2 SV=1 | 6 | 392 | 1.0E-20 |
| sp|Q8H6G8|PHT18_ORYSJ | Probable inorganic phosphate transporter 1-8 OS=Oryza sativa subsp. japonica GN=PHT1-8 PE=2 SV=1 | 6 | 370 | 4.0E-19 |
| sp|Q8H6G7|PHT19_ORYSJ | Probable inorganic phosphate transporter 1-9 OS=Oryza sativa subsp. japonica GN=PHT1-9 PE=2 SV=2 | 15 | 392 | 1.0E-18 |
| sp|Q96303|PHT14_ARATH | Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1 | 6 | 392 | 2.0E-18 |
| sp|Q8H6H4|PHT11_ORYSJ | Inorganic phosphate transporter 1-1 OS=Oryza sativa subsp. japonica GN=PHT1-1 PE=2 SV=1 | 15 | 370 | 2.0E-18 |
| sp|P31679|YAAU_ECOLI | Putative metabolite transport protein YaaU OS=Escherichia coli (strain K12) GN=yaaU PE=3 SV=2 | 23 | 429 | 1.0E-17 |
| sp|Q494P0|PHT17_ARATH | Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2 | 6 | 392 | 7.0E-17 |
| sp|Q7RVX9|PHO5_NEUCR | Repressible high-affinity phosphate permease OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pho-5 PE=1 SV=2 | 12 | 471 | 8.0E-16 |
| sp|Q96243|PHT12_ARATH | Probable inorganic phosphate transporter 1-2 OS=Arabidopsis thaliana GN=PHT1-2 PE=2 SV=2 | 6 | 370 | 1.0E-15 |
| sp|Q09852|YAEC_SCHPO | Putative inorganic phosphate transporter C23D3.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23D3.12 PE=1 SV=1 | 10 | 444 | 8.0E-15 |
| sp|Q9Y7Q9|YCX2_SCHPO | Probable metabolite transporter C2H8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC2H8.02 PE=1 SV=1 | 10 | 229 | 1.0E-14 |
| sp|P25297|PHO84_YEAST | Inorganic phosphate transporter PHO84 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHO84 PE=1 SV=2 | 64 | 475 | 2.0E-14 |
| sp|Q9P6J9|YHD1_SCHPO | Putative inorganic phosphate transporter C1683.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.01 PE=3 SV=1 | 10 | 223 | 4.0E-14 |
| sp|O42885|YBN1_SCHPO | Putative inorganic phosphate transporter C8E4.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC8E4.01c PE=1 SV=2 | 10 | 222 | 3.0E-12 |
| sp|Q9P6J9|YHD1_SCHPO | Putative inorganic phosphate transporter C1683.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.01 PE=3 SV=1 | 237 | 443 | 3.0E-09 |
| sp|O42885|YBN1_SCHPO | Putative inorganic phosphate transporter C8E4.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC8E4.01c PE=1 SV=2 | 236 | 421 | 3.0E-09 |
| sp|P39352|YJHB_ECOLI | Putative metabolite transport protein YjhB OS=Escherichia coli (strain K12) GN=yjhB PE=1 SV=2 | 41 | 315 | 4.0E-09 |
| sp|O34691|NAIP_BACSU | Putative niacin/nicotinamide transporter NaiP OS=Bacillus subtilis (strain 168) GN=naiP PE=1 SV=1 | 4 | 388 | 6.0E-08 |
| sp|C0SPB2|YWTG_BACSU | Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | 17 | 400 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 54 | 76 | 22 |
| 3 | 83 | 105 | 22 |
| 4 | 115 | 137 | 22 |
| 5 | 157 | 179 | 22 |
| 6 | 189 | 211 | 22 |
| 7 | 237 | 259 | 22 |
| 8 | 279 | 301 | 22 |
| 9 | 308 | 328 | 20 |
| 10 | 338 | 360 | 22 |
| 11 | 373 | 392 | 19 |
| 12 | 412 | 434 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 178.73 | 101.10 | 256.36 |
| Initials | Initials knots | 122.17 | 72.77 | 171.56 |
| Pileal_Stipeal_center | Stage I stipe center | 43.05 | 25.08 | 61.03 |
| Pileal_Stipeal_shell | Stage I stipe shell | 57.03 | 33.74 | 80.32 |
| DIF_stipe_center | Stage II stipe center | 25.47 | 14.28 | 36.67 |
| DIF_stipe_shell | Stage II stipe shell | 31.99 | 18.33 | 45.64 |
| DIF_stipe_skin | Stage II stipe skin | 45.80 | 26.99 | 64.62 |
| DIF_cap_skin | Stage II cap skin | 67.83 | 39.94 | 95.73 |
| DIF_cap_tissue | Stage II cap tissue | 52.64 | 30.38 | 74.89 |
| DIF_gill_tissue | Stage II gill tissue | 40.06 | 23.00 | 57.13 |
| YFB_stipe_center | Young fruiting body stipe center | 45.64 | 27.00 | 64.28 |
| YFB_stipe_shell | Young fruiting body stipe shell | 48.50 | 28.59 | 68.41 |
| YFB_stipe_skin | Young fruiting body stipe skin | 63.27 | 37.92 | 88.61 |
| YFB_cap_skin | Young fruiting body cap skin | 149.31 | 88.20 | 210.43 |
| YFB_cap_tissue | Young fruiting body cap tissue | 50.93 | 30.21 | 71.65 |
| YFB_gill_tissue | Young fruiting body gill tissue | 160.43 | 82.22 | 238.64 |
| YFB_veil | Young fruiting body veil | 83.10 | 49.90 | 116.31 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.661205 | no |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.840453 | no |
| Casing | YFB_veil | 0.004160 | yes |
| Casing | Initials | 0.226261 | no |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.000613 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.767338 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.625975 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.110863 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.000613 | yes |
| DIF_gill_tissue | YFB_cap_tissue | 0.508742 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_veil | 0.005302 | yes |
| YFB_stipe_center | YFB_stipe_shell | 0.906251 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.288288 | no |
| YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.811213 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_center | YFB_veil | 0.018624 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.423173 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.927730 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_veil | 0.044418 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.546198 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.001140 | yes |
| YFB_stipe_skin | YFB_veil | 0.405210 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.000613 | yes |
| YFB_cap_skin | YFB_gill_tissue | 0.895893 | no |
| YFB_cap_skin | YFB_veil | 0.022631 | yes |
| YFB_cap_tissue | YFB_gill_tissue | 0.000613 | yes |
| YFB_cap_tissue | YFB_veil | 0.071041 | no |
| YFB_gill_tissue | YFB_veil | 0.023415 | yes |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.009446 | yes |
| Initials | YFB_cap_skin | 0.590463 | no |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.472029 | no |
| Initials | YFB_veil | 0.191927 | no |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.002525 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.000613 | yes |
| Initials | DIF_stipe_skin | 0.000613 | yes |
| Initials | DIF_cap_skin | 0.022892 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.891245 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.911562 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.792282 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.197823 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.679997 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_veil | 0.013782 | yes |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.404363 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.066022 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.383392 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.904926 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.116868 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.602983 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.267865 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.533876 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.686202 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.818354 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.801465 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_veil | 0.201633 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.001625 | yes |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.033674 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.545769 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.658878 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.872557 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.136175 | no |
| DIF_stipe_center | YFB_stipe_center | 0.032266 | yes |
| DIF_stipe_center | YFB_stipe_shell | 0.019442 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.000613 | yes |
| DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.009773 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_center | YFB_veil | 0.000613 | yes |
| DIF_stipe_center | DIF_stipe_shell | 0.555043 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.034837 | yes |
| DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.005671 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.561022 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.255156 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.163833 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.006387 | yes |
| DIF_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.107449 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_shell | YFB_veil | 0.000613 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.251647 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.003365 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.078769 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.762268 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.994405 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.913436 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.292699 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_skin | YFB_cap_tissue | 0.819704 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_skin | YFB_veil | 0.023153 | yes |
| DIF_stipe_skin | DIF_cap_skin | 0.176313 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.747129 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.051932 | no |
| DIF_cap_skin | YFB_stipe_center | 0.174503 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.280261 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.889900 | no |
| DIF_cap_skin | YFB_cap_skin | 0.001140 | yes |
| DIF_cap_skin | YFB_cap_tissue | 0.377348 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.002525 | yes |
| DIF_cap_skin | YFB_veil | 0.577425 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.464638 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.437516 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.733131 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.867432 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.626557 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.000613 | yes |
| DIF_cap_tissue | YFB_cap_tissue | 0.952892 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.000613 | yes |
| DIF_cap_tissue | YFB_veil | 0.100566 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|081100 MSPPLKERLRKVSLIFACGTALFSDGYANGVLSDVNTLLNRIYGADRIDANGYGTTVRSLAFAGTVVGMLVFGYL SDKIGRKFGMMVASGIVALFSGLSAASSGAHGSLDGMLAMLSAMRFLLGIGIGAEYPCGSVSASEQSEQDGIHKR AQHRWFALATNSMIDFGFVISAFVPLVLFWIFGDDHLRAVWRLSLGLGVVPALLVFIWRLNMEEPERFRKDSMKH VKIPYGLVLKKYWPSLVTISFIWFLYDFIAYPFGIYSSTILDNVTGGTDSLTVIFGWNVVINLFYIPGTLAGAFA VDYLGPKYCLITGLVLQGTIGFIMSGLYKRLTDHIAAFVVVYGIFLALGEFGAGNCVGLLASKSSPTAVRGQFYG VAAAIGKIGAFVGTWAFPPMIDAFGGAKSLRGNTGPFWVGSGMALLSAIVAFLFLKPVNADGMNKMDREFREYLE ENGFDTSQMGLPDSESSTSSSIEHEKYEEKV* |
| Coding | >AgabiH97|081100 ATGTCGCCTCCGTTGAAGGAACGCTTGCGGAAAGTTTCGCTTATCTTTGCTTGTGGAACGGCATTGTTCTCTGAT GGTTATGCCAATGGTGTTCTCTCCGACGTCAATACTCTGCTCAACCGCATCTACGGTGCTGATAGAATTGATGCG AACGGCTATGGTACGACTGTGCGGAGCTTGGCGTTTGCTGGAACAGTCGTTGGAATGCTCGTTTTCGGTTACCTG TCCGACAAGATCGGTAGAAAGTTCGGAATGATGGTTGCTTCTGGCATTGTGGCACTTTTCTCTGGCCTTTCAGCT GCATCATCAGGCGCTCATGGTAGTCTTGATGGGATGTTGGCCATGTTGAGTGCAATGCGTTTCCTTTTGGGGATT GGGATCGGTGCAGAATATCCTTGCGGTTCTGTATCCGCATCTGAACAATCTGAGCAAGACGGCATCCACAAACGT GCACAACATAGGTGGTTTGCTCTGGCGACAAACAGTATGATTGATTTTGGGTTTGTGATTTCTGCTTTTGTGCCT TTGGTTTTGTTCTGGATATTTGGTGATGACCATCTCCGCGCCGTCTGGCGTCTATCTTTGGGGCTCGGTGTTGTA CCTGCTTTATTGGTGTTCATCTGGCGACTTAACATGGAGGAACCCGAGCGCTTCAGGAAGGATTCGATGAAACAC GTGAAAATACCGTACGGATTGGTGTTAAAGAAATATTGGCCGTCGCTTGTAACTATTTCATTCATCTGGTTCCTT TACGACTTCATTGCATACCCTTTCGGCATCTACTCTTCGACGATCCTTGATAACGTGACGGGAGGCACTGATTCG CTGACTGTTATTTTTGGATGGAACGTCGTGATCAACTTGTTCTACATTCCAGGTACCTTGGCTGGTGCTTTCGCT GTTGATTACCTAGGTCCCAAGTATTGTCTGATTACCGGACTTGTCCTGCAAGGCACCATCGGCTTCATTATGAGT GGCCTTTATAAAAGATTGACGGATCACATCGCTGCATTTGTTGTCGTGTACGGTATCTTCCTAGCCCTTGGGGAG TTCGGTGCTGGAAATTGCGTGGGTCTCCTTGCAAGTAAATCTAGCCCCACCGCTGTCCGAGGCCAATTCTATGGT GTGGCTGCGGCAATTGGAAAAATCGGGGCTTTTGTTGGTACTTGGGCTTTCCCTCCTATGATCGACGCTTTTGGT GGAGCCAAATCCCTTAGGGGCAACACTGGTCCTTTCTGGGTTGGGAGTGGCATGGCCCTTCTGAGCGCTATTGTT GCTTTCCTGTTCTTGAAGCCGGTAAATGCGGATGGAATGAACAAGATGGATCGAGAGTTCCGTGAGTATCTGGAA GAGAATGGATTCGATACGTCGCAGATGGGCCTTCCGGACAGCGAAAGCTCTACTTCATCTTCGATTGAACATGAG AAGTACGAAGAAAAAGTGTAA |
| Transcript | >AgabiH97|081100 ATGTCGCCTCCGTTGAAGGAACGCTTGCGGAAAGTTTCGCTTATCTTTGCTTGTGGAACGGCATTGTTCTCTGAT GGTTATGCCAATGGTGTTCTCTCCGACGTCAATACTCTGCTCAACCGCATCTACGGTGCTGATAGAATTGATGCG AACGGCTATGGTACGACTGTGCGGAGCTTGGCGTTTGCTGGAACAGTCGTTGGAATGCTCGTTTTCGGTTACCTG TCCGACAAGATCGGTAGAAAGTTCGGAATGATGGTTGCTTCTGGCATTGTGGCACTTTTCTCTGGCCTTTCAGCT GCATCATCAGGCGCTCATGGTAGTCTTGATGGGATGTTGGCCATGTTGAGTGCAATGCGTTTCCTTTTGGGGATT GGGATCGGTGCAGAATATCCTTGCGGTTCTGTATCCGCATCTGAACAATCTGAGCAAGACGGCATCCACAAACGT GCACAACATAGGTGGTTTGCTCTGGCGACAAACAGTATGATTGATTTTGGGTTTGTGATTTCTGCTTTTGTGCCT TTGGTTTTGTTCTGGATATTTGGTGATGACCATCTCCGCGCCGTCTGGCGTCTATCTTTGGGGCTCGGTGTTGTA CCTGCTTTATTGGTGTTCATCTGGCGACTTAACATGGAGGAACCCGAGCGCTTCAGGAAGGATTCGATGAAACAC GTGAAAATACCGTACGGATTGGTGTTAAAGAAATATTGGCCGTCGCTTGTAACTATTTCATTCATCTGGTTCCTT TACGACTTCATTGCATACCCTTTCGGCATCTACTCTTCGACGATCCTTGATAACGTGACGGGAGGCACTGATTCG CTGACTGTTATTTTTGGATGGAACGTCGTGATCAACTTGTTCTACATTCCAGGTACCTTGGCTGGTGCTTTCGCT GTTGATTACCTAGGTCCCAAGTATTGTCTGATTACCGGACTTGTCCTGCAAGGCACCATCGGCTTCATTATGAGT GGCCTTTATAAAAGATTGACGGATCACATCGCTGCATTTGTTGTCGTGTACGGTATCTTCCTAGCCCTTGGGGAG TTCGGTGCTGGAAATTGCGTGGGTCTCCTTGCAAGTAAATCTAGCCCCACCGCTGTCCGAGGCCAATTCTATGGT GTGGCTGCGGCAATTGGAAAAATCGGGGCTTTTGTTGGTACTTGGGCTTTCCCTCCTATGATCGACGCTTTTGGT GGAGCCAAATCCCTTAGGGGCAACACTGGTCCTTTCTGGGTTGGGAGTGGCATGGCCCTTCTGAGCGCTATTGTT GCTTTCCTGTTCTTGAAGCCGGTAAATGCGGATGGAATGAACAAGATGGATCGAGAGTTCCGTGAGTATCTGGAA GAGAATGGATTCGATACGTCGCAGATGGGCCTTCCGGACAGCGAAAGCTCTACTTCATCTTCGATTGAACATGAG AAGTACGAAGAAAAAGTGTAA |
| Gene | >AgabiH97|081100 ATGTCGCCTCCGTTGAAGGAACGCTTGCGGAAAGTTTCGCTTATCTTTGCGTGAGTTTCACTAGATTCCATCCCT TCCTCCTCCTTGAACTTACGGCTCTCTGTAGTTGTGGAACGGCATTGTTCTCTGATGGTGAGCCCGTGGAGCCCT TCGCAGAAAGTTACATATGGTGACAGCGTTTGTGGAAAGGTTATGCCAATGGTGTTCTCTCCGACGGTGGGTCTC ATTCTCGTTTCATGAAGGCAGTCCTGATTACAGAATTTAGTCAATACTCGTAAGATGGAATTTCGTCTCTATAGA GGATCGCATTCACCTTCTCGATAGTGCTCAACCGCATCTACGGTGCTGATAGAATTGATGCGAACGGCTATGGTA CGACTGTGCGGAGCTTGGCGTTTGCTGGAACAGTCGTTGGAATGCTCGTTTTCGGTATGCTCATATCCCAGTTGC GGGGCATGCACTAACATTTCCTTGAAGGTTACCTGTCCGACAAGATCGGTAGAAAGTTCGGAATGGTGTGTTTTG TCATTGAATACTCAAATATTCCAGCCTCCCTATATGTTTCTACAGATGGTTGCTTCTGGCATTGTGGCACTTTTC TCTGGCCTTTCAGCTGCATCATCAGGCGCTCATGGTAGTCTTGATGGGATGTTGGCCATGTTGAGTGCAATGCGG TGAGTCCATTTCATGACCCACACAGCTGTCGGTGATTCTGAATACCGACTTAGTTTCCTTTTGGGGATTGGGATC GGTGCAGAATATCCTTGCGGTTCTGTATCCGCATCTGAACAATCTGAGCAAGACGGCATCCACAAACGTGCACAA CATAGGTGGTTTGCTCTGGCGACAAGTGAGAGACAGATTTTCTTGATATCCCACGTGCGCCGAACGTGACTCACC TTTTATTCGCTTCCCAGACAGTATGATTGATTTTGGGTTTGTGATTTCTGCTTTTGTGCCTTTGGTTTTGTTCTG GATGTGAGTGAAATTTTAATCCTATATCTTGCCCAGAAAATTGATATGGAACCTGCAATAGATTTGGTGATGACC ATCTCCGCGCCGTCTGGCGTCTATCTTTGGGGCTCGGTGTTGTACCTGCTTTATTGGTGTTCATCTGGCGACTTA ACATGGAGGAACCCGAGCGCTTCAGGAAGGATTCGATGAAACACGTGAAAATACCGTACGGATTGGTGTTAAAGA AATATTGGCCGTCGCTTGTAACTATTTCATTCATCTGGTGCGTATTCTGACTTCAATGTAATTTTGATTAACAAC GACCGATTGACTTGATTGATCAGGTTCCTTTACGACTTCATTGCGTAAGTGAGGCCAGACTAGGTTTTATGTGTT TGATAGCTGACTCAAAATCTGAAATAGATACCCTGTTTGTTGGATTTTCACTTTCGATCCCAATAATTTCAGCTA ACAAGATTTTTTCCCCATAGTTCGGCATCTACTCTTCGACGATCCTTGATAAGTGAGCTTTTTCTTATAATATCT TCGTTCTGAGGCTAATGAATGGTCGTTCAGCGTGACGGGAGGCACTGATTCGCTGACTGTTATTTTTGGATGGAA CGTCGTGATCAAGTATGTATTTCTTACGATACCCGGTTCATTGGTAATGACGAGTGCTTTTCACAGCTTGTTCTA CATTCCAGGTTTGTCGTGGTCTCTTCTACGAATTTAACACCTCACGCAATACATCGATAGGTACCTTGGCTGGTG CTTTCGCTGTTGATTACCTAGGTCCCAAGTATTGTCTGGTATGTTTTTGACTTTATCCGCCATGTCAGAAATAGT TAACCTGATGTTGATTCTAGATTACCGGACTTGTCCTGCAAGGCACCATCGGCTTCATTATGAGTGGCCTTTATA AAAGGTAAGGCAAATAGCTCTGCACACAAAGTAAGCTCTTGACCTGGTCAAACCAGATTGACGGATCACATCGCT GCATTTGTTGTATGTGCATCTAAAATTCCTTCCTTGACCCGTCTCACTTTATTTCGAAGGTCGTGTACGGTATCT TCCTAGCCCTTGGGGAGTTCGGTATGAATGTCATCTCTCCTATAACCTCCGCATAGCTCAGTCGTATTAAGGTGC TGGAAATTGCGTGGGTCTCCTTGCAAGTAAATCTAGCCCCACCGCTGTCCGAGGCCAATTCTATGGTGTGGCTGC GGCAATTGGAAAAATCGGGGCTTTTGTTGGTACTTGGGGTAAGTGATCAATATGTAGTTCCCTCCTCGATTGCTG ACAGCTGTATTTCTCTTCAGCTTTCCCTCCTATGATCGACGGTATGTTCGCACCGCTCAAAAGGTTGAGATTGAG ACTTACTCTGTGAACAGCTTTTGGTGGAGCCAAATCCCTTAGGGGCAACACTGGTCCTTTCTGGGTTGGGAGTGG TAAGTATTGTTGACAGCATCTGCTTTGGTTAAGTCTGACCAGCCCAAGGCATGGCCCTTCTGAGCGCTATTGTTG CTTTCCTGTTCTTGAAGCCGGTAAATGCGGATGGAATGAACAAGATGGATCGAGAGGTAAATACATGCAAAGCCT TCTTAACCTCGCTTATCGAACACTTTACAGTTCCGTGAGTATCTGGAAGAGAATGGATTCGATACGTCGCAGATG GGCCTTCCGGACAGCGAAAGCTCTACTTCATCTTCGATTGAACATGAGAAGTACGAAGAAAAAGTGTAA |