Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|080600
Gene name
Locationscaffold_5:638412..638759
Strand+
Gene length (bp)347
Transcript length (bp)240
Coding sequence length (bp)240
Protein length (aa) 80

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11160 Hva1_TUDOR Hypervirulence associated proteins TUDOR domain 1.5E-20 7 75

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|G2TRL4|PRL65_SCHPO Uncharacterized protein prl65 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prl65 PE=4 SV=1 1 75 6.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 64 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|080600
MVAYKAGDRVKYHAVGGRSSGTDTSTTTGEIVDVLTEPQPAGETGVTAKASEDEPRYLIRNDNTGKETAYKGTNI
LGKC*
Coding >AgabiH97|080600
ATGGTCGCATACAAGGCTGGAGATCGCGTCAAATATCACGCTGTTGGAGGAAGAAGCTCCGGCACCGACACTTCT
ACCACTACTGGTGAAATAGTCGACGTTCTCACTGAGCCCCAACCTGCTGGGGAAACCGGCGTGACCGCAAAGGCC
TCCGAAGATGAGCCGCGCTATCTCATTCGTAACGATAACACGGGCAAAGAGACTGCCTATAAGGGTACCAATATT
CTTGGAAAGTGCTGA
Transcript >AgabiH97|080600
ATGGTCGCATACAAGGCTGGAGATCGCGTCAAATATCACGCTGTTGGAGGAAGAAGCTCCGGCACCGACACTTCT
ACCACTACTGGTGAAATAGTCGACGTTCTCACTGAGCCCCAACCTGCTGGGGAAACCGGCGTGACCGCAAAGGCC
TCCGAAGATGAGCCGCGCTATCTCATTCGTAACGATAACACGGGCAAAGAGACTGCCTATAAGGGTACCAATATT
CTTGGAAAGTGCTGA
Gene >AgabiH97|080600
ATGGTCGCATACAAGGTGAGTAAACGCAGAGATTTTTTTTTCGCCTCGTCTCAACCGTCCATTCTCAAAGGCTGG
AGATCGCGTCAAATATCACGCTGTTGGAGGAAGAAGCTCCGGCACCGACACTTCTACCACTACTGGTGAAATAGT
CGACGTTCTCACTGAGCCCCAACCTGCTGGGGAAACCGGCGTGACCGCAAAGGTTTGTTTTCTTTCACATATTCG
ACTTTGAGCAGGATTTGATGATAATTCAGGCCTCCGAAGATGAGCCGCGCTATCTCATTCGTAACGATAACACGG
GCAAAGAGACTGCCTATAAGGGTACCAATATTCTTGGAAAGTGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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