Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|080500
Gene name
Locationscaffold_5:615251..616692
Strand-
Gene length (bp)1441
Transcript length (bp)1227
Coding sequence length (bp)1227
Protein length (aa) 409

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01328 Peroxidase_2 Peroxidase, family 2 2.3E-50 104 317

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|B9W4V6|APO1_AGRAE Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1 49 408 1.0E-152
sp|B9W4V8|APO1_COPRA Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2 84 316 6.0E-97
sp|Q00668|STCC_EMENI Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2 106 290 1.0E-17
sp|P04963|PRXC_LEPFU Chloroperoxidase OS=Leptoxyphium fumago GN=CPO PE=1 SV=3 100 254 5.0E-07

GO

GO Term Description Terminal node
GO:0004601 peroxidase activity Yes
GO:0003674 molecular_function No
GO:0016491 oxidoreductase activity No
GO:0016209 antioxidant activity No
GO:0003824 catalytic activity No
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 58 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 35.86 20.18 51.53
Initials Initials knots 44.92 26.20 63.64
Pileal_Stipeal_center Stage I stipe center 69.86 41.67 98.05
Pileal_Stipeal_shell Stage I stipe shell 68.02 40.53 95.51
DIF_stipe_center Stage II stipe center 76.52 45.80 107.23
DIF_stipe_shell Stage II stipe shell 61.49 36.51 86.47
DIF_stipe_skin Stage II stipe skin 50.78 29.72 71.84
DIF_cap_skin Stage II cap skin 63.59 37.84 89.34
DIF_cap_tissue Stage II cap tissue 49.87 29.19 70.55
DIF_gill_tissue Stage II gill tissue 60.75 35.95 85.55
YFB_stipe_center Young fruiting body stipe center 52.32 30.58 74.07
YFB_stipe_shell Young fruiting body stipe shell 49.58 29.04 70.12
YFB_stipe_skin Young fruiting body stipe skin 46.55 27.18 65.93
YFB_cap_skin Young fruiting body cap skin 49.77 29.13 70.41
YFB_cap_tissue Young fruiting body cap tissue 50.56 29.63 71.49
YFB_gill_tissue Young fruiting body gill tissue 92.59 53.88 131.30
YFB_veil Young fruiting body veil 60.30 34.29 86.31

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.063183 no
Casing YFB_stipe_center 0.246090 no
Casing YFB_stipe_shell 0.344759 no
Casing YFB_stipe_skin 0.479328 no
Casing YFB_cap_skin 0.329316 no
Casing YFB_cap_tissue 0.306438 no
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.079123 no
Casing Initials 0.555495 no
Casing Pileal_Stipeal_center 0.013186 yes
Casing Pileal_Stipeal_shell 0.018344 yes
Casing DIF_stipe_center 0.002951 yes
Casing DIF_stipe_shell 0.056958 no
Casing DIF_stipe_skin 0.297401 no
Casing DIF_cap_skin 0.042909 yes
Casing DIF_cap_tissue 0.330998 no
DIF_gill_tissue YFB_stipe_center 0.723416 no
DIF_gill_tissue YFB_stipe_shell 0.597870 no
DIF_gill_tissue YFB_stipe_skin 0.437591 no
DIF_gill_tissue YFB_cap_skin 0.597521 no
DIF_gill_tissue YFB_cap_tissue 0.643186 no
DIF_gill_tissue YFB_gill_tissue 0.147277 no
DIF_gill_tissue YFB_veil 0.988684 no
YFB_stipe_center YFB_stipe_shell 0.919996 no
YFB_stipe_center YFB_stipe_skin 0.801376 no
YFB_stipe_center YFB_cap_skin 0.926036 no
YFB_stipe_center YFB_cap_tissue 0.951666 no
YFB_stipe_center YFB_gill_tissue 0.034837 yes
YFB_stipe_center YFB_veil 0.751936 no
YFB_stipe_shell YFB_stipe_skin 0.905624 no
YFB_stipe_shell YFB_cap_skin 0.993937 no
YFB_stipe_shell YFB_cap_tissue 0.972063 no
YFB_stipe_shell YFB_gill_tissue 0.021846 yes
YFB_stipe_shell YFB_veil 0.622121 no
YFB_stipe_skin YFB_cap_skin 0.896477 no
YFB_stipe_skin YFB_cap_tissue 0.868224 no
YFB_stipe_skin YFB_gill_tissue 0.007782 yes
YFB_stipe_skin YFB_veil 0.473191 no
YFB_cap_skin YFB_cap_tissue 0.977900 no
YFB_cap_skin YFB_gill_tissue 0.022892 yes
YFB_cap_skin YFB_veil 0.633925 no
YFB_cap_tissue YFB_gill_tissue 0.028437 yes
YFB_cap_tissue YFB_veil 0.675756 no
YFB_gill_tissue YFB_veil 0.158092 no
Initials DIF_gill_tissue 0.356456 no
Initials YFB_stipe_center 0.721106 no
Initials YFB_stipe_shell 0.841810 no
Initials YFB_stipe_skin 0.949735 no
Initials YFB_cap_skin 0.830349 no
Initials YFB_cap_tissue 0.799092 no
Initials YFB_gill_tissue 0.005302 yes
Initials YFB_veil 0.395048 no
Initials Pileal_Stipeal_center 0.130677 no
Initials Pileal_Stipeal_shell 0.163299 no
Initials DIF_stipe_center 0.050706 no
Initials DIF_stipe_shell 0.338956 no
Initials DIF_stipe_skin 0.789105 no
Initials DIF_cap_skin 0.267165 no
Initials DIF_cap_tissue 0.825505 no
Pileal_Stipeal_center DIF_gill_tissue 0.743606 no
Pileal_Stipeal_center YFB_stipe_center 0.389156 no
Pileal_Stipeal_center YFB_stipe_shell 0.273347 no
Pileal_Stipeal_center YFB_stipe_skin 0.173970 no
Pileal_Stipeal_center YFB_cap_skin 0.275734 no
Pileal_Stipeal_center YFB_cap_tissue 0.316230 no
Pileal_Stipeal_center YFB_gill_tissue 0.400147 no
Pileal_Stipeal_center YFB_veil 0.737832 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.960307 no
Pileal_Stipeal_center DIF_stipe_center 0.848865 no
Pileal_Stipeal_center DIF_stipe_shell 0.774402 no
Pileal_Stipeal_center DIF_stipe_skin 0.328972 no
Pileal_Stipeal_center DIF_cap_skin 0.845884 no
Pileal_Stipeal_center DIF_cap_tissue 0.284249 no
Pileal_Stipeal_shell DIF_gill_tissue 0.801346 no
Pileal_Stipeal_shell YFB_stipe_center 0.452554 no
Pileal_Stipeal_shell YFB_stipe_shell 0.329136 no
Pileal_Stipeal_shell YFB_stipe_skin 0.215281 no
Pileal_Stipeal_shell YFB_cap_skin 0.328972 no
Pileal_Stipeal_shell YFB_cap_tissue 0.367909 no
Pileal_Stipeal_shell YFB_gill_tissue 0.339657 no
Pileal_Stipeal_shell YFB_veil 0.793873 no
Pileal_Stipeal_shell DIF_stipe_center 0.789600 no
Pileal_Stipeal_shell DIF_stipe_shell 0.830966 no
Pileal_Stipeal_shell DIF_stipe_skin 0.381485 no
Pileal_Stipeal_shell DIF_cap_skin 0.894834 no
Pileal_Stipeal_shell DIF_cap_tissue 0.337682 no
DIF_stipe_center DIF_gill_tissue 0.510283 no
DIF_stipe_center YFB_stipe_center 0.205425 no
DIF_stipe_center YFB_stipe_shell 0.128378 no
DIF_stipe_center YFB_stipe_skin 0.073043 no
DIF_stipe_center YFB_cap_skin 0.129827 no
DIF_stipe_center YFB_cap_tissue 0.158500 no
DIF_stipe_center YFB_gill_tissue 0.614483 no
DIF_stipe_center YFB_veil 0.511364 no
DIF_stipe_center DIF_stipe_shell 0.541657 no
DIF_stipe_center DIF_stipe_skin 0.165549 no
DIF_stipe_center DIF_cap_skin 0.626833 no
DIF_stipe_center DIF_cap_tissue 0.138282 no
DIF_stipe_shell DIF_gill_tissue 0.982208 no
DIF_stipe_shell YFB_stipe_center 0.699679 no
DIF_stipe_shell YFB_stipe_shell 0.574190 no
DIF_stipe_shell YFB_stipe_skin 0.420068 no
DIF_stipe_shell YFB_cap_skin 0.575547 no
DIF_stipe_shell YFB_cap_tissue 0.619061 no
DIF_stipe_shell YFB_gill_tissue 0.167365 no
DIF_stipe_shell YFB_veil 0.972240 no
DIF_stipe_shell DIF_stipe_skin 0.630037 no
DIF_stipe_shell DIF_cap_skin 0.952086 no
DIF_stipe_shell DIF_cap_tissue 0.583742 no
DIF_stipe_skin DIF_gill_tissue 0.654950 no
DIF_stipe_skin YFB_stipe_center 0.959660 no
DIF_stipe_skin YFB_stipe_shell 0.967560 no
DIF_stipe_skin YFB_stipe_skin 0.864259 no
DIF_stipe_skin YFB_cap_skin 0.972045 no
DIF_stipe_skin YFB_cap_tissue 0.993593 no
DIF_stipe_skin YFB_gill_tissue 0.026710 yes
DIF_stipe_skin YFB_veil 0.685154 no
DIF_stipe_skin DIF_cap_skin 0.546690 no
DIF_stipe_skin DIF_cap_tissue 0.974859 no
DIF_cap_skin DIF_gill_tissue 0.931642 no
DIF_cap_skin YFB_stipe_center 0.621622 no
DIF_cap_skin YFB_stipe_shell 0.492252 no
DIF_cap_skin YFB_stipe_skin 0.349136 no
DIF_cap_skin YFB_cap_skin 0.495432 no
DIF_cap_skin YFB_cap_tissue 0.536197 no
DIF_cap_skin YFB_gill_tissue 0.216874 no
DIF_cap_skin YFB_veil 0.922233 no
DIF_cap_skin DIF_cap_tissue 0.503004 no
DIF_cap_tissue DIF_gill_tissue 0.606904 no
DIF_cap_tissue YFB_stipe_center 0.932566 no
DIF_cap_tissue YFB_stipe_shell 0.990991 no
DIF_cap_tissue YFB_stipe_skin 0.896195 no
DIF_cap_tissue YFB_cap_skin 0.996420 no
DIF_cap_tissue YFB_cap_tissue 0.980154 no
DIF_cap_tissue YFB_gill_tissue 0.022631 yes
DIF_cap_tissue YFB_veil 0.640318 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|080500
MISSLDSLFKATPWFSNANIPPLLLKIPVALLPAKLLMNPFLKLAVLALVTAPLAGAFPSHRSLGGLSSEQLDRI
FPTLKVAPPEGPPPPQDDTSTRLVDDADHPFMPAGPNDMRGPCPGLNTLASHGYLPRNGIATPAQVINATMQGFN
MEFSLAKFVTYAAFLVDGNPITNLMSIGGKSDLTGEDPPDPATVGGLNTHAVFEGDASMTRADAFFGDNHSFNQT
LWDGFVDFSNRFGAGKYNLTVATELRIQRIQDSIATNPQFSFVSPRFITAYAESTFPINFFIDGRQQDGQLDLDA
AISFFRDMRYPSGFFRAPKPMGVEGIETIIAAHPIPAGANNGAVNTYTPDPHSGDFNSFCTVYTNFVNETIRGLY
PSPTGILKDSLNRNLDFLHDFVSGCPQIFPWGR*
Coding >AgabiH97|080500
ATGATTAGCTCGCTAGACAGCTTGTTTAAAGCTACGCCATGGTTCTCAAACGCAAACATCCCCCCGTTACTTCTC
AAGATCCCTGTGGCGCTTCTCCCTGCGAAACTATTGATGAATCCCTTTCTCAAACTTGCTGTGCTAGCCTTGGTA
ACTGCACCATTAGCAGGGGCCTTCCCGTCCCATCGCTCCCTTGGTGGCCTCTCTTCAGAACAATTGGATAGAATT
TTTCCAACGCTCAAGGTAGCTCCTCCGGAAGGTCCTCCGCCGCCTCAGGACGATACGTCGACCAGATTGGTTGAT
GACGCTGATCATCCATTTATGCCGGCGGGTCCGAATGACATGCGTGGGCCTTGCCCTGGACTCAATACCCTTGCA
TCCCACGGGTACCTGCCCCGGAATGGAATTGCAACTCCCGCTCAAGTCATCAATGCTACAATGCAAGGTTTCAAC
ATGGAGTTCTCCCTTGCAAAGTTTGTCACATACGCCGCATTCCTGGTAGATGGCAATCCCATTACCAACTTGATG
AGTATCGGAGGAAAAAGCGACCTCACTGGTGAAGACCCTCCCGACCCTGCAACGGTCGGTGGTTTGAACACACAC
GCTGTATTCGAAGGTGATGCCAGCATGACCCGGGCCGATGCGTTCTTTGGGGATAACCACAGCTTTAATCAAACA
TTGTGGGATGGGTTTGTCGACTTCAGTAACCGATTTGGTGCCGGGAAATACAACCTAACGGTGGCCACTGAACTT
CGGATCCAAAGAATCCAGGACTCAATCGCAACAAACCCACAATTCTCATTCGTTTCTCCCCGTTTCATCACAGCC
TACGCGGAATCTACCTTTCCTATCAACTTTTTCATTGACGGTCGTCAGCAGGACGGTCAGCTCGACCTCGATGCT
GCTATCAGCTTCTTCCGTGATATGAGGTATCCGTCAGGTTTCTTCAGAGCTCCTAAACCAATGGGCGTCGAGGGT
ATCGAGACTATTATAGCTGCTCATCCCATTCCTGCCGGCGCAAACAACGGCGCTGTCAACACCTATACTCCCGAC
CCTCACTCTGGGGATTTCAATTCGTTCTGCACGGTATACACCAACTTCGTCAATGAAACGATTAGAGGTTTATAT
CCTTCGCCGACGGGTATATTGAAAGACAGCTTGAACCGAAACTTGGATTTCCTTCACGATTTTGTATCAGGTTGC
CCACAAATCTTCCCGTGGGGGAGATAA
Transcript >AgabiH97|080500
ATGATTAGCTCGCTAGACAGCTTGTTTAAAGCTACGCCATGGTTCTCAAACGCAAACATCCCCCCGTTACTTCTC
AAGATCCCTGTGGCGCTTCTCCCTGCGAAACTATTGATGAATCCCTTTCTCAAACTTGCTGTGCTAGCCTTGGTA
ACTGCACCATTAGCAGGGGCCTTCCCGTCCCATCGCTCCCTTGGTGGCCTCTCTTCAGAACAATTGGATAGAATT
TTTCCAACGCTCAAGGTAGCTCCTCCGGAAGGTCCTCCGCCGCCTCAGGACGATACGTCGACCAGATTGGTTGAT
GACGCTGATCATCCATTTATGCCGGCGGGTCCGAATGACATGCGTGGGCCTTGCCCTGGACTCAATACCCTTGCA
TCCCACGGGTACCTGCCCCGGAATGGAATTGCAACTCCCGCTCAAGTCATCAATGCTACAATGCAAGGTTTCAAC
ATGGAGTTCTCCCTTGCAAAGTTTGTCACATACGCCGCATTCCTGGTAGATGGCAATCCCATTACCAACTTGATG
AGTATCGGAGGAAAAAGCGACCTCACTGGTGAAGACCCTCCCGACCCTGCAACGGTCGGTGGTTTGAACACACAC
GCTGTATTCGAAGGTGATGCCAGCATGACCCGGGCCGATGCGTTCTTTGGGGATAACCACAGCTTTAATCAAACA
TTGTGGGATGGGTTTGTCGACTTCAGTAACCGATTTGGTGCCGGGAAATACAACCTAACGGTGGCCACTGAACTT
CGGATCCAAAGAATCCAGGACTCAATCGCAACAAACCCACAATTCTCATTCGTTTCTCCCCGTTTCATCACAGCC
TACGCGGAATCTACCTTTCCTATCAACTTTTTCATTGACGGTCGTCAGCAGGACGGTCAGCTCGACCTCGATGCT
GCTATCAGCTTCTTCCGTGATATGAGGTATCCGTCAGGTTTCTTCAGAGCTCCTAAACCAATGGGCGTCGAGGGT
ATCGAGACTATTATAGCTGCTCATCCCATTCCTGCCGGCGCAAACAACGGCGCTGTCAACACCTATACTCCCGAC
CCTCACTCTGGGGATTTCAATTCGTTCTGCACGGTATACACCAACTTCGTCAATGAAACGATTAGAGGTTTATAT
CCTTCGCCGACGGGTATATTGAAAGACAGCTTGAACCGAAACTTGGATTTCCTTCACGATTTTGTATCAGGTTGC
CCACAAATCTTCCCGTGGGGGAGATAA
Gene >AgabiH97|080500
ATGATTAGCTCGCTAGACAGCTTGTTTAAAGCTACGCCATGGTTCTCAAACGCAAACATCCCCCCGTTACTTCTC
AAGATCCCTGTGGCGCTTCTCCCTGCGAAACTATTGATGAATCCCTTTCTCAAACTTGCTGTGCTAGCCTTGGTA
ACTGCACCATTAGCAGGGGCCTTCCCGTCCCATCGCTCCCTTGGTGGCCTCTCTTCAGAACAATTGGATAGAATT
TTTCCAACGCTCAAGGTAGCTCCTCCGGAAGGTCCTCCGCCGCCTCAGGACGATACGTCGACCAGATTGGTTGAT
GACGCTGATCATCCATTTATGCCGGCGGGTCCGAATGACATGCGTGGGCCTTGCCCTGGACTCAATACCCTTGCA
TCCCACGGGGTAATTTATCTCTTCGTCTACTCCCAATGCAAATTCACATCCGTCATGACAGTACCTGCCCCGGAA
TGGAATTGCAACTCCCGCTCAAGTCATCAATGCTACAATGCAAGGCGAGTAATTTACAGTTTTTCCTGGAAATCT
GGTACTAAAAATTTGCAGGTTTCAACATGGAGTTCTCCCTTGCAAAGTTTGTCACATACGCCGCATTCCTGGTAG
ATGGCAATCCCATTACCAACTTGATGAGTATCGGAGGAAAAAGCGACCTCACTGGTGAAGACCCTCCCGACCCTG
CAACGGTCGGTGGTTTGAACACACACGCTGTATTCGAAGGTGCTGTGTCTTTTTGAGGGTCGTGGGTTGTATTTA
ACGATAGGTTCATATAGGTGATGCCAGCATGACCCGGGCCGATGCGTTCTTTGGGGATAACCACAGCTTTAATCA
AACATTGTGGGATGGGGTACGTACGGTCGTTCTTTGATATTCTTCAATTACTCATATGTCCACCTTTCTCTTTCA
GTTTGTCGACTTCAGTAACCGATTTGGTGCCGGGAAATACAACCTAACGGTGGCCACTGAACTTCGGATCCAAAG
AATCCAGGACTCAATCGCAACAAACCCACAATTCTCATTCGTTTCTCCCCGTTTCATCACAGCCTACGCGGAATC
TACCTTTCCTATCAACTTTTTCATTGACGGTCGTCAGCAGGACGGTCAGCTCGACCTCGATGCTGCTATCAGCTT
CTTCCGTGATATGAGGTATCCGTCAGGTTTCTTCAGAGCTCCTAAACCAATGGGCGTCGAGGGTATCGAGACTAT
TATAGCTGCTCATCCCATTCCTGCCGGCGCAAACAACGGCGCTGTCAACACCTATACTCCCGACCCTCACTCTGG
GGATTTCAATTCGTTCTGCACGGTATACACCAACTTCGTCAATGAAACGATTAGAGGTTTATATCCTTCGCCGAC
GGGTATATTGAAAGACAGCTTGAACCGAAACTTGGATTTCCTTCACGATTTTGTATCAGGTTGCCCACAAATCTT
CCCGTGGGGGAGATAA

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