© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|080220 |
| Gene name | |
| Location | scaffold_5:538212..540103 |
| Strand | - |
| Gene length (bp) | 1891 |
| Transcript length (bp) | 1410 |
| Coding sequence length (bp) | 1410 |
| Protein length (aa) | 470 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 4.3E-19 | 68 | 420 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 84 | 458 | 1.0E-18 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 84 | 434 | 3.0E-15 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 84 | 443 | 1.0E-11 |
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 15 | 248 | 6.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 25 | 47 | 22 |
| 2 | 68 | 90 | 22 |
| 3 | 121 | 143 | 22 |
| 4 | 163 | 185 | 22 |
| 5 | 303 | 322 | 19 |
| 6 | 335 | 354 | 19 |
| 7 | 364 | 386 | 22 |
| 8 | 435 | 457 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|080220 MHIDPQDYEEHSSHKEKATPLPKMQIFIIMLVMLAEPISSTVIYPFVNQFGIMLGSSSRLSSLRNAQLFSIGAGF LTGSAVDPFWTLLIARCAQGAFNGNIGVTKTMVTEITDSTNIAQAYAWLPVMWSSGITLGPLIGGLFAQPARRWP QLSNIKFLVHHPYFLPCAIAGMLALTSFLMAYMGLKESLRPKDILCQTDDADESGKAIYDSDYSSGEESPLLSND LPRKYGSHPTEDSSSEISTLAPIEKEIPLKDLLTRPLLIALANHAFLAFLDQAHQAILPLMYSTSISLGGLSLRP RDIGLVMGVWGAFNAVLQVVFFSRIMKWLGPRTMYITCFSALLVTFSAFPVLNMLSKTTGSTNAMVWITICFQMT FYVAVFMGYGCMQLFIMAAAPTQNSFGAVNALGQMVSSVTRTIAPAFTSSLFSVSIQKHLLGGYFVYFFLLSITS VGVYASFQLPHQMKLRGGR* |
| Coding | >AgabiH97|080220 ATGCATATCGACCCTCAGGACTATGAAGAGCACTCCTCCCACAAGGAGAAGGCCACCCCTCTTCCCAAAATGCAG ATCTTCATTATCATGCTAGTCATGCTGGCCGAGCCCATCTCGTCCACCGTCATCTATCCCTTTGTCAACCAGTTT GGCATTATGCTGGGTTCATCGAGTCGGCTTTCTTCCTTGCGGAATGCACAACTGTTTTCCATTGGGGCAGGCTTT CTGACCGGATCGGCCGTCGACCCCTTCTGGACACTGTTAATTGCACGCTGTGCACAGGGTGCTTTCAATGGAAAC ATCGGTGTTACCAAGACTATGGTTACGGAGATTACGGACTCGACGAATATAGCGCAAGCCTATGCCTGGCTTCCT GTGATGTGGAGTTCGGGAATCACCTTGGGTCCGCTGATAGGAGGGCTTTTCGCACAGCCAGCACGGAGATGGCCC CAACTCTCCAATATCAAATTCCTCGTACATCACCCTTACTTTCTCCCATGTGCTATCGCTGGAATGCTTGCTCTT ACTTCATTCCTTATGGCATATATGGGTCTTAAAGAATCTCTACGTCCTAAAGACATCTTGTGCCAAACCGATGAT GCGGACGAGTCGGGTAAAGCGATTTACGATAGCGATTACTCTTCTGGCGAGGAATCGCCACTTCTATCCAATGAT CTTCCACGGAAATATGGTTCGCACCCTACCGAGGATTCGAGTAGCGAAATCTCTACGTTGGCGCCAATAGAAAAG GAAATCCCTCTCAAGGATCTTCTCACTAGGCCATTGTTGATCGCACTTGCCAATCATGCTTTCCTTGCGTTCCTG GATCAAGCGCATCAGGCCATTTTGCCCCTCATGTACTCGACCTCTATCTCCTTGGGTGGTCTTAGCCTTCGTCCA CGCGATATTGGCTTGGTCATGGGAGTCTGGGGCGCTTTCAATGCGGTTCTCCAGGTTGTCTTCTTTTCCAGGATC ATGAAATGGCTTGGACCAAGGACGATGTATATCACTTGCTTCAGCGCGCTCTTGGTTACCTTTTCTGCTTTCCCA GTCTTGAATATGCTCTCGAAAACGACGGGAAGCACGAATGCTATGGTCTGGATAACGATCTGCTTCCAGATGACA TTCTACGTTGCGGTTTTCATGGGCTATGGTTGCATGCAATTATTTATTATGGCTGCTGCTCCGACCCAAAATTCT TTCGGGGCTGTAAATGCTCTGGGCCAGATGGTGAGTTCGGTTACGAGGACGATAGCACCTGCTTTCACTTCGTCG CTTTTCTCGGTATCTATTCAAAAACATCTTCTTGGGGGTTATTTTGTATATTTCTTTTTACTTTCTATTACATCC GTTGGCGTGTATGCGTCTTTCCAACTACCACATCAGATGAAACTGCGTGGTGGTAGATAA |
| Transcript | >AgabiH97|080220 ATGCATATCGACCCTCAGGACTATGAAGAGCACTCCTCCCACAAGGAGAAGGCCACCCCTCTTCCCAAAATGCAG ATCTTCATTATCATGCTAGTCATGCTGGCCGAGCCCATCTCGTCCACCGTCATCTATCCCTTTGTCAACCAGTTT GGCATTATGCTGGGTTCATCGAGTCGGCTTTCTTCCTTGCGGAATGCACAACTGTTTTCCATTGGGGCAGGCTTT CTGACCGGATCGGCCGTCGACCCCTTCTGGACACTGTTAATTGCACGCTGTGCACAGGGTGCTTTCAATGGAAAC ATCGGTGTTACCAAGACTATGGTTACGGAGATTACGGACTCGACGAATATAGCGCAAGCCTATGCCTGGCTTCCT GTGATGTGGAGTTCGGGAATCACCTTGGGTCCGCTGATAGGAGGGCTTTTCGCACAGCCAGCACGGAGATGGCCC CAACTCTCCAATATCAAATTCCTCGTACATCACCCTTACTTTCTCCCATGTGCTATCGCTGGAATGCTTGCTCTT ACTTCATTCCTTATGGCATATATGGGTCTTAAAGAATCTCTACGTCCTAAAGACATCTTGTGCCAAACCGATGAT GCGGACGAGTCGGGTAAAGCGATTTACGATAGCGATTACTCTTCTGGCGAGGAATCGCCACTTCTATCCAATGAT CTTCCACGGAAATATGGTTCGCACCCTACCGAGGATTCGAGTAGCGAAATCTCTACGTTGGCGCCAATAGAAAAG GAAATCCCTCTCAAGGATCTTCTCACTAGGCCATTGTTGATCGCACTTGCCAATCATGCTTTCCTTGCGTTCCTG GATCAAGCGCATCAGGCCATTTTGCCCCTCATGTACTCGACCTCTATCTCCTTGGGTGGTCTTAGCCTTCGTCCA CGCGATATTGGCTTGGTCATGGGAGTCTGGGGCGCTTTCAATGCGGTTCTCCAGGTTGTCTTCTTTTCCAGGATC ATGAAATGGCTTGGACCAAGGACGATGTATATCACTTGCTTCAGCGCGCTCTTGGTTACCTTTTCTGCTTTCCCA GTCTTGAATATGCTCTCGAAAACGACGGGAAGCACGAATGCTATGGTCTGGATAACGATCTGCTTCCAGATGACA TTCTACGTTGCGGTTTTCATGGGCTATGGTTGCATGCAATTATTTATTATGGCTGCTGCTCCGACCCAAAATTCT TTCGGGGCTGTAAATGCTCTGGGCCAGATGGTGAGTTCGGTTACGAGGACGATAGCACCTGCTTTCACTTCGTCG CTTTTCTCGGTATCTATTCAAAAACATCTTCTTGGGGGTTATTTTGTATATTTCTTTTTACTTTCTATTACATCC GTTGGCGTGTATGCGTCTTTCCAACTACCACATCAGATGAAACTGCGTGGTGGTAGATAA |
| Gene | >AgabiH97|080220 ATGCATATCGACCCTCAGGACTATGAAGAGCACTCCTCCCACAAGGAGAAGGCCACCCCTCTTCCCAAAATGCAG ATCTTCATTATCATGCTAGTCATGCTGGCCGAGCCCATCTCGTCCACCGTCATCTATCCCTTTGTCAACCAGTTT GTGCGCGACACTGGCATTACAGGCGGTGACGAACGTAAAGTAGGGCATTATGCTGGGTTCATCGTGCGTCTTCTG ACAACGCATATAGCTAACTACCTAAACGCGTTTTAACACTATTTTTCTAGGAGTCGGCTTTCTTCCTTGCGGAAT GCACAACTGTTTTCCATTGGGGCAGGCTTTCTGACCGGATCGGCCGTCGACCCGTACTGCTTCTCGGTCCTATTG GTCTCGCTGCTTCATTGTTTACGTTTGGGTTCTCGAACAGCTTCTGGACACTGTTAATTGCACGCTGTGCACAGG GTGCTTTCAATGGAAACATCGGTACGTTGTCTCCGAGTTGACTCCCACAAGTCCCGTCCGTGTTAAATTTTTTGG GGCGCCAGGTGTTACCAAGACTATGGTTACGGAGGTTTGTGCTCTCCAAGATGCCGAGGACTTGTTTAGTGTTCT CATTTCAGTCATTTTCACCCGGATTAGATTACGGACTCGACGAATATAGCGCAAGCCTATGCCTGGCTTCCTGTG ATGTGGAGTTCGGGAATCACCTTGGGGTGAGCGTTCTTCGCTTTCGTAATTCGGTTCAACGCACCGTTCTCATAA TTGTGCCTATTTGTTTGCTAGTCCGCTGATAGGAGGGCTTTTCGCACAGCCAGCACGGAGATGGCCCCAACTCTC CAATATCAAATTCCTCGTACATCACCCTTACTTTCTCCCATGTGCTATCGCTGGAATGCTTGCTCTTACTTCATT CCTTATGGCATATATGGGTCTTAAAGAAGTAAGCAAGTTCCGCACGAGTAAATCTTGTCGGCTGATTTTTCTGGC GAACCTTTTCTAGTCTCTACGTCCTAAAGACATCTTGTGCCAAACCGATGATGCGGACGAGTCGGGTAAAGCGAT TTACGATAGCGATTACTCTTCTGGCGAGGAATCGCCACTTCTATCCAATGATCTTCCACGGAAATATGGTTCGCA CCCTACCGAGGATTCGAGTAGCGAAATCTCTACGTTGGCGCCAATAGAAAAGGAAATCCCTCTCAAGGATCTTCT CACTAGGCCATTGTTGATCGCACTTGCCAATCATGCTTTCCTTGCGTTCCTGGATCAAGCGCATCAGGCCATTTT GCCCCTCATGTACTCGACCTCTATCTCCTTGGGTGGTCTTAGCCTTCGTCCACGCGATATTGGCTTGGTCATGGG AGTCTGGGGCGCTTTCAATGCGGTTCTCCAGGTTGTCTTCTTTTCCAGGATCATGAAATGGCTTGGACCAAGGAC GATGTATATCACTTGCTTCAGCGCGCTCTTGGTTACCTTTTCTGCTTTCCCAGTCTTGAATATGCTCTCGAAAAC GACGGGAAGCACGAATGCTATGGTCTGGATAACGATCTGCTTCCAGATGACATTCTACGTTGCGGTTTTCATGGG CTATGGTGCGTTCGTCGATCATGAGGTACTTTCATTCATTGATCCACGGTTTTGTGTAGGTTGCATGCAATTATT TATTATGGCTGCTGCTCCGACCCAAAATTCTTTCGGGGCTGTAAATGCTCTGGGCCAGATGGTGAGTTCGGTTAC GAGGACGATAGCACCTGCTTTCACTTCGTCGCTTTTCTCGGTATCTATTCAAAAACATCTTCTTGGGGGTTATTT TGTATATTTCTTTTTACTTTCTATTACATCCGTTGGCGTGTATGCGTCTTTCCAACTACCACATCAGATGAAACT GCGTGGTGGTAGATAA |