© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|080070 |
| Gene name | |
| Location | scaffold_5:499721..500729 |
| Strand | + |
| Gene length (bp) | 1008 |
| Transcript length (bp) | 825 |
| Coding sequence length (bp) | 825 |
| Protein length (aa) | 275 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00652 | Ricin_B_lectin | Ricin-type beta-trefoil lectin domain | 2.2E-23 | 132 | 254 |
| PF14200 | RicinB_lectin_2 | Ricin-type beta-trefoil lectin domain-like | 8.3E-09 | 133 | 199 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P26514|XYNA_STRLI | Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2 | 118 | 256 | 3.0E-11 |
| sp|O54161|EABF_STRCO | Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=abfB PE=1 SV=1 | 138 | 255 | 6.0E-09 |
| sp|P96463|EABF_STRLI | Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces lividans GN=abfB PE=1 SV=2 | 138 | 255 | 2.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 5.45 | 1.50 | 9.40 |
| Initials | Initials knots | 10.62 | 4.82 | 16.43 |
| Pileal_Stipeal_center | Stage I stipe center | 23.13 | 11.71 | 34.55 |
| Pileal_Stipeal_shell | Stage I stipe shell | 9.37 | 4.12 | 14.62 |
| DIF_stipe_center | Stage II stipe center | 23.40 | 11.88 | 34.92 |
| DIF_stipe_shell | Stage II stipe shell | 33.19 | 17.53 | 48.84 |
| DIF_stipe_skin | Stage II stipe skin | 23.20 | 11.79 | 34.61 |
| DIF_cap_skin | Stage II cap skin | 18.36 | 8.98 | 27.74 |
| DIF_cap_tissue | Stage II cap tissue | 21.16 | 10.60 | 31.71 |
| DIF_gill_tissue | Stage II gill tissue | 19.64 | 9.27 | 30.01 |
| YFB_stipe_center | Young fruiting body stipe center | 37.53 | 19.77 | 55.29 |
| YFB_stipe_shell | Young fruiting body stipe shell | 48.60 | 26.48 | 70.73 |
| YFB_stipe_skin | Young fruiting body stipe skin | 29.55 | 15.06 | 44.04 |
| YFB_cap_skin | Young fruiting body cap skin | 27.30 | 13.96 | 40.64 |
| YFB_cap_tissue | Young fruiting body cap tissue | 74.93 | 43.76 | 106.10 |
| YFB_gill_tissue | Young fruiting body gill tissue | 15.57 | 7.39 | 23.75 |
| YFB_veil | Young fruiting body veil | 16.82 | 8.19 | 25.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.001140 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.010412 | yes |
| Casing | YFB_veil | 0.004548 | yes |
| Casing | Initials | 0.124851 | no |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.249089 | no |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.000613 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.002084 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.068270 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.004160 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.322151 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.459947 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_gill_tissue | 0.670446 | no |
| DIF_gill_tissue | YFB_veil | 0.793736 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.526281 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.586866 | no |
| YFB_stipe_center | YFB_cap_skin | 0.428091 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.017507 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.008121 | yes |
| YFB_stipe_center | YFB_veil | 0.012274 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.129695 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.065276 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.167242 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.001140 | yes |
| YFB_stipe_shell | YFB_veil | 0.001140 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.896523 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.001625 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.065276 | no |
| YFB_stipe_skin | YFB_veil | 0.113966 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.000613 | yes |
| YFB_cap_skin | YFB_gill_tissue | 0.119465 | no |
| YFB_cap_skin | YFB_veil | 0.185580 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.000613 | yes |
| YFB_cap_tissue | YFB_veil | 0.000613 | yes |
| YFB_gill_tissue | YFB_veil | 0.909459 | no |
| Initials | DIF_gill_tissue | 0.108233 | no |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.002951 | yes |
| Initials | YFB_cap_skin | 0.005671 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.386494 | no |
| Initials | YFB_veil | 0.257674 | no |
| Initials | Pileal_Stipeal_center | 0.024444 | yes |
| Initials | Pileal_Stipeal_shell | 0.849797 | no |
| Initials | DIF_stipe_center | 0.022111 | yes |
| Initials | DIF_stipe_shell | 0.000613 | yes |
| Initials | DIF_stipe_skin | 0.023415 | yes |
| Initials | DIF_cap_skin | 0.138696 | no |
| Initials | DIF_cap_tissue | 0.048834 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.779429 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.172950 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.018896 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.598606 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.760197 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.341142 | no |
| Pileal_Stipeal_center | YFB_veil | 0.475436 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.009123 | yes |
| Pileal_Stipeal_center | DIF_stipe_center | 0.987285 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.364332 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.995947 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.633359 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.888070 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.048212 | yes |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.002084 | yes |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.215960 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.126752 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.007439 | yes |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.009123 | yes |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.067520 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.020260 | yes |
| DIF_stipe_center | DIF_gill_tissue | 0.753681 | no |
| DIF_stipe_center | YFB_stipe_center | 0.182683 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.020790 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.612501 | no |
| DIF_stipe_center | YFB_cap_skin | 0.775117 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.000613 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.315681 | no |
| DIF_stipe_center | YFB_veil | 0.446272 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.375995 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.989983 | no |
| DIF_stipe_center | DIF_cap_skin | 0.601101 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.866900 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.157833 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.823069 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.277589 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.835884 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.686696 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.006032 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.025458 | yes |
| DIF_stipe_shell | YFB_veil | 0.040501 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.363532 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.072150 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.212940 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.771301 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.178069 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.016669 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.600400 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.762563 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.000613 | yes |
| DIF_stipe_skin | YFB_gill_tissue | 0.334080 | no |
| DIF_stipe_skin | YFB_veil | 0.466797 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.622566 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.882038 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.921281 | no |
| DIF_cap_skin | YFB_stipe_center | 0.027205 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.001140 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.182058 | no |
| DIF_cap_skin | YFB_cap_skin | 0.291439 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.000613 | yes |
| DIF_cap_skin | YFB_gill_tissue | 0.771266 | no |
| DIF_cap_skin | YFB_veil | 0.891198 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.800979 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.914189 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.086914 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.007439 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.417331 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.572868 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.000613 | yes |
| DIF_cap_tissue | YFB_gill_tissue | 0.500175 | no |
| DIF_cap_tissue | YFB_veil | 0.641625 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|080070 MMFSWNLVSLVAVVLNAASAVISLPVASESASVPTSSTLPITTTVPSDVTSTVVLPTTSEVPTLVPPSTSVPSTV VPTTTTGVPSTVVPTTTTGVPSTVVPTTTASIPSTITFPTTTGSPTPTPVPFVQINPNGNTAKCLDVQGAVLANG TPVQIFDCNQTPAQQWVIAPGQGQVQLANTTFCLDAGASPASGTGMKIWECFDNLPAQDWFYTDDKRVALTNQGF CLDLTNGDLTNGSQAQVWKCTDNNTNQIWTTSTVAVPLPDPPMSTLVAA* |
| Coding | >AgabiH97|080070 ATGATGTTCTCTTGGAACTTGGTCTCCCTGGTGGCAGTCGTGCTCAATGCAGCCAGCGCAGTGATCTCCCTCCCT GTCGCATCCGAATCTGCCTCCGTTCCAACTAGCTCTACGCTCCCTATCACTACCACTGTCCCTTCTGATGTTACT TCGACCGTTGTTCTCCCTACCACCAGCGAAGTTCCTACTCTTGTCCCCCCTTCCACTAGTGTTCCTTCTACCGTA GTCCCCACTACTACCACCGGTGTTCCCTCTACCGTTGTCCCTACTACTACCACCGGTGTTCCTTCTACCGTTGTC CCTACTACTACTGCCAGTATCCCGTCTACCATCACTTTCCCCACCACTACTGGTTCTCCCACCCCTACTCCTGTA CCCTTTGTGCAGATCAACCCTAACGGAAACACTGCCAAGTGCTTGGACGTCCAAGGCGCAGTTCTCGCGAACGGA ACCCCTGTCCAAATTTTTGATTGTAATCAAACTCCTGCTCAACAATGGGTCATTGCACCTGGCCAAGGTCAAGTT CAATTGGCGAATACTACTTTCTGTTTGGACGCCGGTGCTTCGCCAGCTTCCGGTACTGGAATGAAGATCTGGGAA TGCTTCGATAACTTACCAGCTCAGGATTGGTTCTACACTGATGACAAGAGGGTCGCTCTCACCAACCAAGGCTTC TGTCTCGATCTCACCAATGGAGACTTGACCAACGGAAGCCAAGCACAGGTTTGGAAGTGCACGGACAACAATACC AACCAGATCTGGACCACCTCTACGGTCGCAGTTCCTCTCCCGGACCCGCCGATGTCCACACTGGTAGCTGCATGA |
| Transcript | >AgabiH97|080070 ATGATGTTCTCTTGGAACTTGGTCTCCCTGGTGGCAGTCGTGCTCAATGCAGCCAGCGCAGTGATCTCCCTCCCT GTCGCATCCGAATCTGCCTCCGTTCCAACTAGCTCTACGCTCCCTATCACTACCACTGTCCCTTCTGATGTTACT TCGACCGTTGTTCTCCCTACCACCAGCGAAGTTCCTACTCTTGTCCCCCCTTCCACTAGTGTTCCTTCTACCGTA GTCCCCACTACTACCACCGGTGTTCCCTCTACCGTTGTCCCTACTACTACCACCGGTGTTCCTTCTACCGTTGTC CCTACTACTACTGCCAGTATCCCGTCTACCATCACTTTCCCCACCACTACTGGTTCTCCCACCCCTACTCCTGTA CCCTTTGTGCAGATCAACCCTAACGGAAACACTGCCAAGTGCTTGGACGTCCAAGGCGCAGTTCTCGCGAACGGA ACCCCTGTCCAAATTTTTGATTGTAATCAAACTCCTGCTCAACAATGGGTCATTGCACCTGGCCAAGGTCAAGTT CAATTGGCGAATACTACTTTCTGTTTGGACGCCGGTGCTTCGCCAGCTTCCGGTACTGGAATGAAGATCTGGGAA TGCTTCGATAACTTACCAGCTCAGGATTGGTTCTACACTGATGACAAGAGGGTCGCTCTCACCAACCAAGGCTTC TGTCTCGATCTCACCAATGGAGACTTGACCAACGGAAGCCAAGCACAGGTTTGGAAGTGCACGGACAACAATACC AACCAGATCTGGACCACCTCTACGGTCGCAGTTCCTCTCCCGGACCCGCCGATGTCCACACTGGTAGCTGCATGA |
| Gene | >AgabiH97|080070 ATGATGTTCTCTTGGAACTTGGTCTCCCTGGTGGCAGTCGTGCTCAATGCAGCCAGCGCAGTGATCTCCCTCCCT GTCGCATCCGAATCTGCCTCCGTTCCAACTAGCTCTACGCTCCCTATCACTACCACTGTCCCTTCTGATGTTACT TCGACCGTTGTTCTCCCTACCACCAGCGAAGTTCCTACTCTTGTCCCCCCTTCCACTAGTGTTCCTTCTACCGTA GTCCCCACTACTACCACCGGTGTTCCCTCTACCGTTGTCCCTACTACTACCACCGGTGTTCCTTCTACCGTTGTC CCTACTACTACTGCCAGTATCCCGTCTACCATCACTTTCCCCACCACTACTGGTTCTCCCACCCCTACTCCTGTA CCCTTTGTGCAGATCAACCCTAACGGAAACACTGCCAAGTGCTTGGACGTCCAAGGCGCAGTTCTCGCGAACGGA ACCCCTGTCCAAATGTTTGTTGTTTTCTTCAAATTCTCACACCCGTGGCAGCAAATGCTCACGTTTTCGTAACAG TTTTGATTGTAATCAAACTCCTGCTCAACAATGGGTCATTGCACCTGGCCAAGGTCAAGTTCAATTGGCGAATAC TACTTTCTGTTTGGACGCCGGTGCTTGTAAGTATACCAAACATAAAGTGTCAAATTCTACGGTGCTAATCAAATT TCTAAAAATAAAACAATAGCGCCAGCTTCCGGTACTGGAATGAAGATCTGGGAATGCTTCGATAACTTACCAGCT CAGGATTGGTTCTACACTGATGACAAGAGGGTCGCTCTCACCAACCAAGGTAAAGGCGGGATATACTATATGTAG AAAACCGCAACTAATGATTCCTTTAAAGGCTTCTGTCTCGATCTCACCAATGGAGACTTGACCAACGGAAGCCAA GCACAGGTTTGGAAGTGCACGGACAACAATACCAACCAGATCTGGACCACCTCTACGGTCGCAGTTCCTCTCCCG GACCCGCCGATGTCCACACTGGTAGCTGCATGA |