Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|079680
Gene name
Location	scaffold_5:396249..397572
Strand	-
Gene length (bp)	1323
Transcript length (bp)	951
Coding sequence length (bp)	951
Protein length (aa)	317

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05705	DUF829	Eukaryotic protein of unknown function (DUF829)	1.7E-35	61	308

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q6DHN0\|TMM53_DANRE	Transmembrane protein 53 OS=Danio rerio GN=tmem53 PE=2 SV=1	56	300	1.0E-15
sp\|Q6DJC8\|TM53B_XENLA	Transmembrane protein 53-B OS=Xenopus laevis GN=tmem53-b PE=2 SV=1	62	300	1.0E-11
sp\|Q6P2H8\|TMM53_HUMAN	Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1	49	300	2.0E-08
sp\|Q2TBP5\|TMM53_BOVIN	Transmembrane protein 53 OS=Bos taurus GN=TMEM53 PE=2 SV=1	49	300	3.0E-07
sp\|Q9D0Z3\|TMM53_MOUSE	Transmembrane protein 53 OS=Mus musculus GN=Tmem53 PE=2 SV=1	62	300	1.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 26	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|079680 MLFGANKLRIKAVSGLAPDPQKSMAGEMVSMTANDTCVKVGEGIHLYRPTEPGPIKSSHPTVVLIFGWMAARFSH LQKYTSIYRERQRAQHKALAPLVDVLEALGLIHPLQEASKPRKTPLDSIVPLPTHRILLHVFSNGGCCQLMILGS IISNRRAASLTTATHTPASALILDSCPGDGGFSSAERAFTISVTNPLLRMLVKLGVIILFSLRLVMEHVFRQQSA IPFMRSQLNDPDMVPWLNKNSPRLYIYSEGDEMVPVHAVEQHMKDAVEKGFNVQPVKFGKESKHVAHARSDPSRY WGATEQMWKEAIGVQD*
Coding	>AgabiH97\|079680 ATGCTCTTTGGTGCAAACAAACTTCGCATCAAGGCTGTGAGCGGCTTGGCCCCGGATCCCCAAAAGAGCATGGCA GGGGAGATGGTTTCTATGACGGCTAACGATACTTGTGTCAAGGTCGGTGAAGGAATACACCTCTACCGACCCACA GAACCTGGTCCCATAAAATCATCGCACCCAACGGTCGTTCTCATTTTTGGTTGGATGGCAGCTAGATTCTCCCAT CTTCAGAAATATACCTCTATCTATCGTGAACGTCAACGTGCACAACACAAAGCTCTCGCTCCTTTAGTAGACGTC CTTGAAGCTCTTGGATTGATTCATCCTTTACAAGAAGCTTCGAAACCCCGCAAAACGCCATTGGACTCGATTGTT CCCCTCCCAACACATAGAATTCTGCTTCACGTATTCAGCAACGGCGGTTGTTGCCAGCTCATGATCCTCGGCAGC ATTATTTCTAACCGTCGCGCAGCATCCCTAACCACAGCCACACACACGCCTGCCAGTGCCCTGATCCTCGACTCC TGTCCAGGTGACGGCGGTTTCTCTTCAGCTGAACGTGCATTTACTATCTCTGTCACCAATCCTCTTCTTCGAATG CTAGTCAAACTTGGTGTCATCATCCTCTTCAGCCTCCGGCTCGTCATGGAACACGTTTTTCGCCAACAATCCGCT ATACCTTTTATGAGGTCCCAACTTAACGATCCTGATATGGTACCATGGCTAAACAAAAACTCACCGAGGTTGTAC ATATACTCCGAAGGAGACGAAATGGTTCCTGTCCATGCTGTAGAGCAGCATATGAAGGACGCGGTGGAGAAAGGA TTTAATGTACAGCCTGTGAAATTCGGAAAGGAGTCAAAGCATGTTGCTCATGCAAGGAGTGACCCGTCTAGATAT TGGGGAGCTACAGAGCAGATGTGGAAAGAAGCGATCGGGGTGCAGGACTAA
Transcript	>AgabiH97\|079680 ATGCTCTTTGGTGCAAACAAACTTCGCATCAAGGCTGTGAGCGGCTTGGCCCCGGATCCCCAAAAGAGCATGGCA GGGGAGATGGTTTCTATGACGGCTAACGATACTTGTGTCAAGGTCGGTGAAGGAATACACCTCTACCGACCCACA GAACCTGGTCCCATAAAATCATCGCACCCAACGGTCGTTCTCATTTTTGGTTGGATGGCAGCTAGATTCTCCCAT CTTCAGAAATATACCTCTATCTATCGTGAACGTCAACGTGCACAACACAAAGCTCTCGCTCCTTTAGTAGACGTC CTTGAAGCTCTTGGATTGATTCATCCTTTACAAGAAGCTTCGAAACCCCGCAAAACGCCATTGGACTCGATTGTT CCCCTCCCAACACATAGAATTCTGCTTCACGTATTCAGCAACGGCGGTTGTTGCCAGCTCATGATCCTCGGCAGC ATTATTTCTAACCGTCGCGCAGCATCCCTAACCACAGCCACACACACGCCTGCCAGTGCCCTGATCCTCGACTCC TGTCCAGGTGACGGCGGTTTCTCTTCAGCTGAACGTGCATTTACTATCTCTGTCACCAATCCTCTTCTTCGAATG CTAGTCAAACTTGGTGTCATCATCCTCTTCAGCCTCCGGCTCGTCATGGAACACGTTTTTCGCCAACAATCCGCT ATACCTTTTATGAGGTCCCAACTTAACGATCCTGATATGGTACCATGGCTAAACAAAAACTCACCGAGGTTGTAC ATATACTCCGAAGGAGACGAAATGGTTCCTGTCCATGCTGTAGAGCAGCATATGAAGGACGCGGTGGAGAAAGGA TTTAATGTACAGCCTGTGAAATTCGGAAAGGAGTCAAAGCATGTTGCTCATGCAAGGAGTGACCCGTCTAGATAT TGGGGAGCTACAGAGCAGATGTGGAAAGAAGCGATCGGGGTGCAGGACTAA
Gene	>AgabiH97\|079680 ATGCTCTTTGGTGCAAACAAACTTCGCATCAAGGCTGTGAGCGGCTTGGCCCCGGATCCCCAAAAGAGCATGGCA GGGGTTTCATTTGCGTTGAATCACACAGTCCCCCACATAGAACGAGTGCTAGGAGGTGAGTATTCAGTGTACTGT TTTTCTAATCAAGTTAACTTAGCCTTTCTAGATGGTTTCTATGACGGCTAACGATACTTGTGTCAAGGTCGGTGA AGGAATACACCTCTACCGACCCACAGAACCTGGTCCCATAAAATCATCGCACCCAACGTGAGTGAACCCGCATAA GTTTCGTCTATATCGCCAACTCATCATTATATTGTAGGGTCGTTCTCATTTTTGGTTGGAGTATGTATACCCCAG AATTGCAATGACGACACCACGCTAAACTGAACTATACTCCTAGTGGCAGCTAGATTCTCCCATCTTCAGAAATAT ACCTCTATCTATCGTGAACGGTACCCAAATACGACGTTGGTCTTGACTCAATGCGAACCTTCTTTTTTTTGGAGC AGTCAACGTGCACAAGTACGTCAACGGTCATACCACTGGCTTAAATCGCTAATTTATTTTGTAAAAGCACAAAGC TCTCGCTCCTTTAGTAGACGTCCTTGAAGCTCTTGGATTGATTCATCCTTTACAAGAAGCTTCGAAACCCCGCAA AACGCCATTGGACTCGATTGTTCCCCTCCCAACACATAGAATTCTGCTTCACGTATTCAGCAACGGTATATTCAT TGCGACCTTCTTAGTCCTCATGACTCATTCCAACTTCCAGGCGGTTGTTGCCAGCTCATGATCCTCGGCAGCATT ATTTCTAACCGTCGCGCAGCATCCCTAACCACAGCCACACACACGCCTGCCAGTGCCCTGATCCTCGACTCCTGT CCAGGTGACGGCGGTTTCTCTTCAGCTGAACGTGCATTTACTATCTCTGTCACCAATCCTCTTCTTCGAATGCTA GTCAAACTTGGTGTCATCATCCTCTTCAGCCTCCGGCTCGTCATGGAACACGTTTTTCGCCAACAATCCGCTATA CCTTTTATGAGGTCCCAACTTAACGATCCTGATATGGTACCATGGCTAAACAAAAACTCACCGAGGTTGTACATA TACTCCGAAGGAGACGAAATGGTTCCTGTCCATGCTGTAGAGCAGCATATGAAGGACGCGGTGGAGAAAGGATTT AATGTACAGCCTGTGAAATTCGGAAAGGAGTCAAAGCATGTTGCTCATGCAAGGAGTGACCCGTCTAGATATTGG GGAGCTACAGAGCAGATGTGGAAAGAAGCGATCGGGGTGCAGGACTAA

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