Fungal Genomics

General Properties

Protein ID	AgabiH97|079290
Gene name
Location	scaffold_5:280168..281642
Strand	+
Gene length (bp)	1474
Transcript length (bp)	1092
Coding sequence length (bp)	1092
Protein length (aa)	364

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00107	ADH_zinc_N	Zinc-binding dehydrogenase	1.6E-20	184	314
PF13602	ADH_zinc_N_2	Zinc-binding dehydrogenase	1.2E-10	216	350

Swissprot hits

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm	Peroxisomal targeting signal	0.629	0.3	0.136	0.0364	0.2351	0.0062	0.1118	0.1699	0.1395	0.3601

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	55.11	31.83	78.39
Initials	Initials knots	55.51	32.76	78.26
Pileal_Stipeal_center	Stage I stipe center	62.89	37.61	88.16
Pileal_Stipeal_shell	Stage I stipe shell	50.06	29.47	70.66
DIF_stipe_center	Stage II stipe center	67.28	40.08	94.48
DIF_stipe_shell	Stage II stipe shell	70.58	42.21	98.96
DIF_stipe_skin	Stage II stipe skin	71.93	43.00	100.85
DIF_cap_skin	Stage II cap skin	68.48	40.70	96.25
DIF_cap_tissue	Stage II cap tissue	70.69	41.67	99.71
DIF_gill_tissue	Stage II gill tissue	52.19	30.66	73.73
YFB_stipe_center	Young fruiting body stipe center	77.08	46.13	108.02
YFB_stipe_shell	Young fruiting body stipe shell	74.46	44.61	104.31
YFB_stipe_skin	Young fruiting body stipe skin	80.00	47.47	112.54
YFB_cap_skin	Young fruiting body cap skin	61.60	36.58	86.62
YFB_cap_tissue	Young fruiting body cap tissue	64.03	37.89	90.16
YFB_gill_tissue	Young fruiting body gill tissue	47.63	27.18	68.07
YFB_veil	Young fruiting body veil	51.32	30.12	72.53

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.919193	no
Casing	YFB_stipe_center	0.278986	no
Casing	YFB_stipe_shell	0.344670	no
Casing	YFB_stipe_skin	0.222255	no
Casing	YFB_cap_skin	0.806119	no
Casing	YFB_cap_tissue	0.718335	no
Casing	YFB_gill_tissue	0.740455	no
Casing	YFB_veil	0.889487	no
Casing	Initials	0.989627	no
Casing	Pileal_Stipeal_center	0.763293	no
Casing	Pileal_Stipeal_shell	0.844433	no
Casing	DIF_stipe_center	0.597567	no
Casing	DIF_stipe_shell	0.485147	no
Casing	DIF_stipe_skin	0.436563	no
Casing	DIF_cap_skin	0.559782	no
Casing	DIF_cap_tissue	0.483701	no
DIF_gill_tissue	YFB_stipe_center	0.188780	no
DIF_gill_tissue	YFB_stipe_shell	0.240720	no
DIF_gill_tissue	YFB_stipe_skin	0.148101	no
DIF_gill_tissue	YFB_cap_skin	0.688889	no
DIF_gill_tissue	YFB_cap_tissue	0.592918	no
DIF_gill_tissue	YFB_gill_tissue	0.859259	no
DIF_gill_tissue	YFB_veil	0.977318	no
YFB_stipe_center	YFB_stipe_shell	0.949418	no
YFB_stipe_center	YFB_stipe_skin	0.944762	no
YFB_stipe_center	YFB_cap_skin	0.523743	no
YFB_stipe_center	YFB_cap_tissue	0.624262	no
YFB_stipe_center	YFB_gill_tissue	0.093832	no
YFB_stipe_center	YFB_veil	0.167625	no
YFB_stipe_shell	YFB_stipe_skin	0.884127	no
YFB_stipe_shell	YFB_cap_skin	0.612734	no
YFB_stipe_shell	YFB_cap_tissue	0.706734	no
YFB_stipe_shell	YFB_gill_tissue	0.124266	no
YFB_stipe_shell	YFB_veil	0.215162	no
YFB_stipe_skin	YFB_cap_skin	0.448483	no
YFB_stipe_skin	YFB_cap_tissue	0.546079	no
YFB_stipe_skin	YFB_gill_tissue	0.069763	no
YFB_stipe_skin	YFB_veil	0.127930	no
YFB_cap_skin	YFB_cap_tissue	0.941542	no
YFB_cap_skin	YFB_gill_tissue	0.473138	no
YFB_cap_skin	YFB_veil	0.646169	no
YFB_cap_tissue	YFB_gill_tissue	0.381485	no
YFB_cap_tissue	YFB_veil	0.547861	no
YFB_gill_tissue	YFB_veil	0.886172	no
Initials	DIF_gill_tissue	0.909860	no
Initials	YFB_stipe_center	0.299932	no
Initials	YFB_stipe_shell	0.369030	no
Initials	YFB_stipe_skin	0.237992	no
Initials	YFB_cap_skin	0.827477	no
Initials	YFB_cap_tissue	0.743606	no
Initials	YFB_gill_tissue	0.732410	no
Initials	YFB_veil	0.878590	no
Initials	Pileal_Stipeal_center	0.787382	no
Initials	Pileal_Stipeal_shell	0.835097	no
Initials	DIF_stipe_center	0.626136	no
Initials	DIF_stipe_shell	0.514500	no
Initials	DIF_stipe_skin	0.463944	no
Initials	DIF_cap_skin	0.590724	no
Initials	DIF_cap_tissue	0.512411	no
Pileal_Stipeal_center	DIF_gill_tissue	0.638391	no
Pileal_Stipeal_center	YFB_stipe_center	0.579955	no
Pileal_Stipeal_center	YFB_stipe_shell	0.667525	no
Pileal_Stipeal_center	YFB_stipe_skin	0.498845	no
Pileal_Stipeal_center	YFB_cap_skin	0.970007	no
Pileal_Stipeal_center	YFB_cap_tissue	0.974219	no
Pileal_Stipeal_center	YFB_gill_tissue	0.421541	no
Pileal_Stipeal_center	YFB_veil	0.595107	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.536719	no
Pileal_Stipeal_center	DIF_stipe_center	0.893884	no
Pileal_Stipeal_center	DIF_stipe_shell	0.800951	no
Pileal_Stipeal_center	DIF_stipe_skin	0.755363	no
Pileal_Stipeal_center	DIF_cap_skin	0.867297	no
Pileal_Stipeal_center	DIF_cap_tissue	0.798991	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.940225	no
Pileal_Stipeal_shell	YFB_stipe_center	0.132559	no
Pileal_Stipeal_shell	YFB_stipe_shell	0.175423	no
Pileal_Stipeal_shell	YFB_stipe_skin	0.103634	no
Pileal_Stipeal_shell	YFB_cap_skin	0.582484	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.494241	no
Pileal_Stipeal_shell	YFB_gill_tissue	0.928160	no
Pileal_Stipeal_shell	YFB_veil	0.965214	no
Pileal_Stipeal_shell	DIF_stipe_center	0.375368	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.281825	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.242017	no
Pileal_Stipeal_shell	DIF_cap_skin	0.344670	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.284846	no
DIF_stipe_center	DIF_gill_tissue	0.476232	no
DIF_stipe_center	YFB_stipe_center	0.747569	no
DIF_stipe_center	YFB_stipe_shell	0.825085	no
DIF_stipe_center	YFB_stipe_skin	0.668114	no
DIF_stipe_center	YFB_cap_skin	0.855184	no
DIF_stipe_center	YFB_cap_tissue	0.923849	no
DIF_stipe_center	YFB_gill_tissue	0.288884	no
DIF_stipe_center	YFB_veil	0.435575	no
DIF_stipe_center	DIF_stipe_shell	0.926929	no
DIF_stipe_center	DIF_stipe_skin	0.894899	no
DIF_stipe_center	DIF_cap_skin	0.975724	no
DIF_stipe_center	DIF_cap_tissue	0.925237	no
DIF_stipe_shell	DIF_gill_tissue	0.360702	no
DIF_stipe_shell	YFB_stipe_center	0.853454	no
DIF_stipe_shell	YFB_stipe_shell	0.919001	no
DIF_stipe_shell	YFB_stipe_skin	0.778227	no
DIF_stipe_shell	YFB_cap_skin	0.753818	no
DIF_stipe_shell	YFB_cap_tissue	0.837007	no
DIF_stipe_shell	YFB_gill_tissue	0.198297	no
DIF_stipe_shell	YFB_veil	0.325421	no
DIF_stipe_shell	DIF_stipe_skin	0.972958	no
DIF_stipe_shell	DIF_cap_skin	0.958901	no
DIF_stipe_shell	DIF_cap_tissue	0.997403	no
DIF_stipe_skin	DIF_gill_tissue	0.321000	no
DIF_stipe_skin	YFB_stipe_center	0.888604	no
DIF_stipe_skin	YFB_stipe_shell	0.950065	no
DIF_stipe_skin	YFB_stipe_skin	0.818546	no
DIF_stipe_skin	YFB_cap_skin	0.708320	no
DIF_stipe_skin	YFB_cap_tissue	0.795589	no
DIF_stipe_skin	YFB_gill_tissue	0.172307	no
DIF_stipe_skin	YFB_veil	0.285239	no
DIF_stipe_skin	DIF_cap_skin	0.929180	no
DIF_stipe_skin	DIF_cap_tissue	0.974958	no
DIF_cap_skin	DIF_gill_tissue	0.433140	no
DIF_cap_skin	YFB_stipe_center	0.787340	no
DIF_cap_skin	YFB_stipe_shell	0.860420	no
DIF_cap_skin	YFB_stipe_skin	0.708904	no
DIF_cap_skin	YFB_cap_skin	0.818668	no
DIF_cap_skin	YFB_cap_tissue	0.893602	no
DIF_cap_skin	YFB_gill_tissue	0.248658	no
DIF_cap_skin	YFB_veil	0.390956	no
DIF_cap_skin	DIF_cap_tissue	0.954360	no
DIF_cap_tissue	DIF_gill_tissue	0.365882	no
DIF_cap_tissue	YFB_stipe_center	0.857821	no
DIF_cap_tissue	YFB_stipe_shell	0.921606	no
DIF_cap_tissue	YFB_stipe_skin	0.785574	no
DIF_cap_tissue	YFB_cap_skin	0.754404	no
DIF_cap_tissue	YFB_cap_tissue	0.835390	no
DIF_cap_tissue	YFB_gill_tissue	0.207159	no
DIF_cap_tissue	YFB_veil	0.330826	no

Orthologs

Orthofinder run ID	1
Orthogroup	2663
Change Orthofinder run	1: Agaricomycetes 5: Agaricus - all strains

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39|079290
Agaricus bisporus var bisporus H97	AgabiH97|079290 (this protein)
Rhodonia placenta FPRL280	RhoplFPRL280|15_63

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|079290 MTIPQSSKAIILQRSNTQQKPAYDEAVLVERPIPSLKQGEVLVRVAAAALNHRDVWIRKRMYPGIVVGSVFGADG AGTVIASAWPEDPLINKRVFLTPSRGWEKDPSAPESKFGILGGGAHPPIGTFTEYIVVERDQVILTPDHLNDVQA AAWPLGGVTAWRAAIVNANVQAGENILITGIGGGVALTAMQLCLAKGASVYVTSGSEEKIQKAISLGAKGGANYK DADWPDHILAHLKKNSTNSQLDAVIDSSGGDIMGNVAKSLKQGGKVVCYGMTTAPAITFTMREVLKNQKLLGSTM GSRQDLIDATEFLTQKHIIPTVSHVIDGLESAEEGFETMKRGDQFGKIVIKLRDSFQLQQSNL*
Coding	>AgabiH97|079290 ATGACGATCCCACAATCCTCGAAGGCAATAATACTTCAGAGATCTAATACGCAACAGAAGCCGGCTTACGATGAG GCGGTACTTGTTGAAAGGCCAATCCCATCTCTCAAACAAGGAGAGGTGCTTGTGAGAGTGGCAGCTGCTGCGTTG AATCACAGAGATGTGTGGATCAGAAAGAGAATGTATCCCGGTATTGTTGTAGGGAGCGTGTTCGGCGCCGATGGT GCCGGGACGGTAATAGCATCAGCATGGCCTGAAGATCCCCTCATCAATAAGCGCGTTTTTCTTACTCCCAGTCGC GGATGGGAAAAAGATCCGTCAGCACCCGAGTCAAAGTTTGGTATTCTTGGAGGAGGTGCCCACCCACCAATTGGA ACTTTTACTGAATACATAGTTGTTGAGCGTGATCAAGTAATCCTGACTCCTGATCACCTCAACGACGTTCAAGCT GCTGCCTGGCCCCTGGGTGGAGTGACCGCTTGGCGAGCAGCAATTGTGAACGCAAATGTGCAAGCCGGAGAAAAC ATTTTGATTACGGGCATAGGTGGTGGCGTCGCTCTTACTGCAATGCAACTCTGCCTCGCAAAGGGTGCCTCGGTC TACGTCACAAGTGGAAGCGAGGAGAAGATCCAGAAGGCTATCAGTCTAGGAGCCAAAGGAGGCGCAAATTACAAG GATGCTGACTGGCCGGACCATATTTTGGCTCACTTGAAGAAGAATTCGACGAATTCTCAACTAGACGCTGTTATC GACTCTAGTGGCGGCGACATCATGGGAAACGTAGCGAAATCTCTGAAGCAAGGAGGCAAGGTCGTTTGTTATGGA ATGACTACGGCGCCTGCCATAACATTCACAATGCGCGAAGTATTAAAGAACCAGAAGTTGTTAGGTTCAACTATG GGCTCTCGTCAAGACCTTATCGATGCTACCGAGTTCCTTACTCAGAAGCACATTATACCTACCGTATCGCACGTC ATTGACGGTTTGGAATCAGCCGAGGAAGGATTCGAAACTATGAAACGTGGGGATCAATTTGGCAAAATCGTCATA AAACTACGCGACTCCTTCCAACTACAACAATCAAACTTGTAG
Transcript	>AgabiH97|079290 ATGACGATCCCACAATCCTCGAAGGCAATAATACTTCAGAGATCTAATACGCAACAGAAGCCGGCTTACGATGAG GCGGTACTTGTTGAAAGGCCAATCCCATCTCTCAAACAAGGAGAGGTGCTTGTGAGAGTGGCAGCTGCTGCGTTG AATCACAGAGATGTGTGGATCAGAAAGAGAATGTATCCCGGTATTGTTGTAGGGAGCGTGTTCGGCGCCGATGGT GCCGGGACGGTAATAGCATCAGCATGGCCTGAAGATCCCCTCATCAATAAGCGCGTTTTTCTTACTCCCAGTCGC GGATGGGAAAAAGATCCGTCAGCACCCGAGTCAAAGTTTGGTATTCTTGGAGGAGGTGCCCACCCACCAATTGGA ACTTTTACTGAATACATAGTTGTTGAGCGTGATCAAGTAATCCTGACTCCTGATCACCTCAACGACGTTCAAGCT GCTGCCTGGCCCCTGGGTGGAGTGACCGCTTGGCGAGCAGCAATTGTGAACGCAAATGTGCAAGCCGGAGAAAAC ATTTTGATTACGGGCATAGGTGGTGGCGTCGCTCTTACTGCAATGCAACTCTGCCTCGCAAAGGGTGCCTCGGTC TACGTCACAAGTGGAAGCGAGGAGAAGATCCAGAAGGCTATCAGTCTAGGAGCCAAAGGAGGCGCAAATTACAAG GATGCTGACTGGCCGGACCATATTTTGGCTCACTTGAAGAAGAATTCGACGAATTCTCAACTAGACGCTGTTATC GACTCTAGTGGCGGCGACATCATGGGAAACGTAGCGAAATCTCTGAAGCAAGGAGGCAAGGTCGTTTGTTATGGA ATGACTACGGCGCCTGCCATAACATTCACAATGCGCGAAGTATTAAAGAACCAGAAGTTGTTAGGTTCAACTATG GGCTCTCGTCAAGACCTTATCGATGCTACCGAGTTCCTTACTCAGAAGCACATTATACCTACCGTATCGCACGTC ATTGACGGTTTGGAATCAGCCGAGGAAGGATTCGAAACTATGAAACGTGGGGATCAATTTGGCAAAATCGTCATA AAACTACGCGACTCCTTCCAACTACAACAATCAAACTTGTAG
Gene	>AgabiH97|079290 ATGACGATCCCACAATCCTCGAAGGCAATAATACTTCAGAGATCTAATACGCAACAGAAGCCGGCTTACGATGAG GCGGTACTTGTTGAAAGGCCAATCCCATCTCTCAAACAAGGAGAGGTGCTTGTGAGAGTGGCAGCTGCTGCGTTG AATCACAGAGATGTAAGCACAACGACTCTTCATGGGCCCTGTTCTCTTCTGAAGTATCACTAGGTGTGGATCAGA AAGAGAATGTATCCCGGTATTGTTGTAGGGAGCGTGTTCGGCGCCGATGGTGCCGGTAAGGCTGTCTTTTCCTCT CCATCATCAGTACATTGACCCTGATATTCAAACTCTCCATCTTGGTAGGGACGGTAATAGCATCAGCATGGCCTG AAGATCCCCTCATCAATAAGCGCGTTTTTCTTACTCCCAGTCGCGGATGGGAAAAAGATCCGTCAGCACCCGAGT CAAAGTACGTCCGAGCCTTTGCCATCTCGTTCGACCTGTCAACACGACTTCAGGTTTGGTATTCTTGGAGGAGGT GCCCACCCACCAATTGGAACTTTTACTGAATACATAGTTGTTGAGCGTGATCAAGTAATCCTGACTCCTGATCAC CTCAACGACGTTCAAGCTGCTGCCTGGCCCCTGGGTGGAGTGACCGCTTGGCGGTAAGTGAGCTGGCGAATAACC CCAACTTATCGCCTTGTCAATATGCAACACCCGCAGAGCAGCAATTGTGAACGCAAATGTGCAAGCCGGAGAAAA CATTTTGATTACGGGCATAGGTGGTGGCGTCGCTCTTACTGCAATGCAACTCTGCCTCGCAAAGGGTGCCTCGGT CTACGTCACAAGTGGAAGCGAGGAGAAGATCCAGAAGGCTATCAGTCTAGGAGCCAAAGGAGGCGCAAATTACAA GGATGGTTGGTAACAACAGCCTCTCATACTCGTTACTATTCTTAATACCAAGGATTTCAGCTGACTGGCCGGACC ATATTTTGGCTCACTTGAAGAAGAATTCGACGAATTCTCAACTAGACGCTGTTATCGACTCTAGTGGCGGCGACA TCATGGGAAACGTAGCGAAATCTCTGAAGCAAGGAGGCAAGGTCGTTTGTTATGGAATGTAAACTCCTCTCCTTT GTTCTCGCTGTGCTCCTTTGACTTTGGCGTAAGGACTACGGCGCCTGCCATAACATTCACAATGCGCGAAGTATT AAAGAACCAGAAGTTGTTAGGTAAGTTATCCTCATTCCTTGTTATTGCTCTCATCACAAAATAAATGATAGGTTC AACTATGGGCTCTCGTCAAGACCTTATCGATGCTACCGAGTTCCTTACTCAGAAGCACATTATACCTACCGTATC GCACGTCATTGACGGTTTGGAATCAGCCGAGGAAGGATTCGAAACTATGAAACGTGGGGATCAATTTGGCAAAAT CGTCATAAAACTACGCGACTCCTTCCAACTACAACAATCAAACTTGTAG