© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|079100 |
| Gene name | |
| Location | scaffold_5:233995..235336 |
| Strand | + |
| Gene length (bp) | 1341 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00657 | Lipase_GDSL | GDSL-like Lipase/Acylhydrolase | 9.0E-09 | 65 | 326 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 32.22 | 16.34 | 48.10 |
| Initials | Initials knots | 44.72 | 25.49 | 63.94 |
| Pileal_Stipeal_center | Stage I stipe center | 20.01 | 10.32 | 29.70 |
| Pileal_Stipeal_shell | Stage I stipe shell | 26.71 | 14.21 | 39.21 |
| DIF_stipe_center | Stage II stipe center | 15.04 | 7.47 | 22.62 |
| DIF_stipe_shell | Stage II stipe shell | 11.49 | 5.48 | 17.50 |
| DIF_stipe_skin | Stage II stipe skin | 16.08 | 8.03 | 24.13 |
| DIF_cap_skin | Stage II cap skin | 25.12 | 13.34 | 36.90 |
| DIF_cap_tissue | Stage II cap tissue | 29.27 | 15.85 | 42.70 |
| DIF_gill_tissue | Stage II gill tissue | 29.51 | 16.00 | 43.01 |
| YFB_stipe_center | Young fruiting body stipe center | 12.07 | 5.76 | 18.38 |
| YFB_stipe_shell | Young fruiting body stipe shell | 9.43 | 4.34 | 14.52 |
| YFB_stipe_skin | Young fruiting body stipe skin | 14.27 | 7.02 | 21.53 |
| YFB_cap_skin | Young fruiting body cap skin | 23.51 | 12.37 | 34.65 |
| YFB_cap_tissue | Young fruiting body cap tissue | 28.60 | 15.40 | 41.80 |
| YFB_gill_tissue | Young fruiting body gill tissue | 27.88 | 14.56 | 41.19 |
| YFB_veil | Young fruiting body veil | 23.25 | 12.21 | 34.28 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.877923 | no |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.010412 | yes |
| Casing | YFB_cap_skin | 0.426625 | no |
| Casing | YFB_cap_tissue | 0.823923 | no |
| Casing | YFB_gill_tissue | 0.777889 | no |
| Casing | YFB_veil | 0.411194 | no |
| Casing | Initials | 0.372239 | no |
| Casing | Pileal_Stipeal_center | 0.179208 | no |
| Casing | Pileal_Stipeal_shell | 0.696474 | no |
| Casing | DIF_stipe_center | 0.014668 | yes |
| Casing | DIF_stipe_shell | 0.000613 | yes |
| Casing | DIF_stipe_skin | 0.031557 | yes |
| Casing | DIF_cap_skin | 0.567045 | no |
| Casing | DIF_cap_tissue | 0.865196 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.002525 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.022892 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.599792 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.959321 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.923755 | no |
| DIF_gill_tissue | YFB_veil | 0.578239 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.627627 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.753117 | no |
| YFB_stipe_center | YFB_cap_skin | 0.046117 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.004160 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.006742 | yes |
| YFB_stipe_center | YFB_veil | 0.051318 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.306903 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.005302 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.001140 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.001140 | yes |
| YFB_stipe_shell | YFB_veil | 0.007439 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.150844 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.026215 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.033211 | yes |
| YFB_stipe_skin | YFB_veil | 0.165164 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.671893 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.726706 | no |
| YFB_cap_skin | YFB_veil | 0.985688 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.966803 | no |
| YFB_cap_tissue | YFB_veil | 0.647578 | no |
| YFB_gill_tissue | YFB_veil | 0.703809 | no |
| Initials | DIF_gill_tissue | 0.210892 | no |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.000613 | yes |
| Initials | YFB_cap_skin | 0.029164 | yes |
| Initials | YFB_cap_tissue | 0.162096 | no |
| Initials | YFB_gill_tissue | 0.137455 | no |
| Initials | YFB_veil | 0.027943 | yes |
| Initials | Pileal_Stipeal_center | 0.006032 | yes |
| Initials | Pileal_Stipeal_shell | 0.096942 | no |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.000613 | yes |
| Initials | DIF_stipe_skin | 0.000613 | yes |
| Initials | DIF_cap_skin | 0.059318 | no |
| Initials | DIF_cap_tissue | 0.189160 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.295336 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.155303 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.033674 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.407303 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.753958 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.346623 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.402444 | no |
| Pileal_Stipeal_center | YFB_veil | 0.776605 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.493038 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.507062 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.114271 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.654120 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.618905 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.304208 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.857613 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.009123 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.003365 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.054982 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.808997 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.907652 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.944848 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.789460 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.083843 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.006032 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.150034 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.920251 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.870791 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.034142 | yes |
| DIF_stipe_center | YFB_stipe_center | 0.658639 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.243427 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.936725 | no |
| DIF_stipe_center | YFB_cap_skin | 0.216986 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.042475 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.058732 | no |
| DIF_stipe_center | YFB_veil | 0.229477 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.561898 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.921415 | no |
| DIF_stipe_center | DIF_cap_skin | 0.141124 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.035076 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.003765 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.941994 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.722449 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.662908 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.034837 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.004928 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.005671 | yes |
| DIF_stipe_shell | YFB_veil | 0.039836 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.441367 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.021056 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.003765 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.066767 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.528107 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.165164 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.842728 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.323512 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.081756 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.105864 | no |
| DIF_stipe_skin | YFB_veil | 0.348395 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.221377 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.069013 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.745010 | no |
| DIF_cap_skin | YFB_stipe_center | 0.023415 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.005302 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.090997 | no |
| DIF_cap_skin | YFB_cap_skin | 0.911320 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.805790 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.851688 | no |
| DIF_cap_skin | YFB_veil | 0.895824 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.759663 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.990426 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.001140 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.021583 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.617596 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.970196 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.935804 | no |
| DIF_cap_tissue | YFB_veil | 0.593603 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|079100 MYLDSLAIIIAFARILSASFLNQIPFPAPPPNGDIHLAINPTCGQLSGDTADINAGIDKHSIKTIISFGDSYTDG GKSDGSPLDPPILVFPNPLAGGRSTNGLTWVENVANDLNATIKDYAQAGACIDLKLWPSNPRKIDFLGQMKTFLG QNNALDPNTTLYSIFFGINDYLASLIDGDHLTEAAQVLLDQIKILASPPTNARKFMVLDVYGRGTTIPSGETFKQ IIYSGLSSFRVNGIQIINDDKHQPQRVTLDISYINFANIWKGVLGPNPGFEKFGYVSEDACTKCTAELGCTTIGM CDDPEHYFYWIPGHPSKETMRIMADYVREVWDQCGV* |
| Coding | >AgabiH97|079100 ATGTATCTCGACTCCCTCGCCATTATCATTGCCTTTGCTCGTATCCTCTCCGCCTCTTTTCTCAACCAAATTCCA TTCCCAGCACCCCCTCCAAACGGCGACATCCATCTCGCCATCAATCCAACCTGTGGTCAACTTTCTGGCGACACT GCAGATATCAATGCTGGTATAGACAAACACTCAATCAAGACCATAATCTCGTTCGGAGACAGTTACACCGACGGT GGTAAATCCGACGGATCACCACTCGATCCTCCTATCCTAGTCTTCCCCAATCCTCTCGCAGGTGGCAGATCCACC AACGGCCTAACCTGGGTCGAGAACGTTGCAAACGACCTTAACGCAACCATCAAAGACTACGCACAAGCTGGAGCT TGTATTGATTTGAAATTATGGCCTAGTAACCCGCGTAAAATTGATTTTCTTGGTCAAATGAAGACTTTTCTTGGA CAGAATAACGCTTTAGATCCCAATACCACACTATACAGTATATTTTTCGGAATCAACGACTATCTCGCCTCACTC ATTGACGGCGATCATTTGACCGAAGCAGCACAAGTCCTCCTTGACCAAATCAAGATTCTAGCTTCTCCACCTACA AACGCTCGTAAATTCATGGTTTTAGACGTTTACGGTCGAGGAACAACTATTCCTTCTGGTGAAACTTTCAAACAA ATCATTTATTCTGGTTTAAGTTCTTTTCGAGTCAATGGTATCCAAATCATCAATGACGACAAACATCAACCTCAA CGTGTGACTCTGGATATCTCATATATCAACTTTGCTAATATATGGAAGGGAGTTCTTGGTCCTAATCCTGGGTTT GAGAAATTTGGATATGTGAGTGAGGACGCGTGTACGAAGTGTACGGCAGAGTTGGGGTGTACGACTATTGGGATG TGTGATGATCCTGAACATTATTTTTATTGGATTCCTGGACATCCGTCGAAGGAGACTATGAGGATTATGGCGGAT TATGTGAGGGAGGTTTGGGATCAATGTGGAGTCTAG |
| Transcript | >AgabiH97|079100 ATGTATCTCGACTCCCTCGCCATTATCATTGCCTTTGCTCGTATCCTCTCCGCCTCTTTTCTCAACCAAATTCCA TTCCCAGCACCCCCTCCAAACGGCGACATCCATCTCGCCATCAATCCAACCTGTGGTCAACTTTCTGGCGACACT GCAGATATCAATGCTGGTATAGACAAACACTCAATCAAGACCATAATCTCGTTCGGAGACAGTTACACCGACGGT GGTAAATCCGACGGATCACCACTCGATCCTCCTATCCTAGTCTTCCCCAATCCTCTCGCAGGTGGCAGATCCACC AACGGCCTAACCTGGGTCGAGAACGTTGCAAACGACCTTAACGCAACCATCAAAGACTACGCACAAGCTGGAGCT TGTATTGATTTGAAATTATGGCCTAGTAACCCGCGTAAAATTGATTTTCTTGGTCAAATGAAGACTTTTCTTGGA CAGAATAACGCTTTAGATCCCAATACCACACTATACAGTATATTTTTCGGAATCAACGACTATCTCGCCTCACTC ATTGACGGCGATCATTTGACCGAAGCAGCACAAGTCCTCCTTGACCAAATCAAGATTCTAGCTTCTCCACCTACA AACGCTCGTAAATTCATGGTTTTAGACGTTTACGGTCGAGGAACAACTATTCCTTCTGGTGAAACTTTCAAACAA ATCATTTATTCTGGTTTAAGTTCTTTTCGAGTCAATGGTATCCAAATCATCAATGACGACAAACATCAACCTCAA CGTGTGACTCTGGATATCTCATATATCAACTTTGCTAATATATGGAAGGGAGTTCTTGGTCCTAATCCTGGGTTT GAGAAATTTGGATATGTGAGTGAGGACGCGTGTACGAAGTGTACGGCAGAGTTGGGGTGTACGACTATTGGGATG TGTGATGATCCTGAACATTATTTTTATTGGATTCCTGGACATCCGTCGAAGGAGACTATGAGGATTATGGCGGAT TATGTGAGGGAGGTTTGGGATCAATGTGGAGTCTAG |
| Gene | >AgabiH97|079100 ATGTATCTCGACTCCCTCGCCATTATCATTGCCTTTGCTCGTATCCTCTCCGCCTCTTTTCTCAACCAAATTCCA TTCCCAGCACCCCCTCCAAACGGCGACATCCATCTCGCCATCAATCCAACCTGTGGTCAACTTTCTGGCGACACT GCAGATATCAATGCTGGTATAGACAAACACTCAATCAAGACCATAATCTCGTTCGGAGCAAGTTCATTATTTCCT ACAAACAACCGTCTCTCAACGTTAGACAGGACAGTTACACCGACGGTGGTAAATCCGACGGATCACCACTCGATC CTCCTATCCTAGTCTTCCCCAATCCTCTCGCAGGTGGCAGATCCACCAACGGCCTAACCTGGGTCGAGAACGTTG CAAACGACCTTAACGCAACCATCAAAGACTACGCAGTCAGTTTTTCTTCTTTCACGATATTCTTAGAAATTACTG AATTGCTAGATATAGCAAGCTGGAGCTTGTATTGATTTGAAATTATGGCCTAGTAACCCGCGTAAAATTGATTTT CTTGGTCAAAGTAAGAGAAACGCGAGTTTGAGATGTTTATGTGCTGATGGATTGGTAGTGAAGACTTTTCTTGGA CAGAATAACGCTTTAGATCCCAATACCACACTATACAGTATATTTTTCGGAATCAAGTAAGTCTGCACACTCTTA CCTCTTCGTGTTTTTAAACTCAAGCTTTTTCAACATAGCGACTATCTCGCCTCACTCAGTCAGTCAAACCAAAAA ACAATTTCTTTTCTCAACTAAAATCTAAACCCTATTTACAGTTGACGGCGATCATTTGACCGAAGCAGCACAAGT CCTCCTTGACCAAATCAAGATTCTAGCTTCTCCACCTACAAACGCTCGTAAATTCATGGTTTTAGACGTTTACGG TCGAGGAACAACTATTCCTTCTGGTGAAACTTTCAAACAAATCATTTATTCTGGTTTAAGTTCTTTTCGAGTCAA TGGTATCCAAATCATCAATGACGACAAACATCAACCTCAACGTGTGACTCTGGATATCTCATATATCAACTTTGC TAATATATGGAAGGGAGTTCTTGGTCCTAATCCTGGGTTTGAGAAATTTGGATATGTGAGTGAGGACGCGTGTAC GAAGTGTACGGCAGAGTTGGGGTGTACGACTATTGGGATGTGTGATGATCCTGAACATTATTTTTATTGGATTCC TGGGTGAGTTTTTGCTATGAATATATATATATATATACGATGATGGTTGATGGTTTGGGATTTCAAAGACATCCG TCGAAGGAGACTATGAGGATTATGGCGGATTATGTGAGGGAGGTTTGGGATCAATGTGGAGTCTAG |