Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|079060
Gene name
Locationscaffold_5:222798..223987
Strand-
Gene length (bp)1189
Transcript length (bp)1140
Coding sequence length (bp)1140
Protein length (aa) 380

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00646 F-box F-box domain 1.2E-03 6 41
PF12937 F-box-like F-box-like 1.6E-05 4 45

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6752 0.4715 0.0869 0.0738 0.2962 0.0041 0.1305 0.2754 0.0946 0.013

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup8941
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|079060
Agaricus bisporus var bisporus H97 AgabiH97|079060 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|079060
MHHIQALPLELLGLIIESLSHERDALLQASLTCKVWRSICYRHLFSSVILNSRSLPPFFELLENQFTRTTIPLCV
RRLSIDFPAPTATTYFGWRECLTKILMHLSHVDRVAHLKLSNMCTTDGILSSVLASAFTNTNSLDLSNSTFGDPM
ALGHFLGAYPHLKQVVLRDVLCPIPYSASLSPLPPVGAYGLQISASVDFGFHASLKWCRTSEAKNLQQLGAVSFI
HPGNIHHVLNILAPFLNFLELLHPAQNVESQNSLPYEINLHNATHLRFLSLGFPDRVLGVMPWILRILHYLQGNS
LRGLRLSFSASQQFTLDIPFLKLLRQTLEKSQFRKLQSLQFFTFNTFGDEDVAKLVVKHVSESLDSWHEQGKLRF
AFPP*
Coding >AgabiH97|079060
ATGCACCATATTCAGGCGCTTCCACTCGAACTTCTGGGCCTCATTATTGAGTCCTTGTCACACGAGAGGGATGCC
CTCCTTCAGGCCAGCTTGACGTGTAAAGTCTGGCGTTCTATCTGCTACCGCCACTTGTTTTCATCTGTCATTTTG
AACTCGCGGTCTTTACCGCCTTTCTTTGAGCTCTTGGAGAATCAATTCACACGTACTACTATCCCTTTATGCGTT
CGCCGATTGTCCATCGACTTCCCAGCCCCAACCGCCACTACATACTTTGGTTGGCGCGAGTGCTTGACCAAAATA
CTGATGCACTTGTCCCATGTCGATCGCGTTGCGCATCTCAAGCTCTCGAATATGTGTACAACAGACGGCATACTG
TCCTCTGTGCTGGCTTCTGCTTTTACCAATACCAACTCGCTCGATCTTTCCAATTCTACCTTCGGTGATCCTATG
GCACTAGGGCACTTCCTCGGTGCTTATCCTCATCTCAAACAAGTCGTATTGAGGGATGTTCTCTGCCCAATCCCT
TACTCAGCGTCCCTCTCCCCTCTACCCCCGGTAGGCGCTTATGGACTACAAATCTCGGCGTCCGTTGATTTCGGG
TTCCATGCCAGCCTAAAATGGTGTCGAACCTCAGAGGCTAAGAACTTACAACAATTGGGTGCTGTATCTTTCATA
CACCCGGGCAACATTCATCACGTATTGAATATCCTTGCTCCTTTCTTAAACTTCTTGGAGTTACTGCACCCAGCA
CAAAATGTGGAGTCACAAAACTCCCTCCCGTATGAAATAAATCTCCATAATGCTACACATCTTCGGTTCCTTAGT
CTGGGCTTCCCAGATCGTGTCCTCGGTGTCATGCCATGGATTCTTCGCATATTACATTATCTTCAAGGAAATTCG
CTACGTGGGTTACGGTTATCTTTTTCCGCTTCCCAACAATTCACCCTCGACATACCCTTTCTCAAACTCCTCCGC
CAAACATTGGAAAAGTCTCAATTCCGAAAGTTGCAAAGTCTCCAGTTCTTCACCTTCAATACGTTCGGCGATGAA
GATGTTGCCAAGCTTGTTGTCAAGCACGTGAGCGAGTCGCTGGACAGTTGGCACGAGCAAGGCAAATTGAGATTT
GCCTTTCCGCCATGA
Transcript >AgabiH97|079060
ATGCACCATATTCAGGCGCTTCCACTCGAACTTCTGGGCCTCATTATTGAGTCCTTGTCACACGAGAGGGATGCC
CTCCTTCAGGCCAGCTTGACGTGTAAAGTCTGGCGTTCTATCTGCTACCGCCACTTGTTTTCATCTGTCATTTTG
AACTCGCGGTCTTTACCGCCTTTCTTTGAGCTCTTGGAGAATCAATTCACACGTACTACTATCCCTTTATGCGTT
CGCCGATTGTCCATCGACTTCCCAGCCCCAACCGCCACTACATACTTTGGTTGGCGCGAGTGCTTGACCAAAATA
CTGATGCACTTGTCCCATGTCGATCGCGTTGCGCATCTCAAGCTCTCGAATATGTGTACAACAGACGGCATACTG
TCCTCTGTGCTGGCTTCTGCTTTTACCAATACCAACTCGCTCGATCTTTCCAATTCTACCTTCGGTGATCCTATG
GCACTAGGGCACTTCCTCGGTGCTTATCCTCATCTCAAACAAGTCGTATTGAGGGATGTTCTCTGCCCAATCCCT
TACTCAGCGTCCCTCTCCCCTCTACCCCCGGTAGGCGCTTATGGACTACAAATCTCGGCGTCCGTTGATTTCGGG
TTCCATGCCAGCCTAAAATGGTGTCGAACCTCAGAGGCTAAGAACTTACAACAATTGGGTGCTGTATCTTTCATA
CACCCGGGCAACATTCATCACGTATTGAATATCCTTGCTCCTTTCTTAAACTTCTTGGAGTTACTGCACCCAGCA
CAAAATGTGGAGTCACAAAACTCCCTCCCGTATGAAATAAATCTCCATAATGCTACACATCTTCGGTTCCTTAGT
CTGGGCTTCCCAGATCGTGTCCTCGGTGTCATGCCATGGATTCTTCGCATATTACATTATCTTCAAGGAAATTCG
CTACGTGGGTTACGGTTATCTTTTTCCGCTTCCCAACAATTCACCCTCGACATACCCTTTCTCAAACTCCTCCGC
CAAACATTGGAAAAGTCTCAATTCCGAAAGTTGCAAAGTCTCCAGTTCTTCACCTTCAATACGTTCGGCGATGAA
GATGTTGCCAAGCTTGTTGTCAAGCACGTGAGCGAGTCGCTGGACAGTTGGCACGAGCAAGGCAAATTGAGATTT
GCCTTTCCGCCATGA
Gene >AgabiH97|079060
ATGCACCATATTCAGGCGCTTCCACTCGAACTTCTGGGCCTCATTATTGAGTCCTTGTCACACGAGAGGGATGCC
CTCCTTCAGGCCAGCTTGACGTGTAAAGTCTGGCGTTCTATCTGCTACCGCCACTTGTTTTCATCTGTCATTTTG
AACTCGCGGTCTTTACCGCCTTTCTTTGAGCTCTTGGAGAATCAATTCACACGTACTACTATCCCTTTATGCGTT
CGCCGATTGTCCATCGACTTCCCAGCCCCAACCGCCACTACATACTTTGGTTGGCGCGAGTGCTTGACCAAAATA
CTGATGCACTTGTCCCATGTCGATCGCGTTGCGCATCTCAAGCTCTCGAATATGTGTACAACAGACGGCATACTG
TCCTCTGTGCTGGCTTCTGCTTTTACCAATACCAACTCGCTCGATCTTTCCAATTCTACCTTCGGTGATCCTATG
GCACTAGGGCACTTCCTCGGTGCTTATCCTCATCTCAAACAAGTCGTATTGAGGGATGTTCTCTGCCCAATCCCT
TACTCAGCGTCCCTCTCCCCTCTACCCCCGGTAGGCGCTTATGGACTACAAATCTCGGCGTCCGTTGATTTCGGG
TTCCATGCCAGCCTAAAATGGTGTCGAACCTCAGAGGCTAAGAACTTACAACAATTGGGTGCTGTATCTTTCATA
CACCCGGGCAACATTCATCACGTATTGAATATCCTTGCTCCTTTCTTAAACTTCTTGGAGTTACTGCACCCAGCA
CAAAGTGCGTGATATCCTCCAAATTCAGCTTACAAGCAAATGACAATTGACAGATGTGGAGTCACAAAACTCCCT
CCCGTATGAAATAAATCTCCATAATGCTACACATCTTCGGTTCCTTAGTCTGGGCTTCCCAGATCGTGTCCTCGG
TGTCATGCCATGGATTCTTCGCATATTACATTATCTTCAAGGAAATTCGCTACGTGGGTTACGGTTATCTTTTTC
CGCTTCCCAACAATTCACCCTCGACATACCCTTTCTCAAACTCCTCCGCCAAACATTGGAAAAGTCTCAATTCCG
AAAGTTGCAAAGTCTCCAGTTCTTCACCTTCAATACGTTCGGCGATGAAGATGTTGCCAAGCTTGTTGTCAAGCA
CGTGAGCGAGTCGCTGGACAGTTGGCACGAGCAAGGCAAATTGAGATTTGCCTTTCCGCCATGA

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