Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|077810
Gene name
Location	scaffold_4:2998003..2998716
Strand	+
Gene length (bp)	713
Transcript length (bp)	570
Coding sequence length (bp)	570
Protein length (aa)	190

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14615	Rsa3	Ribosome-assembly protein 3	3.2E-16	131	176

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 14	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|077810 MPPAKAANSAPRKRIRKRKRRAASSSSSSSSSDSSSDEDDSPPKIVRTVPKIVDENSGDSESESDSSDSTSSSEA SSHKNATTTKSASPSKPTEIRRSPSPSPPPTDIPSFLPSRNDPSTEEKEREMKEKFRKFWMTSVAEGFRDDLEEL RKESNLGTGRLALLIDSLASGAEIFSSSKHATQCSACTL*
Coding	>AgabiH97\|077810 ATGCCTCCCGCCAAGGCCGCGAATTCAGCGCCCAGAAAACGGATACGAAAACGCAAACGACGAGCTGCGTCGTCT TCCAGCTCATCTTCCAGCTCAGACTCATCTTCAGATGAAGACGACTCCCCGCCAAAAATTGTCAGAACGGTACCA AAAATAGTGGACGAAAACTCGGGGGATTCAGAGTCAGAGTCAGATTCCTCGGATTCAACTTCGAGTTCAGAAGCT TCTTCACACAAGAATGCAACTACGACAAAATCAGCTTCTCCTTCAAAGCCAACAGAAATACGTCGATCACCTTCA CCCTCTCCACCTCCTACAGATATTCCTTCATTTTTACCCTCACGGAACGATCCTAGTACGGAGGAAAAGGAGAGA GAAATGAAGGAGAAGTTTAGAAAATTTTGGATGACTTCTGTTGCCGAAGGATTTCGTGATGACCTCGAAGAACTG CGCAAGGAATCTAACCTTGGAACTGGTCGTCTAGCGCTCCTTATAGATTCGCTGGCATCAGGCGCGGAAATTTTC TCGTCTTCAAAACACGCTACGCAGTGTTCCGCATGTACGCTTTGA
Transcript	>AgabiH97\|077810 ATGCCTCCCGCCAAGGCCGCGAATTCAGCGCCCAGAAAACGGATACGAAAACGCAAACGACGAGCTGCGTCGTCT TCCAGCTCATCTTCCAGCTCAGACTCATCTTCAGATGAAGACGACTCCCCGCCAAAAATTGTCAGAACGGTACCA AAAATAGTGGACGAAAACTCGGGGGATTCAGAGTCAGAGTCAGATTCCTCGGATTCAACTTCGAGTTCAGAAGCT TCTTCACACAAGAATGCAACTACGACAAAATCAGCTTCTCCTTCAAAGCCAACAGAAATACGTCGATCACCTTCA CCCTCTCCACCTCCTACAGATATTCCTTCATTTTTACCCTCACGGAACGATCCTAGTACGGAGGAAAAGGAGAGA GAAATGAAGGAGAAGTTTAGAAAATTTTGGATGACTTCTGTTGCCGAAGGATTTCGTGATGACCTCGAAGAACTG CGCAAGGAATCTAACCTTGGAACTGGTCGTCTAGCGCTCCTTATAGATTCGCTGGCATCAGGCGCGGAAATTTTC TCGTCTTCAAAACACGCTACGCAGTGTTCCGCATGTACGCTTTGA
Gene	>AgabiH97\|077810 ATGCCTCCCGCCAAGGCCGCGAATTCAGCGCCCAGAAAACGGATACGAAAACGCAAACGACGAGCTGCGTCGTCT TCCAGCTCATCTTCCAGCTCAGACTCATCTTCAGATGAAGACGACTCCCCGCCAAAAATTGTCAGAACGGTACCA AAAATAGTGGACGAAAACTCGGGGGATTCAGAGTCAGAGTCAGATTCCTCGGATTCAACTTCGAGTTCAGAAGCT TCTTCACACAAGAATGCAACTACGACAAAATCAGCTTCTCCTTCAAAGCCAACAGAAATACGTCGATCACCTTCA CCCTCTCCACCTCCTACAGATATTCCTTCATTTTTACCCTCACGGAACGATCCTAGTACGGAGGAAAAGGAGAGA GAAATGAAGGAGAAGTTTAGAAAATTTTGGATGACTTCTGTTGCCGAAGGATTTCGTGATGACCTCGAAGAACTG CGCAAGGTCCTCTCTTAACTCTTCTCGTCGATTTCTCTGTTACTTATGCTTCCTCAGGAATCTAACCTTGGAACT GGTCGTCTAGCGCTCCTTATAGATTCGCTGGCATCAGGCGCGGAAATTTTCTCGTCTTCAAAACACGGTGATGAC ACCGAGATGGATATTGTGATGGCCCCATAACAGCTACGCAGTAAGTTCTTTCCTATCCTTCTATATACTGGCGGT ACTAAGATGCGGGCAGGTGTTCCGCATGTACGCTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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