© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|076420 |
| Gene name | |
| Location | scaffold_4:2610044..2611024 |
| Strand | - |
| Gene length (bp) | 980 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20520 | Ac45-VOA1_TM | V0 complex accessory subunit Ac45/VOA1 transmembrane domain | 9.3E-07 | 222 | 259 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 230 | 252 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 153.26 | 90.31 | 216.21 |
| Initials | Initials knots | 122.15 | 73.08 | 171.22 |
| Pileal_Stipeal_center | Stage I stipe center | 231.82 | 138.31 | 325.33 |
| Pileal_Stipeal_shell | Stage I stipe shell | 271.36 | 160.70 | 382.03 |
| DIF_stipe_center | Stage II stipe center | 225.02 | 134.99 | 315.06 |
| DIF_stipe_shell | Stage II stipe shell | 227.15 | 136.18 | 318.12 |
| DIF_stipe_skin | Stage II stipe skin | 220.70 | 132.37 | 309.04 |
| DIF_cap_skin | Stage II cap skin | 314.73 | 185.94 | 443.53 |
| DIF_cap_tissue | Stage II cap tissue | 294.52 | 174.99 | 414.04 |
| DIF_gill_tissue | Stage II gill tissue | 294.24 | 174.71 | 413.76 |
| YFB_stipe_center | Young fruiting body stipe center | 230.30 | 137.92 | 322.67 |
| YFB_stipe_shell | Young fruiting body stipe shell | 218.74 | 131.43 | 306.06 |
| YFB_stipe_skin | Young fruiting body stipe skin | 223.28 | 133.51 | 313.05 |
| YFB_cap_skin | Young fruiting body cap skin | 318.41 | 187.58 | 449.24 |
| YFB_cap_tissue | Young fruiting body cap tissue | 270.50 | 161.53 | 379.47 |
| YFB_gill_tissue | Young fruiting body gill tissue | 300.30 | 178.00 | 422.59 |
| YFB_veil | Young fruiting body veil | 314.52 | 184.84 | 444.20 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.012577 | yes |
| Casing | YFB_stipe_center | 0.167754 | no |
| Casing | YFB_stipe_shell | 0.239956 | no |
| Casing | YFB_stipe_skin | 0.207757 | no |
| Casing | YFB_cap_skin | 0.003365 | yes |
| Casing | YFB_cap_tissue | 0.032978 | yes |
| Casing | YFB_gill_tissue | 0.009123 | yes |
| Casing | YFB_veil | 0.004160 | yes |
| Casing | Initials | 0.527706 | no |
| Casing | Pileal_Stipeal_center | 0.161568 | no |
| Casing | Pileal_Stipeal_shell | 0.036455 | yes |
| Casing | DIF_stipe_center | 0.196516 | no |
| Casing | DIF_stipe_shell | 0.179329 | no |
| Casing | DIF_stipe_skin | 0.217538 | no |
| Casing | DIF_cap_skin | 0.004160 | yes |
| Casing | DIF_cap_tissue | 0.014956 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.480687 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.350907 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.405670 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.874152 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.863128 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.969357 | no |
| DIF_gill_tissue | YFB_veil | 0.895720 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.922276 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.954708 | no |
| YFB_stipe_center | YFB_cap_skin | 0.311274 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.689779 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.425977 | no |
| YFB_stipe_center | YFB_veil | 0.337682 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.970431 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.202921 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.558044 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.303559 | no |
| YFB_stipe_shell | YFB_veil | 0.231439 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.248019 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.616542 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.356206 | no |
| YFB_stipe_skin | YFB_veil | 0.276817 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.692364 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.910762 | no |
| YFB_cap_skin | YFB_veil | 0.982660 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.817443 | no |
| YFB_cap_tissue | YFB_veil | 0.716416 | no |
| YFB_gill_tissue | YFB_veil | 0.929074 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.014374 | yes |
| Initials | YFB_stipe_shell | 0.022631 | yes |
| Initials | YFB_stipe_skin | 0.018896 | yes |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.001625 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.013485 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.015529 | yes |
| Initials | DIF_stipe_shell | 0.013782 | yes |
| Initials | DIF_stipe_skin | 0.017507 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.500912 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.989426 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.911334 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.943952 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.326760 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.708733 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.444068 | no |
| Pileal_Stipeal_center | YFB_veil | 0.357287 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.701474 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.955762 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.969549 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.924330 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.353184 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.498420 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.869723 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.684836 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.551514 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.608341 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.703737 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.994560 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.827940 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.731058 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.622172 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.647894 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.571826 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.729853 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.869070 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.416662 | no |
| DIF_stipe_center | YFB_stipe_center | 0.964692 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.958901 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.988198 | no |
| DIF_stipe_center | YFB_cap_skin | 0.255586 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.629415 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.363938 | no |
| DIF_stipe_center | YFB_veil | 0.284650 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.985394 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.970544 | no |
| DIF_stipe_center | DIF_cap_skin | 0.280162 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.412372 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.436337 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.978944 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.943432 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.974704 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.271262 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.650717 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.381253 | no |
| DIF_stipe_shell | YFB_veil | 0.298507 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.956593 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.294650 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.431188 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.373826 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.935269 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.986715 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.982343 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.217865 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.581008 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.319685 | no |
| DIF_stipe_skin | YFB_veil | 0.246388 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.241143 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.368152 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.895298 | no |
| DIF_cap_skin | YFB_stipe_center | 0.332623 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.229801 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.268064 | no |
| DIF_cap_skin | YFB_cap_skin | 0.983274 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.718717 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.929458 | no |
| DIF_cap_skin | YFB_veil | 0.998811 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.897873 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.998252 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.478659 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.353791 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.402994 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.876301 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.860405 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.970308 | no |
| DIF_cap_tissue | YFB_veil | 0.896801 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|076420 MMAAKRFLVALVSATFAFADTSLVAWSSSGSTALDALPPSLTTSKFTNHILNNDQLCDFDAIVLIDQPGDHRNGL SSHVISRSISSAPSARSFKLSGSFNLPVTAESLSSRCNARFLSYTPGPSSSGDVSLEEGQKHVLCLKMPENADIE KHEASLAAELSTISSIFPSHFIIYTGPGLSNLHIRQSPETPPRPTIETTTNTSQIPVNNPTASITDVNTTVYFTT GLITALLLVFFILLPVLFIGVGALASIQTPIRMDAPKGYSAVERKNQ* |
| Coding | >AgabiH97|076420 ATGATGGCTGCCAAACGATTCCTCGTCGCCCTCGTCTCTGCAACTTTTGCCTTTGCGGACACTTCTCTCGTTGCT TGGTCTTCTTCAGGGTCGACTGCGCTCGATGCGCTTCCACCATCTCTCACGACGTCCAAGTTCACCAATCACATC CTAAACAACGACCAATTATGTGATTTTGACGCTATCGTCCTCATTGACCAACCAGGAGACCACCGCAATGGGCTT TCATCCCATGTCATCTCGCGCAGCATCTCTTCAGCACCCTCAGCACGCTCTTTCAAATTATCCGGTTCTTTCAAT TTACCAGTTACAGCTGAAAGTCTTTCGTCCCGCTGTAACGCCCGTTTCTTGAGTTACACACCTGGACCGTCATCA TCGGGTGACGTTTCACTCGAGGAAGGCCAGAAACACGTCTTGTGCTTGAAAATGCCCGAGAACGCTGATATTGAA AAACACGAAGCTTCACTTGCAGCAGAGCTTTCGACCATTTCATCCATCTTCCCTTCCCACTTCATCATCTACACC GGTCCTGGCCTCTCAAACCTCCACATCCGTCAATCTCCAGAAACACCCCCTCGTCCAACCATAGAAACCACCACC AACACTTCTCAAATACCCGTCAACAACCCCACTGCCTCCATTACAGATGTCAACACCACTGTATACTTCACAACC GGCTTGATTACCGCTCTCCTCCTCGTTTTCTTCATTCTCCTCCCTGTTCTATTCATCGGTGTTGGAGCTTTGGCT AGTATCCAAACACCCATTCGTATGGACGCTCCAAAGGGTTATAGTGCAGTTGAGAGAAAGAACCAATAG |
| Transcript | >AgabiH97|076420 ATGATGGCTGCCAAACGATTCCTCGTCGCCCTCGTCTCTGCAACTTTTGCCTTTGCGGACACTTCTCTCGTTGCT TGGTCTTCTTCAGGGTCGACTGCGCTCGATGCGCTTCCACCATCTCTCACGACGTCCAAGTTCACCAATCACATC CTAAACAACGACCAATTATGTGATTTTGACGCTATCGTCCTCATTGACCAACCAGGAGACCACCGCAATGGGCTT TCATCCCATGTCATCTCGCGCAGCATCTCTTCAGCACCCTCAGCACGCTCTTTCAAATTATCCGGTTCTTTCAAT TTACCAGTTACAGCTGAAAGTCTTTCGTCCCGCTGTAACGCCCGTTTCTTGAGTTACACACCTGGACCGTCATCA TCGGGTGACGTTTCACTCGAGGAAGGCCAGAAACACGTCTTGTGCTTGAAAATGCCCGAGAACGCTGATATTGAA AAACACGAAGCTTCACTTGCAGCAGAGCTTTCGACCATTTCATCCATCTTCCCTTCCCACTTCATCATCTACACC GGTCCTGGCCTCTCAAACCTCCACATCCGTCAATCTCCAGAAACACCCCCTCGTCCAACCATAGAAACCACCACC AACACTTCTCAAATACCCGTCAACAACCCCACTGCCTCCATTACAGATGTCAACACCACTGTATACTTCACAACC GGCTTGATTACCGCTCTCCTCCTCGTTTTCTTCATTCTCCTCCCTGTTCTATTCATCGGTGTTGGAGCTTTGGCT AGTATCCAAACACCCATTCGTATGGACGCTCCAAAGGGTTATAGTGCAGTTGAGAGAAAGAACCAATAG |
| Gene | >AgabiH97|076420 ATGATGGCTGCCAAACGATTCCTCGTCGCCCTCGTCTCTGCAACTTTTGCCTTTGCGGACACTTCTCTCGTTGCT TGGTCTTCTTCAGGGTAATATTCAGTTTGTAAGTTGGGTGATATGGCTAACGAAAAGTAGGTCGACTGCGCTCGA TGCGCTTCCACCATCTCTCACGACGTCCAAGTTCACCAATCACATCCTAAACAACGACCAATTATGTGATTTTGA CGCTATCGTCCTCATTGACCAACCAGGAGTACGTCTCCTCATTGTATCTTATCACAAGCATGTTTCCTAAGTTGA ACTTTCGTCTTCTTCAGGACCACCGCAATGGGCTTTCATCCCATGTCATCTCGCGCAGCATCTCTTCAGCACCCT CAGCACGCTCTTTCAAATTATCCGGTTCTTTCAATTTACCAGTTACAGCTGAAAGTCTTTCGTCCCGCTGTAACG CCCGTTTCTTGAGTTACACACCTGGACCGTCATCATCGGGTGACGTTTCACTCGAGGAAGGCCAGAAACACGTCT TGTGCTTGAAAATGCCCGAGAACGCTGATATTGAAAAACACGGTAGTTAATTTTTCACTGTTTGACTGAAACGAA TTGAACCGGTTCCTTTAGAAGCTTCACTTGCAGCAGAGCTTTCGACCATTTCATCCATCTTCCCTTCCCACTTCA TCATCTACACCGGTCCTGGCCTCTCAAACCTCCACATCCGTCAATCTCCAGAAACACCCCCTCGTCCAACCATAG AAACCACCACCAACACTTCTCAAATACCCGTCAACAACCCCACTGCCTCCATTACAGATGTCAACACCACTGTAT ACTTCACAACCGGCTTGATTACCGCTCTCCTCCTCGTTTTCTTCATTCTCCTCCCTGTTCTATTCATCGGTGTTG GAGCTTTGGCTAGTATCCAAACACCCATTCGTATGGACGCTCCAAAGGGTTATAGTGCAGTTGAGAGAAAGAACC AATAG |