Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|076160
Gene name
Location	scaffold_4:2548291..2550784
Strand	+
Gene length (bp)	2493
Transcript length (bp)	2493
Coding sequence length (bp)	2493
Protein length (aa)	831

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00665	rve	Integrase core domain	6.1E-11	731	824
PF13976	gag_pre-integrs	GAG-pre-integrase domain	7.9E-09	672	715
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	4.3E-08	2	113

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|P10978|POLX_TOBAC	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1	521	822	8.0E-16

GO

GO Term	Description	Terminal node
GO:0015074	DNA integration	Yes
GO:0008150	biological_process	No
GO:0006259	DNA metabolic process	No
GO:0044238	primary metabolic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0009987	cellular process	No
GO:0071704	organic substance metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0008152	metabolic process	No
GO:0046483	heterocycle metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0044260	cellular macromolecule metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 13	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|076160 MLSQAAAQTDARALWNWLEGQYGQKGPTFAYERFITAQNFKINDSADPSSAIADLYALFAAVESTGALIHESIRT MMLLNALPNWFEHVAANILAEKRSVADLKWEETCARIIAVWRNPHTVANAACFRQQNQPKPRWDNKKPNQGQGKS QGSGSGSGSGQNQNKQQQPQQKKEGEEQSNDKKKKRTRSRKKKQGNEASTTSIEEVKDTTPDYSASSAIASMAQL ASTSTCTKVNEMKSRFVPLPSRSDPNLTRNRSPKLGNHTISGEEFFFFPDGNMIDLSPLDTDIDSSTLPRLCPAT RNLLLDESDVDLDPSDSGLIPRDPRKRLSPRHSPMPYERAKSKVLSLWDQRLNAVTVTAPPIEDGAGQVGGNAPA VKMPATKGKLVEKMDVDKADEISLSDEDGEFEYEYDVECEPDSFAQVPRFSPISQINSWILQGSIVSRDKGLVEP AYLRERSGRSLWLQLGSSSTATPVLYNMIANETTSLSSLLDRMNPICEVLHACHSNCEGCKTRKNLEKHSWLLDS GASCHFTPNLEDFAHLQCGNFGIVHTANKDSVLKIQGRGHVLIEHTVKDISTGKEFKSVSKIWPVFYVNGMNHRL LSTAQLLKSGLKLESTKDGSVFKNEAGQAILSARPEGLFGGMHIVECTFLKHSKTEPYLLNASGILQLPDYTIWH CRLGHPSDNVLKKFFEETLGVPKINIPQQKPVCDGCVRGKLTQQSFPQSEKCATSVLELVHLDLFELPVPSYHKY KWVMTLLDDYSGLAQIVMITKKSDAALQLINILKQLATQSDQKIKRLRTDQGGEYVNDTLSTYLKSQGIVHELSH QEKVK*
Coding	>AgabiH97|076160 ATGCTCAGTCAAGCGGCCGCTCAAACGGATGCTAGAGCTCTTTGGAATTGGTTGGAAGGCCAATATGGCCAAAAA GGACCAACGTTCGCCTATGAACGTTTTATTACAGCTCAAAATTTCAAGATAAATGACTCCGCCGATCCATCATCT GCGATTGCAGATCTCTACGCATTATTTGCCGCTGTCGAAAGCACTGGTGCGTTGATACATGAGTCGATCCGCACT ATGATGCTCCTCAACGCTCTCCCCAACTGGTTCGAGCATGTTGCTGCAAACATTCTTGCTGAGAAAAGGTCGGTT GCCGATCTTAAATGGGAGGAAACTTGTGCCCGCATTATTGCTGTGTGGCGCAACCCCCATACAGTTGCCAATGCT GCGTGCTTCCGCCAGCAGAACCAGCCTAAACCCAGATGGGACAATAAAAAGCCCAATCAAGGGCAAGGCAAGTCC CAAGGCTCTGGTTCCGGTTCTGGCTCCGGCCAGAACCAAAACAAGCAACAACAACCTCAGCAGAAGAAGGAAGGT GAAGAGCAGAGTAACGACAAAAAGAAGAAGAGAACCCGCTCCCGTAAAAAGAAGCAGGGTAACGAGGCTTCTACC ACCTCTATCGAAGAAGTCAAGGATACGACTCCTGACTACTCCGCTTCTTCTGCCATTGCTTCAATGGCGCAGCTC GCATCCACCTCTACATGCACAAAAGTCAATGAGATGAAGAGCAGGTTCGTCCCGCTTCCATCTAGATCAGATCCT AATCTAACAAGGAATAGATCGCCCAAGTTGGGCAACCATACCATTTCGGGTGAGGAATTCTTTTTCTTCCCTGAT GGAAATATGATTGATCTTTCCCCACTGGATACTGACATTGACTCCTCGACTTTGCCTCGACTTTGTCCTGCGACG CGAAATCTCCTTCTGGACGAATCTGATGTTGATCTTGATCCATCAGACTCCGGGTTGATCCCTCGGGACCCTCGG AAACGTCTTTCCCCTCGCCATTCCCCCATGCCCTACGAAAGGGCCAAATCGAAAGTGTTATCCCTCTGGGATCAA CGTCTTAACGCAGTGACTGTTACAGCCCCTCCAATTGAGGATGGGGCCGGTCAAGTGGGTGGTAATGCTCCGGCT GTAAAAATGCCGGCTACGAAGGGAAAACTAGTTGAGAAGATGGATGTTGACAAAGCAGATGAGATTTCTCTCAGC GATGAAGATGGAGAATTTGAATATGAGTATGATGTGGAATGCGAACCGGATAGCTTTGCGCAAGTCCCTCGCTTC TCTCCCATATCTCAGATTAACTCATGGATTCTACAGGGCAGTATTGTCTCCAGAGACAAAGGCTTGGTTGAACCA GCCTATCTCCGAGAAAGATCGGGCCGCTCTTTGTGGCTTCAATTAGGATCGTCGAGTACTGCTACACCTGTATTA TATAATATGATCGCAAATGAGACTACTTCTTTATCCTCTTTGCTTGATCGAATGAATCCAATATGTGAAGTTCTC CATGCCTGTCATTCAAATTGTGAGGGTTGCAAAACCCGAAAGAATCTAGAAAAACATAGTTGGTTGCTCGATAGT GGTGCTTCATGCCACTTCACACCGAACCTTGAGGATTTTGCACATTTACAATGTGGAAACTTCGGTATCGTGCAT ACTGCAAATAAAGACTCTGTACTCAAAATCCAGGGACGCGGACATGTCTTAATCGAGCATACCGTAAAAGATATC TCCACGGGAAAAGAATTTAAATCAGTATCAAAGATCTGGCCCGTGTTCTATGTCAACGGCATGAATCATAGACTT CTTTCAACTGCTCAGTTGTTGAAGTCTGGACTTAAACTAGAGTCTACAAAAGATGGATCTGTATTCAAAAACGAA GCAGGTCAAGCGATTCTTAGTGCCCGTCCGGAAGGTCTTTTTGGCGGCATGCACATTGTTGAGTGTACCTTCTTA AAACACTCCAAAACAGAACCATACTTGCTTAACGCAAGCGGAATACTCCAGCTCCCTGACTACACCATTTGGCAT TGTAGATTAGGTCATCCTTCTGATAATGTGTTGAAGAAATTCTTCGAGGAAACCCTAGGAGTACCGAAGATTAAT ATTCCACAACAGAAACCGGTTTGTGATGGTTGTGTTCGTGGCAAACTTACGCAACAATCATTTCCACAATCGGAA AAATGTGCTACTTCAGTACTCGAACTGGTCCACTTGGATCTATTCGAACTCCCTGTCCCCTCTTATCACAAATAC AAATGGGTGATGACTTTGCTTGACGACTATTCCGGTCTCGCTCAGATTGTCATGATAACCAAGAAAAGTGATGCC GCGTTACAGTTGATTAATATCCTAAAACAGTTGGCTACTCAATCTGATCAAAAGATCAAAAGATTGCGTACAGAT CAAGGAGGAGAGTATGTCAATGATACACTCTCGACATACCTGAAGTCACAAGGCATTGTGCATGAACTCTCACAT CAGGAAAAGGTAAAGTGA
Transcript	>AgabiH97|076160 ATGCTCAGTCAAGCGGCCGCTCAAACGGATGCTAGAGCTCTTTGGAATTGGTTGGAAGGCCAATATGGCCAAAAA GGACCAACGTTCGCCTATGAACGTTTTATTACAGCTCAAAATTTCAAGATAAATGACTCCGCCGATCCATCATCT GCGATTGCAGATCTCTACGCATTATTTGCCGCTGTCGAAAGCACTGGTGCGTTGATACATGAGTCGATCCGCACT ATGATGCTCCTCAACGCTCTCCCCAACTGGTTCGAGCATGTTGCTGCAAACATTCTTGCTGAGAAAAGGTCGGTT GCCGATCTTAAATGGGAGGAAACTTGTGCCCGCATTATTGCTGTGTGGCGCAACCCCCATACAGTTGCCAATGCT GCGTGCTTCCGCCAGCAGAACCAGCCTAAACCCAGATGGGACAATAAAAAGCCCAATCAAGGGCAAGGCAAGTCC CAAGGCTCTGGTTCCGGTTCTGGCTCCGGCCAGAACCAAAACAAGCAACAACAACCTCAGCAGAAGAAGGAAGGT GAAGAGCAGAGTAACGACAAAAAGAAGAAGAGAACCCGCTCCCGTAAAAAGAAGCAGGGTAACGAGGCTTCTACC ACCTCTATCGAAGAAGTCAAGGATACGACTCCTGACTACTCCGCTTCTTCTGCCATTGCTTCAATGGCGCAGCTC GCATCCACCTCTACATGCACAAAAGTCAATGAGATGAAGAGCAGGTTCGTCCCGCTTCCATCTAGATCAGATCCT AATCTAACAAGGAATAGATCGCCCAAGTTGGGCAACCATACCATTTCGGGTGAGGAATTCTTTTTCTTCCCTGAT GGAAATATGATTGATCTTTCCCCACTGGATACTGACATTGACTCCTCGACTTTGCCTCGACTTTGTCCTGCGACG CGAAATCTCCTTCTGGACGAATCTGATGTTGATCTTGATCCATCAGACTCCGGGTTGATCCCTCGGGACCCTCGG AAACGTCTTTCCCCTCGCCATTCCCCCATGCCCTACGAAAGGGCCAAATCGAAAGTGTTATCCCTCTGGGATCAA CGTCTTAACGCAGTGACTGTTACAGCCCCTCCAATTGAGGATGGGGCCGGTCAAGTGGGTGGTAATGCTCCGGCT GTAAAAATGCCGGCTACGAAGGGAAAACTAGTTGAGAAGATGGATGTTGACAAAGCAGATGAGATTTCTCTCAGC GATGAAGATGGAGAATTTGAATATGAGTATGATGTGGAATGCGAACCGGATAGCTTTGCGCAAGTCCCTCGCTTC TCTCCCATATCTCAGATTAACTCATGGATTCTACAGGGCAGTATTGTCTCCAGAGACAAAGGCTTGGTTGAACCA GCCTATCTCCGAGAAAGATCGGGCCGCTCTTTGTGGCTTCAATTAGGATCGTCGAGTACTGCTACACCTGTATTA TATAATATGATCGCAAATGAGACTACTTCTTTATCCTCTTTGCTTGATCGAATGAATCCAATATGTGAAGTTCTC CATGCCTGTCATTCAAATTGTGAGGGTTGCAAAACCCGAAAGAATCTAGAAAAACATAGTTGGTTGCTCGATAGT GGTGCTTCATGCCACTTCACACCGAACCTTGAGGATTTTGCACATTTACAATGTGGAAACTTCGGTATCGTGCAT ACTGCAAATAAAGACTCTGTACTCAAAATCCAGGGACGCGGACATGTCTTAATCGAGCATACCGTAAAAGATATC TCCACGGGAAAAGAATTTAAATCAGTATCAAAGATCTGGCCCGTGTTCTATGTCAACGGCATGAATCATAGACTT CTTTCAACTGCTCAGTTGTTGAAGTCTGGACTTAAACTAGAGTCTACAAAAGATGGATCTGTATTCAAAAACGAA GCAGGTCAAGCGATTCTTAGTGCCCGTCCGGAAGGTCTTTTTGGCGGCATGCACATTGTTGAGTGTACCTTCTTA AAACACTCCAAAACAGAACCATACTTGCTTAACGCAAGCGGAATACTCCAGCTCCCTGACTACACCATTTGGCAT TGTAGATTAGGTCATCCTTCTGATAATGTGTTGAAGAAATTCTTCGAGGAAACCCTAGGAGTACCGAAGATTAAT ATTCCACAACAGAAACCGGTTTGTGATGGTTGTGTTCGTGGCAAACTTACGCAACAATCATTTCCACAATCGGAA AAATGTGCTACTTCAGTACTCGAACTGGTCCACTTGGATCTATTCGAACTCCCTGTCCCCTCTTATCACAAATAC AAATGGGTGATGACTTTGCTTGACGACTATTCCGGTCTCGCTCAGATTGTCATGATAACCAAGAAAAGTGATGCC GCGTTACAGTTGATTAATATCCTAAAACAGTTGGCTACTCAATCTGATCAAAAGATCAAAAGATTGCGTACAGAT CAAGGAGGAGAGTATGTCAATGATACACTCTCGACATACCTGAAGTCACAAGGCATTGTGCATGAACTCTCACAT CAGGAAAAGGTAAAGTGA
Gene	>AgabiH97|076160 ATGCTCAGTCAAGCGGCCGCTCAAACGGATGCTAGAGCTCTTTGGAATTGGTTGGAAGGCCAATATGGCCAAAAA GGACCAACGTTCGCCTATGAACGTTTTATTACAGCTCAAAATTTCAAGATAAATGACTCCGCCGATCCATCATCT GCGATTGCAGATCTCTACGCATTATTTGCCGCTGTCGAAAGCACTGGTGCGTTGATACATGAGTCGATCCGCACT ATGATGCTCCTCAACGCTCTCCCCAACTGGTTCGAGCATGTTGCTGCAAACATTCTTGCTGAGAAAAGGTCGGTT GCCGATCTTAAATGGGAGGAAACTTGTGCCCGCATTATTGCTGTGTGGCGCAACCCCCATACAGTTGCCAATGCT GCGTGCTTCCGCCAGCAGAACCAGCCTAAACCCAGATGGGACAATAAAAAGCCCAATCAAGGGCAAGGCAAGTCC CAAGGCTCTGGTTCCGGTTCTGGCTCCGGCCAGAACCAAAACAAGCAACAACAACCTCAGCAGAAGAAGGAAGGT GAAGAGCAGAGTAACGACAAAAAGAAGAAGAGAACCCGCTCCCGTAAAAAGAAGCAGGGTAACGAGGCTTCTACC ACCTCTATCGAAGAAGTCAAGGATACGACTCCTGACTACTCCGCTTCTTCTGCCATTGCTTCAATGGCGCAGCTC GCATCCACCTCTACATGCACAAAAGTCAATGAGATGAAGAGCAGGTTCGTCCCGCTTCCATCTAGATCAGATCCT AATCTAACAAGGAATAGATCGCCCAAGTTGGGCAACCATACCATTTCGGGTGAGGAATTCTTTTTCTTCCCTGAT GGAAATATGATTGATCTTTCCCCACTGGATACTGACATTGACTCCTCGACTTTGCCTCGACTTTGTCCTGCGACG CGAAATCTCCTTCTGGACGAATCTGATGTTGATCTTGATCCATCAGACTCCGGGTTGATCCCTCGGGACCCTCGG AAACGTCTTTCCCCTCGCCATTCCCCCATGCCCTACGAAAGGGCCAAATCGAAAGTGTTATCCCTCTGGGATCAA CGTCTTAACGCAGTGACTGTTACAGCCCCTCCAATTGAGGATGGGGCCGGTCAAGTGGGTGGTAATGCTCCGGCT GTAAAAATGCCGGCTACGAAGGGAAAACTAGTTGAGAAGATGGATGTTGACAAAGCAGATGAGATTTCTCTCAGC GATGAAGATGGAGAATTTGAATATGAGTATGATGTGGAATGCGAACCGGATAGCTTTGCGCAAGTCCCTCGCTTC TCTCCCATATCTCAGATTAACTCATGGATTCTACAGGGCAGTATTGTCTCCAGAGACAAAGGCTTGGTTGAACCA GCCTATCTCCGAGAAAGATCGGGCCGCTCTTTGTGGCTTCAATTAGGATCGTCGAGTACTGCTACACCTGTATTA TATAATATGATCGCAAATGAGACTACTTCTTTATCCTCTTTGCTTGATCGAATGAATCCAATATGTGAAGTTCTC CATGCCTGTCATTCAAATTGTGAGGGTTGCAAAACCCGAAAGAATCTAGAAAAACATAGTTGGTTGCTCGATAGT GGTGCTTCATGCCACTTCACACCGAACCTTGAGGATTTTGCACATTTACAATGTGGAAACTTCGGTATCGTGCAT ACTGCAAATAAAGACTCTGTACTCAAAATCCAGGGACGCGGACATGTCTTAATCGAGCATACCGTAAAAGATATC TCCACGGGAAAAGAATTTAAATCAGTATCAAAGATCTGGCCCGTGTTCTATGTCAACGGCATGAATCATAGACTT CTTTCAACTGCTCAGTTGTTGAAGTCTGGACTTAAACTAGAGTCTACAAAAGATGGATCTGTATTCAAAAACGAA GCAGGTCAAGCGATTCTTAGTGCCCGTCCGGAAGGTCTTTTTGGCGGCATGCACATTGTTGAGTGTACCTTCTTA AAACACTCCAAAACAGAACCATACTTGCTTAACGCAAGCGGAATACTCCAGCTCCCTGACTACACCATTTGGCAT TGTAGATTAGGTCATCCTTCTGATAATGTGTTGAAGAAATTCTTCGAGGAAACCCTAGGAGTACCGAAGATTAAT ATTCCACAACAGAAACCGGTTTGTGATGGTTGTGTTCGTGGCAAACTTACGCAACAATCATTTCCACAATCGGAA AAATGTGCTACTTCAGTACTCGAACTGGTCCACTTGGATCTATTCGAACTCCCTGTCCCCTCTTATCACAAATAC AAATGGGTGATGACTTTGCTTGACGACTATTCCGGTCTCGCTCAGATTGTCATGATAACCAAGAAAAGTGATGCC GCGTTACAGTTGATTAATATCCTAAAACAGTTGGCTACTCAATCTGATCAAAAGATCAAAAGATTGCGTACAGAT CAAGGAGGAGAGTATGTCAATGATACACTCTCGACATACCTGAAGTCACAAGGCATTGTGCATGAACTCTCACAT CAGGAAAAGGTAAAGTGA