© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|075150 |
| Gene name | |
| Location | scaffold_4:2301640..2302985 |
| Strand | + |
| Gene length (bp) | 1345 |
| Transcript length (bp) | 936 |
| Coding sequence length (bp) | 936 |
| Protein length (aa) | 312 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05365 | UCR_UQCRX_QCR9 | Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like | 5.2E-26 | 6 | 57 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.0E-11 | 79 | 148 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6CJX2|QCR9_KLULA | Cytochrome b-c1 complex subunit 9 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=QCR9 PE=3 SV=3 | 1 | 54 | 3.0E-17 |
| sp|P22289|QCR9_YEAST | Cytochrome b-c1 complex subunit 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QCR9 PE=1 SV=2 | 1 | 56 | 3.0E-15 |
| sp|O74433|QCR9_SCHPO | Cytochrome b-c1 complex subunit 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qcr9 PE=3 SV=2 | 4 | 61 | 2.0E-10 |
| sp|P00130|QCR9_BOVIN | Cytochrome b-c1 complex subunit 9 OS=Bos taurus GN=UQCR10 PE=1 SV=3 | 2 | 57 | 3.0E-10 |
| sp|Q8R1I1|QCR9_MOUSE | Cytochrome b-c1 complex subunit 9 OS=Mus musculus GN=Uqcr10 PE=1 SV=1 | 2 | 57 | 6.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6CJX2|QCR9_KLULA | Cytochrome b-c1 complex subunit 9 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=QCR9 PE=3 SV=3 | 1 | 54 | 3.0E-17 |
| sp|P22289|QCR9_YEAST | Cytochrome b-c1 complex subunit 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QCR9 PE=1 SV=2 | 1 | 56 | 3.0E-15 |
| sp|O74433|QCR9_SCHPO | Cytochrome b-c1 complex subunit 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qcr9 PE=3 SV=2 | 4 | 61 | 2.0E-10 |
| sp|P00130|QCR9_BOVIN | Cytochrome b-c1 complex subunit 9 OS=Bos taurus GN=UQCR10 PE=1 SV=3 | 2 | 57 | 3.0E-10 |
| sp|Q8R1I1|QCR9_MOUSE | Cytochrome b-c1 complex subunit 9 OS=Mus musculus GN=Uqcr10 PE=1 SV=1 | 2 | 57 | 6.0E-10 |
| sp|Q9UDW1|QCR9_HUMAN | Cytochrome b-c1 complex subunit 9 OS=Homo sapiens GN=UQCR10 PE=1 SV=3 | 2 | 57 | 1.0E-09 |
| sp|Q6PG31|RNPS1_DANRE | RNA-binding protein with serine-rich domain 1 OS=Danio rerio GN=rnps1 PE=2 SV=1 | 83 | 148 | 4.0E-09 |
| sp|Q1MTR2|RNPS1_SCHPO | RNA-binding protein with serine-rich domain 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13G1.14c PE=3 SV=2 | 77 | 159 | 5.0E-09 |
| sp|Q9XY35|QCR9_DROME | Cytochrome b-c1 complex subunit 9 OS=Drosophila melanogaster GN=ox PE=3 SV=1 | 7 | 57 | 1.0E-08 |
| sp|Q6AYK1|RNPS1_RAT | RNA-binding protein with serine-rich domain 1 OS=Rattus norvegicus GN=Rnps1 PE=2 SV=1 | 79 | 148 | 2.0E-08 |
| sp|Q5NVM8|RNPS1_PONAB | RNA-binding protein with serine-rich domain 1 OS=Pongo abelii GN=RNPS1 PE=2 SV=1 | 79 | 148 | 3.0E-08 |
| sp|Q99M28|RNPS1_MOUSE | RNA-binding protein with serine-rich domain 1 OS=Mus musculus GN=Rnps1 PE=2 SV=1 | 79 | 148 | 3.0E-08 |
| sp|Q4R5N1|RNPS1_MACFA | RNA-binding protein with serine-rich domain 1 OS=Macaca fascicularis GN=RNPS1 PE=2 SV=1 | 79 | 148 | 3.0E-08 |
| sp|Q15287|RNPS1_HUMAN | RNA-binding protein with serine-rich domain 1 OS=Homo sapiens GN=RNPS1 PE=1 SV=1 | 79 | 148 | 3.0E-08 |
| sp|A6QR16|RNPS1_BOVIN | RNA-binding protein with serine-rich domain 1 OS=Bos taurus GN=RNPS1 PE=2 SV=1 | 79 | 148 | 3.0E-08 |
| sp|Q5XG24|RNP1A_XENLA | RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis GN=rnps1-a PE=2 SV=1 | 79 | 148 | 8.0E-08 |
| sp|Q3KPW1|RNP1B_XENLA | RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis GN=rnps1-b PE=2 SV=1 | 79 | 162 | 9.0E-08 |
| sp|Q28E41|RNPS1_XENTR | RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis GN=rnps1 PE=2 SV=1 | 79 | 148 | 2.0E-07 |
| sp|Q44554|RBPB_NOSS1 | Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpB PE=3 SV=3 | 79 | 150 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0005750 | mitochondrial respiratory chain complex III | Yes |
| GO:0006091 | generation of precursor metabolites and energy | No |
| GO:0098796 | membrane protein complex | No |
| GO:0008150 | biological_process | No |
| GO:0045275 | respiratory chain complex III | No |
| GO:0009060 | aerobic respiration | No |
| GO:0098803 | respiratory chain complex | No |
| GO:0022900 | electron transport chain | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0005575 | cellular_component | No |
| GO:0005488 | binding | No |
| GO:0019646 | aerobic electron transport chain | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1902495 | transmembrane transporter complex | No |
| GO:0008152 | metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0022904 | respiratory electron transport chain | No |
| GO:0003674 | molecular_function | No |
| GO:1990351 | transporter complex | No |
| GO:0045333 | cellular respiration | No |
| GO:0032991 | protein-containing complex | No |
| GO:0070069 | cytochrome complex | No |
| GO:0009987 | cellular process | No |
| GO:0015980 | energy derivation by oxidation of organic compounds | No |
| GO:1990204 | oxidoreductase complex | No |
| GO:0044237 | cellular metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | 0.1951 | 0.5463 | 0.0421 | 0.0406 | 0.456 | 0.0777 | 0.2197 | 0.0462 | 0.0164 | 0.0154 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 17 | 39 | 22 |
| Orthofinder run ID | 1 |
| Orthogroup | 951 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|075150 MSLATGLYNSFFRRNSVFVGSVFAGAFFFGVGFDMGVTSFWERWNKGKLWKDMRHKYVEDDAYRCNMEVESANAD AKVVVITNLTRNVVEGHLQAVFAFYGDIVKIDLPVFGKSGQNRGKAALEYADAASAHRAFEHMDGGQLDGAVLKL ELSDLPVRTRARTRSPPPHRSRRGGPPPDAEKNHHSVVDVAVGAEEVLLHHPHAIGIEAIGGPVHHFLVDLAISL AEDPQVILAEDTVVLIVITVEVVVVLHVEEDLFVADLCLVPTLHVQGLLQILGLVLQGADPQVTQFAPVVQGLGL SPVLGLHSRAR* |
| Coding | >AgabiH97|075150 ATGAGTCTCGCCACCGGTCTCTACAACTCGTTTTTCAGGCGTAACAGCGTCTTTGTTGGCTCCGTCTTTGCGGGT GCCTTTTTCTTCGGTGTCGGCTTTGATATGGGCGTGACTTCCTTCTGGGAGCGGTGGAACAAGGGCAAACTATGG AAAGATATGCGCCATAAATATGTAGAGGATGATGCGTACCGTTGCAACATGGAGGTCGAGTCGGCCAACGCAGAC GCAAAGGTCGTCGTCATCACAAATCTCACCAGAAACGTCGTCGAAGGCCATCTCCAGGCCGTCTTTGCTTTTTAC GGCGACATCGTCAAAATCGACCTCCCCGTCTTTGGAAAATCCGGTCAGAACAGAGGCAAGGCCGCTCTTGAGTAT GCAGACGCCGCGTCGGCTCATCGCGCTTTCGAACACATGGACGGTGGCCAACTCGACGGCGCCGTCCTAAAACTC GAACTTTCAGACCTCCCCGTTCGCACTCGCGCTCGCACTCGTTCTCCACCACCTCATCGCTCTCGTCGCGGCGGT CCACCACCAGACGCGGAGAAAAACCATCATTCCGTGGTGGACGTGGCGGTTGGGGCAGAAGAGGTCCTCCTCCAC CACCCCCACGCAATAGGGATAGAGGCTATCGGAGGTCCCGTTCACCACTTCCTCGTCGACCTGGCTATCTCCCTC GCCGAAGATCCCCAAGTTATACTCGCGGAGGATACGGTGGTCCTGATCGTGATTACGGTAGAAGTCGTGGTGGTG CTGCACGTAGAGGAAGACCTATTCGTGGCAGACCTCTGTCTCGTTCCTACTCTCCACGTTCAAGGTCTCCTTCAA ATTCTAGGTCTCGTTCTCCAAGGAGCAGATCCGCAAGTTACTCAGTTCGCTCCAGTCGTTCAAGGACTAGGTCTA TCACCCGTTCTAGGACTCCACTCTCGCGCTCGCTGA |
| Transcript | >AgabiH97|075150 ATGAGTCTCGCCACCGGTCTCTACAACTCGTTTTTCAGGCGTAACAGCGTCTTTGTTGGCTCCGTCTTTGCGGGT GCCTTTTTCTTCGGTGTCGGCTTTGATATGGGCGTGACTTCCTTCTGGGAGCGGTGGAACAAGGGCAAACTATGG AAAGATATGCGCCATAAATATGTAGAGGATGATGCGTACCGTTGCAACATGGAGGTCGAGTCGGCCAACGCAGAC GCAAAGGTCGTCGTCATCACAAATCTCACCAGAAACGTCGTCGAAGGCCATCTCCAGGCCGTCTTTGCTTTTTAC GGCGACATCGTCAAAATCGACCTCCCCGTCTTTGGAAAATCCGGTCAGAACAGAGGCAAGGCCGCTCTTGAGTAT GCAGACGCCGCGTCGGCTCATCGCGCTTTCGAACACATGGACGGTGGCCAACTCGACGGCGCCGTCCTAAAACTC GAACTTTCAGACCTCCCCGTTCGCACTCGCGCTCGCACTCGTTCTCCACCACCTCATCGCTCTCGTCGCGGCGGT CCACCACCAGACGCGGAGAAAAACCATCATTCCGTGGTGGACGTGGCGGTTGGGGCAGAAGAGGTCCTCCTCCAC CACCCCCACGCAATAGGGATAGAGGCTATCGGAGGTCCCGTTCACCACTTCCTCGTCGACCTGGCTATCTCCCTC GCCGAAGATCCCCAAGTTATACTCGCGGAGGATACGGTGGTCCTGATCGTGATTACGGTAGAAGTCGTGGTGGTG CTGCACGTAGAGGAAGACCTATTCGTGGCAGACCTCTGTCTCGTTCCTACTCTCCACGTTCAAGGTCTCCTTCAA ATTCTAGGTCTCGTTCTCCAAGGAGCAGATCCGCAAGTTACTCAGTTCGCTCCAGTCGTTCAAGGACTAGGTCTA TCACCCGTTCTAGGACTCCACTCTCGCGCTCGCTGA |
| Gene | >AgabiH97|075150 ATGAGTGTAAGTCGTCCTCCTCGCAGCCCAATATCGCTTGCTCACCCTGCTTTCAGCTCGCCACCGGTCTCTACA ACTCGTTTTTCAGGCGTAACAGTGCGCTTTATCCCCCGCCTCTGCCCGCAGCTGCTCACACCCCATAGGCGTCTT TGTTGGCTCCGTCTTTGCGGGTGCCTTTTTCTTCGGTGTCGGCTTTGATATGGGCGTGACTTCCTTCTGGGAGCG GTGGAACAAGGGCGTACGTCCCCTTTCTCTTCAGCAATTTCCTTTTTCACATTTCTGGCTGTAGAAACTATGGAA AGATATGCGCCATAAATATGTAGAGGATGATGCGTAGTTAGTTAAACCTATAGAGATATGTGTGACGTGTGTGAC ATCCAGCCCTTGAGCCGTTGCAACATGGAGGTCGAGTCGGCCAACGCAGACGCAAAGGTCGTCGTCATCACAAAT CTCACCAGAAACGTCGTCGAAGGCCATCTCCAGGCCGTCTTTGCTTTTTACGGCGACATCGTCAAAATCGACCTC CCCGTCTTTGGAAAATGTGCGTTTCTCTTTCTTTCTCTCTCTCTCCCCGCTCCTCAACGACGCGCAGCCGGTCAG AACAGAGGCAAGGCCGCTCTTGAGTATGCAGACGCCGCGTCGGCTCATCGCGCTTTCGAACACATGGACGGTGGC CAACTCGACGGCGCCGTCCTAAAACTCGAACTTTCAGACCTCCCCGTTCGCACTCGCGCTCGCACTCGTTCTCCA CCACCTCATCGCTCTCGTCGCGGCGGTCCACCACCAGGTTCGCGTTATCGCAACGGTCGAGGCCCGCGTTCTCCC TCCTTCTCACGTTCACGCTCTCCTTACTCCCGTTCCCTGTCACCTCGTTCAAGGAGCCCAAGGTCACCTAGGTCC TTGTCAAGATCCAGAACTCGTTCACCATCACCTTATTCCCGTAGACGCGGAGAAAAACCATCATTCCGTGGTGGA CGTGGCGGTTGGGGCAGAAGAGGTCCTCCTCCACCACCCCCACGCAATAGGGATAGAGGCTATCGGAGGTCCCGT TCACCACTTCCTCGTCGACCTGGCTATCTCCCTCGCCGAAGATCCCCAAGTTATACTCGCGGAGGATACGGTGGT CCTGATCGTGATTACGGTAGAAGTCGTGGTGGTGCTGCACGTAGAGGAAGACCTATTCGTGGCAGACCTCTGTCT CGTTCCTACTCTCCACGTTCAAGGTCTCCTTCAAATTCTAGGTCTCGTTCTCCAAGGAGCAGATCCGCAAGTTAC TCAGTTCGCTCCAGTCGTTCAAGGACTAGGTCTATCACCCGTTCTAGGACTCCACTCTCGCGCTCGCTGA |