© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|073970 |
| Gene name | |
| Location | scaffold_4:2043360..2044302 |
| Strand | + |
| Gene length (bp) | 942 |
| Transcript length (bp) | 711 |
| Coding sequence length (bp) | 711 |
| Protein length (aa) | 237 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05008 | V-SNARE | Vesicle transport v-SNARE protein N-terminus | 4.4E-19 | 16 | 93 |
| PF12352 | V-SNARE_C | Snare region anchored in the vesicle membrane C-terminus | 1.7E-14 | 149 | 208 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P78768|VTI1_SCHPO | Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 | 9 | 215 | 8.0E-31 |
| sp|Q9LVP9|VTI13_ARATH | Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1 | 9 | 235 | 5.0E-23 |
| sp|Q9SEL5|VTI12_ARATH | Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3 | 8 | 235 | 7.0E-23 |
| sp|Q04338|VTI1_YEAST | t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3 | 6 | 216 | 1.0E-21 |
| sp|O89116|VTI1A_MOUSE | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1 | 9 | 233 | 2.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P78768|VTI1_SCHPO | Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 | 9 | 215 | 8.0E-31 |
| sp|Q9LVP9|VTI13_ARATH | Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1 | 9 | 235 | 5.0E-23 |
| sp|Q9SEL5|VTI12_ARATH | Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3 | 8 | 235 | 7.0E-23 |
| sp|Q04338|VTI1_YEAST | t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3 | 6 | 216 | 1.0E-21 |
| sp|O89116|VTI1A_MOUSE | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1 | 9 | 233 | 2.0E-19 |
| sp|Q96AJ9|VTI1A_HUMAN | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2 | 9 | 228 | 2.0E-18 |
| sp|Q9JI51|VTI1A_RAT | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1 | 6 | 231 | 3.0E-18 |
| sp|Q54CK6|VTI1A_DICDI | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1 | 8 | 208 | 2.0E-15 |
| sp|Q9SEL6|VTI11_ARATH | Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2 | 8 | 212 | 3.0E-13 |
| sp|P58200|VTI1B_RAT | Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2 | 9 | 234 | 5.0E-12 |
| sp|O88384|VTI1B_MOUSE | Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1 | 9 | 234 | 8.0E-12 |
| sp|Q2KIU0|VTI1B_BOVIN | Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1 | 10 | 230 | 3.0E-10 |
| sp|Q9UEU0|VTI1B_HUMAN | Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3 | 4 | 208 | 4.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006886 | intracellular protein transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0015031 | protein transport | No |
| GO:0051179 | localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0008150 | biological_process | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0051641 | cellular localization | No |
| GO:0006810 | transport | No |
| GO:0008104 | protein localization | No |
| GO:0071702 | organic substance transport | No |
| GO:0033036 | macromolecule localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0009987 | cellular process | No |
| GO:0051649 | establishment of localization in cell | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 213 | 231 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 103.28 | 60.17 | 146.39 |
| Initials | Initials knots | 81.54 | 46.93 | 116.15 |
| Pileal_Stipeal_center | Stage I stipe center | 84.56 | 49.04 | 120.09 |
| Pileal_Stipeal_shell | Stage I stipe shell | 80.03 | 45.98 | 114.08 |
| DIF_stipe_center | Stage II stipe center | 105.14 | 61.38 | 148.91 |
| DIF_stipe_shell | Stage II stipe shell | 96.50 | 56.36 | 136.64 |
| DIF_stipe_skin | Stage II stipe skin | 91.04 | 52.90 | 129.19 |
| DIF_cap_skin | Stage II cap skin | 110.20 | 65.08 | 155.32 |
| DIF_cap_tissue | Stage II cap tissue | 104.29 | 61.08 | 147.50 |
| DIF_gill_tissue | Stage II gill tissue | 101.62 | 59.29 | 143.96 |
| YFB_stipe_center | Young fruiting body stipe center | 121.96 | 71.94 | 171.98 |
| YFB_stipe_shell | Young fruiting body stipe shell | 107.50 | 63.44 | 151.57 |
| YFB_stipe_skin | Young fruiting body stipe skin | 99.40 | 58.02 | 140.78 |
| YFB_cap_skin | Young fruiting body cap skin | 99.53 | 58.38 | 140.68 |
| YFB_cap_tissue | Young fruiting body cap tissue | 116.25 | 68.91 | 163.59 |
| YFB_gill_tissue | Young fruiting body gill tissue | 82.09 | 47.17 | 117.00 |
| YFB_veil | Young fruiting body veil | 82.69 | 47.96 | 117.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.978040 | no |
| Casing | YFB_stipe_center | 0.688260 | no |
| Casing | YFB_stipe_shell | 0.940862 | no |
| Casing | YFB_stipe_skin | 0.945120 | no |
| Casing | YFB_cap_skin | 0.948117 | no |
| Casing | YFB_cap_tissue | 0.796795 | no |
| Casing | YFB_gill_tissue | 0.545643 | no |
| Casing | YFB_veil | 0.548603 | no |
| Casing | Initials | 0.528460 | no |
| Casing | Pileal_Stipeal_center | 0.602498 | no |
| Casing | Pileal_Stipeal_shell | 0.484796 | no |
| Casing | DIF_stipe_center | 0.975305 | no |
| Casing | DIF_stipe_shell | 0.895686 | no |
| Casing | DIF_stipe_skin | 0.778735 | no |
| Casing | DIF_cap_skin | 0.898507 | no |
| Casing | DIF_cap_tissue | 0.985455 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.651057 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.913069 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.968631 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.970544 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.761644 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.588747 | no |
| DIF_gill_tissue | YFB_veil | 0.591156 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.773385 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.588700 | no |
| YFB_stipe_center | YFB_cap_skin | 0.589671 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.929632 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.197823 | no |
| YFB_stipe_center | YFB_veil | 0.183562 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.876270 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.878385 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.875284 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.444576 | no |
| YFB_stipe_shell | YFB_veil | 0.445290 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.997593 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.709760 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.635522 | no |
| YFB_stipe_skin | YFB_veil | 0.640353 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.712265 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.633980 | no |
| YFB_cap_skin | YFB_veil | 0.638874 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.280851 | no |
| YFB_cap_tissue | YFB_veil | 0.273845 | no |
| YFB_gill_tissue | YFB_veil | 0.988583 | no |
| Initials | DIF_gill_tissue | 0.565926 | no |
| Initials | YFB_stipe_center | 0.183815 | no |
| Initials | YFB_stipe_shell | 0.417769 | no |
| Initials | YFB_stipe_skin | 0.621727 | no |
| Initials | YFB_cap_skin | 0.616341 | no |
| Initials | YFB_cap_tissue | 0.263398 | no |
| Initials | YFB_gill_tissue | 0.990107 | no |
| Initials | YFB_veil | 0.980063 | no |
| Initials | Pileal_Stipeal_center | 0.948865 | no |
| Initials | Pileal_Stipeal_shell | 0.973729 | no |
| Initials | DIF_stipe_center | 0.481158 | no |
| Initials | DIF_stipe_shell | 0.687740 | no |
| Initials | DIF_stipe_skin | 0.814489 | no |
| Initials | DIF_cap_skin | 0.365721 | no |
| Initials | DIF_cap_tissue | 0.501599 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.651486 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.231221 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.500293 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.699493 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.695213 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.322615 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.957727 | no |
| Pileal_Stipeal_center | YFB_veil | 0.967830 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.921455 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.565694 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.764138 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.882669 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.437303 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.583742 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.521681 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.156648 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.379989 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.576268 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.570295 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.232204 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.965348 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.954936 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.437516 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.639158 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.776020 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.330998 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.459539 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.953015 | no |
| DIF_stipe_center | YFB_stipe_center | 0.729192 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.967818 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.917463 | no |
| DIF_stipe_center | YFB_cap_skin | 0.919545 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.833278 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.504798 | no |
| DIF_stipe_center | YFB_veil | 0.506456 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.863718 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.738103 | no |
| DIF_stipe_center | DIF_cap_skin | 0.929789 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.986745 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.925104 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.522533 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.814221 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.958334 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.956908 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.635435 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.701229 | no |
| DIF_stipe_shell | YFB_veil | 0.709724 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.909299 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.760012 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.876116 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.817971 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.382825 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.682032 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.860905 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.857317 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.490229 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.831450 | no |
| DIF_stipe_skin | YFB_veil | 0.844534 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.621727 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.757854 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.870965 | no |
| DIF_cap_skin | YFB_stipe_center | 0.826393 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.963064 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.825410 | no |
| DIF_cap_skin | YFB_cap_skin | 0.827829 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.918333 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.382526 | no |
| DIF_cap_skin | YFB_veil | 0.383535 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.914878 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.964542 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.713992 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.956528 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.931121 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.933960 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.817880 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.523438 | no |
| DIF_cap_tissue | YFB_veil | 0.525891 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|073970 MDTSPTALFESYEQDFLQFIEGIKDKLEGNGKNEIGEHRDATLRRVEMDLDEADEMVSQMEIEIQGIPQSLRTTY LSRLKSAKSSLSIYKKSLIDTRTSLARAELFSKSPNSSSSSPDNNGGNGYYNSDDPYSDRSRLLSGTNILEDGTK RLQESQRIALETEEQGAGILRDLRGQREQIENSRGTLWRADAAVDRASSKLKTMIRRMYQQRAVTYSIIAVLVLL VIIIVWEKLSG* |
| Coding | >AgabiH97|073970 ATGGACACCTCACCCACTGCCCTCTTCGAATCCTACGAACAAGACTTTCTCCAATTCATCGAAGGTATAAAAGAT AAACTCGAAGGAAACGGAAAGAATGAAATTGGCGAACATCGAGATGCCACTTTACGAAGAGTAGAAATGGATCTC GACGAAGCCGACGAAATGGTCTCTCAAATGGAAATCGAAATCCAAGGAATCCCTCAATCCCTCCGAACAACCTAC CTCTCCCGTCTCAAATCCGCCAAATCCTCTTTATCAATCTACAAAAAATCTTTAATCGACACTCGCACCTCTTTA GCCCGCGCAGAACTCTTTTCCAAATCCCCTAATTCTTCTTCTTCCTCCCCAGACAATAATGGCGGAAACGGGTAT TACAATTCTGACGACCCGTATTCTGATCGGTCGAGATTACTTTCTGGTACGAATATACTTGAAGATGGGACCAAA CGATTACAAGAGTCTCAACGAATTGCACTTGAGACTGAAGAGCAAGGTGCCGGTATCTTGAGAGATTTGAGAGGT CAAAGAGAACAAATTGAGAACTCCAGAGGGACGTTATGGAGAGCAGATGCAGCTGTTGACAGAGCATCAAGTAAA CTCAAGACGATGATTCGGAGGATGTATCAGCAGCGTGCGGTCACATACTCCATCATAGCTGTTCTCGTGCTCCTC GTCATCATCATCGTTTGGGAGAAACTCAGCGGATGA |
| Transcript | >AgabiH97|073970 ATGGACACCTCACCCACTGCCCTCTTCGAATCCTACGAACAAGACTTTCTCCAATTCATCGAAGGTATAAAAGAT AAACTCGAAGGAAACGGAAAGAATGAAATTGGCGAACATCGAGATGCCACTTTACGAAGAGTAGAAATGGATCTC GACGAAGCCGACGAAATGGTCTCTCAAATGGAAATCGAAATCCAAGGAATCCCTCAATCCCTCCGAACAACCTAC CTCTCCCGTCTCAAATCCGCCAAATCCTCTTTATCAATCTACAAAAAATCTTTAATCGACACTCGCACCTCTTTA GCCCGCGCAGAACTCTTTTCCAAATCCCCTAATTCTTCTTCTTCCTCCCCAGACAATAATGGCGGAAACGGGTAT TACAATTCTGACGACCCGTATTCTGATCGGTCGAGATTACTTTCTGGTACGAATATACTTGAAGATGGGACCAAA CGATTACAAGAGTCTCAACGAATTGCACTTGAGACTGAAGAGCAAGGTGCCGGTATCTTGAGAGATTTGAGAGGT CAAAGAGAACAAATTGAGAACTCCAGAGGGACGTTATGGAGAGCAGATGCAGCTGTTGACAGAGCATCAAGTAAA CTCAAGACGATGATTCGGAGGATGTATCAGCAGCGTGCGGTCACATACTCCATCATAGCTGTTCTCGTGCTCCTC GTCATCATCATCGTTTGGGAGAAACTCAGCGGATGA |
| Gene | >AgabiH97|073970 ATGGACACCTCACCCACTGCCCTCTTCGAATCCTACGAACAAGACTTTCTCCAATTCATCGAAGGTATAAAAGAT AAACTCGAAGGAAACGGAAAGAATGAAATTGGCGGTACGTTTAAAACCCATAACATTTAATTATTCAGCGCTTAT TTTTGTGTTGCATAGAACATCGAGATGCCACTTTACGAAGAGTAGAAATGGATCTCGACGAAGCCGACGAAATGG TTAGTAGCAAAACACCTTTCCACATTTCCAGTTAATCATTTTAACATATCCCTCAACAGGTCTCTCAAATGGAAA TCGAAATCCAAGGAATCCCTCAATCCCTCCGAACAACCTACCTCTCCCGTCTCAAATCCGCCAAATCCTCTTTAT CAATCTACAAAAAATCTTTAATCGACACTCGCACCTCTTTAGCCCGCGCAGAACTCTTTTCCAAATCCCCTAATT CTTCTTCTTCCTCCCCAGACAATAATGGCGGAAACGGGTATTACAATTCTGACGACCCGTATTCTGATCGGTCGA GATTACTTTCTGGTACGAATATACTTGAAGATGGGACCAAACGATTACAAGAGTCTCAACGAATTGCACTTGAGA CTGAAGAGCAAGGTGCCGGTATCTTGAGAGATTTGAGAGGTCAAAGAGAACAAATTGAGAACTCCAGAGGGACGG TAAGTCATTACTACACCCGCACGTAATTTCTATACTCATATCATTTCCAAAAAGTTATGGAGAGCAGATGCAGCT GTTGACAGAGCATCAAGTAAACTCAAGACGATGATTCGGAGGTCAGAACACAGCTCACTCCCTGCCCCATTATTT TGTTGTTGAAACATAACATCTCACAGGATGTATCAGCAGCGTGCGGTCACATACTCCATCATAGCTGTTCTCGTG CTCCTCGTCATCATCATCGTTTGGGAGAAACTCAGCGGATGA |