Protein ID | AgabiH97|073850 |
Gene name | |
Location | scaffold_4:2023683..2025577 |
Strand | - |
Gene length (bp) | 1894 |
Transcript length (bp) | 1209 |
Coding sequence length (bp) | 1209 |
Protein length (aa) | 403 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01053 | Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme | 1.6E-57 | 14 | 395 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P38716|YHR2_YEAST | Uncharacterized trans-sulfuration enzyme YHR112C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR112C PE=1 SV=1 | 14 | 399 | 7.0E-91 |
sp|O42851|YFHE_SCHPO | Uncharacterized trans-sulfuration enzyme C23A1.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.14c PE=2 SV=1 | 33 | 397 | 2.0E-75 |
sp|P31373|CYS3_YEAST | Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | 30 | 396 | 3.0E-39 |
sp|Q55DV9|CGL_DICDI | Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1 | 13 | 396 | 3.0E-38 |
sp|P9WGB7|METB_MYCTU | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metB PE=1 SV=1 | 68 | 394 | 5.0E-38 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P38716|YHR2_YEAST | Uncharacterized trans-sulfuration enzyme YHR112C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR112C PE=1 SV=1 | 14 | 399 | 7.0E-91 |
sp|O42851|YFHE_SCHPO | Uncharacterized trans-sulfuration enzyme C23A1.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.14c PE=2 SV=1 | 33 | 397 | 2.0E-75 |
sp|P31373|CYS3_YEAST | Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | 30 | 396 | 3.0E-39 |
sp|Q55DV9|CGL_DICDI | Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1 | 13 | 396 | 3.0E-38 |
sp|P9WGB7|METB_MYCTU | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metB PE=1 SV=1 | 68 | 394 | 5.0E-38 |
sp|P9WGB6|METB_MYCTO | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=metB PE=3 SV=1 | 68 | 394 | 5.0E-38 |
sp|P66876|METB_MYCBO | Cystathionine gamma-synthase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=metB PE=3 SV=1 | 68 | 394 | 5.0E-38 |
sp|P0C2T9|METC_LACLC | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1 | 63 | 396 | 2.0E-35 |
sp|P53780|METC_ARATH | Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1 | 150 | 395 | 5.0E-35 |
sp|A2RM21|METC_LACLM | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | 63 | 396 | 6.0E-35 |
sp|P0A4K2|METC_LACLA | Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | 63 | 396 | 6.0E-35 |
sp|O31632|METC_BACSU | Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1 | 150 | 400 | 2.0E-34 |
sp|P46807|METB_MYCLE | Cystathionine gamma-synthase OS=Mycobacterium leprae (strain TN) GN=metB PE=3 SV=1 | 68 | 395 | 2.0E-34 |
sp|P00935|METB_ECOLI | Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1 | 31 | 395 | 4.0E-34 |
sp|O31631|METI_BACSU | Cystathionine gamma-synthase/O-acetylhomoserine (thiol)-lyase OS=Bacillus subtilis (strain 168) GN=metI PE=1 SV=1 | 26 | 399 | 1.0E-33 |
sp|O05394|MCCB_BACSU | Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | 151 | 397 | 3.0E-33 |
sp|P56069|METB_HELPY | Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=1 SV=1 | 152 | 398 | 6.0E-32 |
sp|Q1M0P5|METB_HELPX | Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | 152 | 397 | 9.0E-32 |
sp|Q60HG7|CGL_MACFA | Cystathionine gamma-lyase OS=Macaca fascicularis GN=CTH PE=2 SV=1 | 32 | 395 | 4.0E-31 |
sp|Q9ZMW7|METB_HELPJ | Cystathionine gamma-synthase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=metB PE=3 SV=1 | 152 | 397 | 4.0E-30 |
sp|Q59829|CYSA_STRCO | Putative cystathionine gamma-lyase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=cysA PE=3 SV=2 | 150 | 399 | 7.0E-30 |
sp|Q83A83|METC_COXBU | Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1 | 68 | 394 | 2.0E-29 |
sp|P44502|METB_HAEIN | Cystathionine gamma-synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=metB PE=3 SV=1 | 152 | 397 | 8.0E-29 |
sp|P13254|MEGL_PSEPU | Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2 | 8 | 395 | 1.0E-28 |
sp|Q19QT7|CGL_PIG | Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1 | 29 | 395 | 1.0E-28 |
sp|P55217|CGS1_ARATH | Cystathionine gamma-synthase 1, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=1 SV=3 | 150 | 397 | 2.0E-27 |
sp|Q9C876|CGS2_ARATH | Probable cystathionine gamma-synthase 2 OS=Arabidopsis thaliana GN=CGS2 PE=3 SV=1 | 34 | 397 | 6.0E-27 |
sp|P55216|CGL2_CAEEL | Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=3 SV=1 | 33 | 395 | 1.0E-25 |
sp|O94350|CBL_SCHPO | Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4 | 149 | 396 | 6.0E-25 |
sp|Q1K8G0|CBL_NEUCR | Cystathionine beta-lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-2 PE=1 SV=1 | 68 | 400 | 7.0E-25 |
sp|P32929|CGL_HUMAN | Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3 | 32 | 395 | 2.0E-24 |
sp|P55218|METZ_PSEAE | O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=metZ PE=1 SV=1 | 66 | 397 | 5.0E-24 |
sp|P9WGB5|METZ_MYCTU | O-succinylhomoserine sulfhydrylase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metZ PE=1 SV=1 | 64 | 394 | 1.0E-23 |
sp|P9WGB4|METZ_MYCTO | O-succinylhomoserine sulfhydrylase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=metZ PE=3 SV=1 | 64 | 394 | 1.0E-23 |
sp|P24601|METB_HERAU | Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1 | 90 | 276 | 2.0E-23 |
sp|Q58DW2|CGL_BOVIN | Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1 | 32 | 379 | 1.0E-22 |
sp|Q52811|METC_RHIL3 | Putative cystathionine beta-lyase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=metC PE=3 SV=2 | 150 | 394 | 1.0E-22 |
sp|P18757|CGL_RAT | Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2 | 32 | 395 | 2.0E-22 |
sp|Q8VCN5|CGL_MOUSE | Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1 | 32 | 395 | 7.0E-22 |
sp|P53101|STR3_YEAST | Cystathionine beta-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR3 PE=1 SV=1 | 35 | 394 | 5.0E-19 |
sp|Q07703|METC_BORAV | Cystathionine beta-lyase OS=Bordetella avium GN=metC PE=1 SV=3 | 68 | 396 | 2.0E-17 |
sp|P44527|METC_HAEIN | Cystathionine beta-lyase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=metC PE=3 SV=1 | 150 | 398 | 1.0E-16 |
sp|P06721|METC_ECOLI | Cystathionine beta-lyase MetC OS=Escherichia coli (strain K12) GN=metC PE=1 SV=1 | 150 | 397 | 3.0E-16 |
sp|P18949|METC_SALTY | Cystathionine beta-lyase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=metC PE=3 SV=2 | 150 | 397 | 7.0E-16 |
sp|P43623|METC_YEAST | Putative cystathionine beta-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC7 PE=1 SV=1 | 140 | 276 | 4.0E-14 |
sp|Q9SGU9|MGL_ARATH | Methionine gamma-lyase OS=Arabidopsis thaliana GN=MGL PE=1 SV=1 | 31 | 379 | 6.0E-13 |
sp|O13326|CYSD_SCHPO | O-acetylhomoserine (thiol)-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC428.11 PE=2 SV=1 | 66 | 395 | 3.0E-10 |
sp|P06106|MET17_YEAST | Protein MET17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MET17 PE=1 SV=3 | 76 | 397 | 5.0E-08 |
sp|Q92441|MET17_KLULA | Protein MET17 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MET17 PE=3 SV=3 | 66 | 394 | 1.0E-07 |
sp|P50125|CYSD_EMENI | O-acetylhomoserine (thiol)-lyase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cysD PE=2 SV=2 | 66 | 394 | 2.0E-07 |
GO Term | Description | Terminal node |
---|---|---|
GO:0030170 | pyridoxal phosphate binding | Yes |
GO:0019346 | transsulfuration | Yes |
GO:0044281 | small molecule metabolic process | No |
GO:0019842 | vitamin binding | No |
GO:0036094 | small molecule binding | No |
GO:1901605 | alpha-amino acid metabolic process | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0006790 | sulfur compound metabolic process | No |
GO:0005488 | binding | No |
GO:0070279 | vitamin B6 binding | No |
GO:0043167 | ion binding | No |
GO:0006520 | cellular amino acid metabolic process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0008150 | biological_process | No |
GO:0043168 | anion binding | No |
GO:0009069 | serine family amino acid metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0009092 | homoserine metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0000096 | sulfur amino acid metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0043436 | oxoacid metabolic process | No |
GO:0050667 | homocysteine metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0019752 | carboxylic acid metabolic process | No |
GO:0006082 | organic acid metabolic process | No |
GO:0006534 | cysteine metabolic process | No |
GO:0009987 | cellular process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 20 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 33.23 | 17.47 | 48.99 |
Initials | Initials knots | 32.80 | 18.54 | 47.07 |
Pileal_Stipeal_center | Stage I stipe center | 2.30 | 0.84 | 3.77 |
Pileal_Stipeal_shell | Stage I stipe shell | 1.83 | 0.63 | 3.04 |
DIF_stipe_center | Stage II stipe center | 4.20 | 1.78 | 6.62 |
DIF_stipe_shell | Stage II stipe shell | 2.45 | 0.88 | 4.03 |
DIF_stipe_skin | Stage II stipe skin | 2.98 | 1.15 | 4.81 |
DIF_cap_skin | Stage II cap skin | 0.84 | 0.18 | 1.49 |
DIF_cap_tissue | Stage II cap tissue | 1.50 | 0.47 | 2.53 |
DIF_gill_tissue | Stage II gill tissue | 1.68 | 0.54 | 2.82 |
YFB_stipe_center | Young fruiting body stipe center | 9.02 | 4.31 | 13.72 |
YFB_stipe_shell | Young fruiting body stipe shell | 5.13 | 2.24 | 8.03 |
YFB_stipe_skin | Young fruiting body stipe skin | 2.33 | 0.82 | 3.83 |
YFB_cap_skin | Young fruiting body cap skin | 1.17 | 0.30 | 2.03 |
YFB_cap_tissue | Young fruiting body cap tissue | 0.78 | 0.14 | 1.42 |
YFB_gill_tissue | Young fruiting body gill tissue | 1.18 | 0.31 | 2.05 |
YFB_veil | Young fruiting body veil | 0.95 | 0.24 | 1.67 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.000613 | yes |
Casing | YFB_stipe_center | 0.000613 | yes |
Casing | YFB_stipe_shell | 0.000613 | yes |
Casing | YFB_stipe_skin | 0.000613 | yes |
Casing | YFB_cap_skin | 0.000613 | yes |
Casing | YFB_cap_tissue | 0.000613 | yes |
Casing | YFB_gill_tissue | 0.000613 | yes |
Casing | YFB_veil | 0.000613 | yes |
Casing | Initials | 0.982846 | no |
Casing | Pileal_Stipeal_center | 0.000613 | yes |
Casing | Pileal_Stipeal_shell | 0.000613 | yes |
Casing | DIF_stipe_center | 0.000613 | yes |
Casing | DIF_stipe_shell | 0.000613 | yes |
Casing | DIF_stipe_skin | 0.000613 | yes |
Casing | DIF_cap_skin | 0.000613 | yes |
Casing | DIF_cap_tissue | 0.000613 | yes |
DIF_gill_tissue | YFB_stipe_center | 0.000613 | yes |
DIF_gill_tissue | YFB_stipe_shell | 0.004160 | yes |
DIF_gill_tissue | YFB_stipe_skin | 0.592871 | no |
DIF_gill_tissue | YFB_cap_skin | 0.584174 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.167110 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.603793 | no |
DIF_gill_tissue | YFB_veil | 0.323611 | no |
YFB_stipe_center | YFB_stipe_shell | 0.147674 | no |
YFB_stipe_center | YFB_stipe_skin | 0.000613 | yes |
YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_center | YFB_cap_tissue | 0.000613 | yes |
YFB_stipe_center | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_center | YFB_veil | 0.000613 | yes |
YFB_stipe_shell | YFB_stipe_skin | 0.051115 | no |
YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_shell | YFB_cap_tissue | 0.000613 | yes |
YFB_stipe_shell | YFB_gill_tissue | 0.002525 | yes |
YFB_stipe_shell | YFB_veil | 0.000613 | yes |
YFB_stipe_skin | YFB_cap_skin | 0.165674 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.034837 | yes |
YFB_stipe_skin | YFB_gill_tissue | 0.186180 | no |
YFB_stipe_skin | YFB_veil | 0.066022 | no |
YFB_cap_skin | YFB_cap_tissue | 0.575324 | no |
YFB_cap_skin | YFB_gill_tissue | 0.992640 | no |
YFB_cap_skin | YFB_veil | 0.814245 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.574936 | no |
YFB_cap_tissue | YFB_veil | 0.829882 | no |
YFB_gill_tissue | YFB_veil | 0.805022 | no |
Initials | DIF_gill_tissue | 0.000613 | yes |
Initials | YFB_stipe_center | 0.000613 | yes |
Initials | YFB_stipe_shell | 0.000613 | yes |
Initials | YFB_stipe_skin | 0.000613 | yes |
Initials | YFB_cap_skin | 0.000613 | yes |
Initials | YFB_cap_tissue | 0.000613 | yes |
Initials | YFB_gill_tissue | 0.000613 | yes |
Initials | YFB_veil | 0.000613 | yes |
Initials | Pileal_Stipeal_center | 0.000613 | yes |
Initials | Pileal_Stipeal_shell | 0.000613 | yes |
Initials | DIF_stipe_center | 0.000613 | yes |
Initials | DIF_stipe_shell | 0.000613 | yes |
Initials | DIF_stipe_skin | 0.000613 | yes |
Initials | DIF_cap_skin | 0.000613 | yes |
Initials | DIF_cap_tissue | 0.000613 | yes |
Pileal_Stipeal_center | DIF_gill_tissue | 0.614092 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.000613 | yes |
Pileal_Stipeal_center | YFB_stipe_shell | 0.051932 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.989789 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.178201 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.036455 | yes |
Pileal_Stipeal_center | YFB_gill_tissue | 0.198062 | no |
Pileal_Stipeal_center | YFB_veil | 0.072510 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.734195 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.175547 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.939601 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.676291 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.033211 | yes |
Pileal_Stipeal_center | DIF_cap_tissue | 0.447694 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.920020 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.012274 | yes |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.720095 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.442957 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.109313 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.464287 | no |
Pileal_Stipeal_shell | YFB_veil | 0.213655 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.043983 | yes |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.638493 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.325777 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.117779 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.790953 | no |
DIF_stipe_center | DIF_gill_tissue | 0.032504 | yes |
DIF_stipe_center | YFB_stipe_center | 0.038495 | yes |
DIF_stipe_center | YFB_stipe_shell | 0.735920 | no |
DIF_stipe_center | YFB_stipe_skin | 0.173347 | no |
DIF_stipe_center | YFB_cap_skin | 0.004548 | yes |
DIF_stipe_center | YFB_cap_tissue | 0.001140 | yes |
DIF_stipe_center | YFB_gill_tissue | 0.005671 | yes |
DIF_stipe_center | YFB_veil | 0.001140 | yes |
DIF_stipe_center | DIF_stipe_shell | 0.230028 | no |
DIF_stipe_center | DIF_stipe_skin | 0.504737 | no |
DIF_stipe_center | DIF_cap_skin | 0.001625 | yes |
DIF_stipe_center | DIF_cap_tissue | 0.014956 | yes |
DIF_stipe_shell | DIF_gill_tissue | 0.514796 | no |
DIF_stipe_shell | YFB_stipe_center | 0.000613 | yes |
DIF_stipe_shell | YFB_stipe_shell | 0.075908 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.950669 | no |
DIF_stipe_shell | YFB_cap_skin | 0.127930 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.028918 | yes |
DIF_stipe_shell | YFB_gill_tissue | 0.148101 | no |
DIF_stipe_shell | YFB_veil | 0.053150 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.774343 | no |
DIF_stipe_shell | DIF_cap_skin | 0.024946 | yes |
DIF_stipe_shell | DIF_cap_tissue | 0.358752 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.237447 | no |
DIF_stipe_skin | YFB_stipe_center | 0.001625 | yes |
DIF_stipe_skin | YFB_stipe_shell | 0.210782 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.692783 | no |
DIF_stipe_skin | YFB_cap_skin | 0.041603 | yes |
DIF_stipe_skin | YFB_cap_tissue | 0.006742 | yes |
DIF_stipe_skin | YFB_gill_tissue | 0.055182 | no |
DIF_stipe_skin | YFB_veil | 0.012880 | yes |
DIF_stipe_skin | DIF_cap_skin | 0.006742 | yes |
DIF_stipe_skin | DIF_cap_tissue | 0.138841 | no |
DIF_cap_skin | DIF_gill_tissue | 0.202801 | no |
DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
DIF_cap_skin | YFB_stipe_skin | 0.032978 | yes |
DIF_cap_skin | YFB_cap_skin | 0.651813 | no |
DIF_cap_skin | YFB_cap_tissue | 0.949958 | no |
DIF_cap_skin | YFB_gill_tissue | 0.640630 | no |
DIF_cap_skin | YFB_veil | 0.889125 | no |
DIF_cap_skin | DIF_cap_tissue | 0.311935 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.898994 | no |
DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
DIF_cap_tissue | YFB_stipe_shell | 0.004548 | yes |
DIF_cap_tissue | YFB_stipe_skin | 0.424949 | no |
DIF_cap_tissue | YFB_cap_skin | 0.742064 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.264404 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.758436 | no |
DIF_cap_tissue | YFB_veil | 0.468486 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|073850 MSTANVNSNNLSGTVLVHGDRGVHYSKAAGGAISPAISVSTTFRTAHPDENVTPIPELQFRDPERHIYSRYTQEV SGRAEQVLSKILNGYAITYPSGLSAAYSVLIHYQPKRIAVRGGYHGCHESFVMYQKSRSDAEVIDLDADYKPGDL CWLETPVNPYGESRDIQYYAEKIHQVGGKLIVDSTFAPPPLQDPFRFGADCILHSGTKYLGGHSDLLCGVLVVKN EEEWNELWNIRTFTGCSMGSLEAWLLLRSLKTLHLRVPRQSETATVLAKWLQSVSKTASGQSSEGIPGGLVKSVW HSSLQGTDARGFNPQSQMTGGYNPTFSIALASPELASKFAHMLEYFMPATSLGGVESLVEHRRGTDPNTDPKLVR LSIGVEELDDLKADLRQALQKLGEIQA* |
Coding | >AgabiH97|073850 ATGTCTACTGCTAACGTTAACAGTAACAACTTAAGCGGGACGGTTCTTGTTCACGGGGATCGTGGAGTACATTAT TCCAAGGCTGCCGGCGGTGCGATATCGCCTGCCATCTCGGTCTCAACAACATTCAGGACTGCTCATCCCGATGAA AATGTCACTCCAATACCCGAGCTGCAGTTCCGGGATCCAGAAAGACACATCTATTCTCGATACACTCAAGAAGTT TCCGGTCGGGCGGAACAGGTGCTGAGCAAGATTTTGAATGGATATGCTATCACCTATCCGTCTGGGTTAAGCGCA GCTTATTCTGTTCTGATTCATTACCAACCGAAACGCATCGCAGTGAGAGGAGGATACCATGGATGCCATGAAAGC TTTGTGATGTATCAGAAGTCGCGATCGGATGCGGAGGTCATTGATCTAGATGCTGATTACAAGCCAGGGGATCTT TGTTGGCTGGAGACACCTGTTAATCCTTATGGTGAATCTAGAGATATCCAGTACTATGCCGAAAAGATCCATCAG GTTGGCGGAAAGTTGATTGTGGACTCGACTTTCGCTCCTCCCCCCCTTCAAGATCCCTTTAGGTTCGGGGCAGAT TGTATCCTACACTCCGGTACTAAATATCTTGGTGGTCATAGTGACCTACTCTGCGGAGTTCTTGTTGTAAAAAAT GAGGAAGAATGGAACGAGTTATGGAATATTCGTACGTTCACAGGATGCAGCATGGGTTCATTAGAGGCATGGCTC CTCTTGCGTTCTCTCAAGACCCTGCACCTCCGTGTTCCTCGCCAATCTGAAACGGCCACGGTACTTGCAAAGTGG CTGCAATCTGTTTCGAAAACTGCAAGTGGCCAGAGTTCTGAAGGTATCCCTGGAGGTCTCGTGAAGAGTGTCTGG CACTCCTCTCTCCAAGGGACTGATGCACGCGGTTTCAACCCTCAAAGTCAAATGACAGGTGGATATAACCCTACC TTCTCCATTGCGCTCGCAAGCCCAGAATTAGCCTCGAAGTTTGCACACATGCTGGAGTACTTCATGCCTGCAACG AGTCTTGGTGGGGTTGAGTCACTCGTGGAGCACAGGAGAGGGACCGACCCAAACACAGACCCGAAACTAGTTAGA TTGAGCATCGGCGTCGAGGAACTAGATGATTTGAAAGCCGATCTACGTCAGGCGTTGCAGAAACTGGGGGAGATC CAAGCTTAA |
Transcript | >AgabiH97|073850 ATGTCTACTGCTAACGTTAACAGTAACAACTTAAGCGGGACGGTTCTTGTTCACGGGGATCGTGGAGTACATTAT TCCAAGGCTGCCGGCGGTGCGATATCGCCTGCCATCTCGGTCTCAACAACATTCAGGACTGCTCATCCCGATGAA AATGTCACTCCAATACCCGAGCTGCAGTTCCGGGATCCAGAAAGACACATCTATTCTCGATACACTCAAGAAGTT TCCGGTCGGGCGGAACAGGTGCTGAGCAAGATTTTGAATGGATATGCTATCACCTATCCGTCTGGGTTAAGCGCA GCTTATTCTGTTCTGATTCATTACCAACCGAAACGCATCGCAGTGAGAGGAGGATACCATGGATGCCATGAAAGC TTTGTGATGTATCAGAAGTCGCGATCGGATGCGGAGGTCATTGATCTAGATGCTGATTACAAGCCAGGGGATCTT TGTTGGCTGGAGACACCTGTTAATCCTTATGGTGAATCTAGAGATATCCAGTACTATGCCGAAAAGATCCATCAG GTTGGCGGAAAGTTGATTGTGGACTCGACTTTCGCTCCTCCCCCCCTTCAAGATCCCTTTAGGTTCGGGGCAGAT TGTATCCTACACTCCGGTACTAAATATCTTGGTGGTCATAGTGACCTACTCTGCGGAGTTCTTGTTGTAAAAAAT GAGGAAGAATGGAACGAGTTATGGAATATTCGTACGTTCACAGGATGCAGCATGGGTTCATTAGAGGCATGGCTC CTCTTGCGTTCTCTCAAGACCCTGCACCTCCGTGTTCCTCGCCAATCTGAAACGGCCACGGTACTTGCAAAGTGG CTGCAATCTGTTTCGAAAACTGCAAGTGGCCAGAGTTCTGAAGGTATCCCTGGAGGTCTCGTGAAGAGTGTCTGG CACTCCTCTCTCCAAGGGACTGATGCACGCGGTTTCAACCCTCAAAGTCAAATGACAGGTGGATATAACCCTACC TTCTCCATTGCGCTCGCAAGCCCAGAATTAGCCTCGAAGTTTGCACACATGCTGGAGTACTTCATGCCTGCAACG AGTCTTGGTGGGGTTGAGTCACTCGTGGAGCACAGGAGAGGGACCGACCCAAACACAGACCCGAAACTAGTTAGA TTGAGCATCGGCGTCGAGGAACTAGATGATTTGAAAGCCGATCTACGTCAGGCGTTGCAGAAACTGGGGGAGATC CAAGCTTAA |
Gene | >AgabiH97|073850 ATGTCTACTGCTAACGTTAACAGTAACAACTTAAGCGGGACGGTTCTTGTTCACGGGGATCGTGGAGTACATTAT TCCAAGGCTGCCGGCGGTGCGATATCGCCTGCCATCTCGGTCTCAACAAGTGAGCCTGTCTTTGATAGGCTTATC GAACCTGGAGAATATCCTACTGATGGCCCTTTCCTATAGCATTCAGGACTGCTCATCCCGATGAAAATGTCACTC CAATACCCGAGCTGCAGTTCCGGGATCCAGAAAGACACATCTATTCTCGATACACTCAAGAAGTTTCCGGTCGGG CGGAACAGGTGCTGAGCAAGATTTTGGTAGGATTTGGCAATCAGTAATGACTGATTTGACTGATACCTGTTGCCT TCGCGCCGTTTAGAATGGATATGCTATCACCTATCCGTCTGGGTTAAGCGCAGCTTATTCTGTAAGTTCCCTGAC ACGTTAATGATAATCAGGGGATCAATCAACTTTAACCGTCTCGAGGTTCTGATTCATTACCAACCGAAACGCATC GCAGTGAGAGGAGGATACCATGGATGCCATGAAAGCTTTGTGATGTATCAGAAGTCGCGATCGGATGCGGAGGTC ATTGATCTAGATGCTGATTACAAGCCAGGGGATCTTTGTTGGCTGGAGACACCTGTTAATCCTTATGGTGAATCT AGGTAAGCCTGTGTTTCGGTATTATATCTTTTCGGTCGAGTAACATATTTGATACTCTTCATGGATCAGAGATAT CCAGTACTATGCCGAAAAGGTGTATAATACAGTTCTAGCTCTTCTTTTACTGCAAAGTTGATGATGTTGGGGTAT AGATCCATCAGGTTGGCGGAAAGTTGATTGTGGACTCGACTTTCGCTCCTCCCCCCCTTCAAGATCCCTTTAGGT TCGGGGCAGATTGGTGTGTTGTTTTCATTTAACAGTTTGCATGCGCCTAATTTATGTAATCATAGTATCCTACAC TCCGGTAAGTCAAGTGCTTTCGGCGAATACAGAAAACGCGATATTAAAGGAGGCAAGGTACTAAATATCTTGGTG GTCATAGTGACCTACTCTGCGGAGTTCTTGTTGTAAAAAATGAGGAAGAATGGAACGAGGTAAACCTGCCCTCGC TGTTCACGATTTCGTCGGGCTTCATAATTATGACCAATTCAGTTATGGAATATTCGTACGTTCACAGGATGCAGC ATGGGTTCATTAGAGGCATGGCTCCTCTTGCGTTCTCTCAAGACCCTGCACCTCCGTGTTCCTCGCCAATCTGAA ACGGCCACGGTACTTGCAAAGTGGCTGCAATCTGTTTCGAAAACTGCAAGTGGCCAGAGTTCTGAAGGTATCCCT GGAGGTCTCGTGAAGAGTGTCTGGCACTCCTCTCTCCAAGGGACTGATGCACGCGGTTTCAACCCTCAAAGTCAA ATGACAGGTGGATATAACCCTACCTTCTCCATTGCGGTTAGTTGCAACCATCTGTGAAGCGGGGCGGTTCATGTG ATCTTCTCAATAGCTCGCAAGCCCAGAATTAGCCTCGAAGTTTGCACACATGCTGGAGTACTTCATGGTCAGTAC CTCCAAAATTGCATCGATCATCAGACTACAATGATCAGTTCTCATAGCCTGCAACGAGTCTTGGTGGGGTTGAGT CACTCGTGGAGCACAGGAGAGGGACCGACCCAAACACAGACCCGAAACTAGTTAGATTGAGCATCGGCGTCGAGG AACTAGATGTTAGAATCATTTTTGTTCATCCCTACACCAGCTGATATTTGATCGGTACAGGATTTGAAAGCCGAT CTACGTCAGGCGTTGCAGAAACTGGGGGAGGTGAGTTCGATACCTTTACGGATATATAGACATATACCGATGGCA TTTTCAGATCCAAGCTTAA |