© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|073360 |
| Gene name | |
| Location | scaffold_4:1931364..1932350 |
| Strand | - |
| Gene length (bp) | 986 |
| Transcript length (bp) | 660 |
| Coding sequence length (bp) | 660 |
| Protein length (aa) | 220 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03357 | Snf7 | Snf7 | 7.6E-33 | 22 | 199 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CR55|SNF7_CRYNB | Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SNF7 PE=3 SV=1 | 2 | 219 | 1.0E-62 |
| sp|P0CR54|SNF7_CRYNJ | Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SNF7 PE=3 SV=1 | 2 | 219 | 1.0E-62 |
| sp|Q9P7F7|SNF7_SCHPO | Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf7 PE=3 SV=1 | 2 | 219 | 2.0E-39 |
| sp|Q871Y8|SNF7_NEUCR | Vacuolar-sorting protein snf7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=vsp-3 PE=3 SV=1 | 2 | 219 | 1.0E-34 |
| sp|P0C149|SNF7_MAGO7 | Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1 | 2 | 219 | 3.0E-34 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CR55|SNF7_CRYNB | Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SNF7 PE=3 SV=1 | 2 | 219 | 1.0E-62 |
| sp|P0CR54|SNF7_CRYNJ | Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SNF7 PE=3 SV=1 | 2 | 219 | 1.0E-62 |
| sp|Q9P7F7|SNF7_SCHPO | Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf7 PE=3 SV=1 | 2 | 219 | 2.0E-39 |
| sp|Q871Y8|SNF7_NEUCR | Vacuolar-sorting protein snf7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=vsp-3 PE=3 SV=1 | 2 | 219 | 1.0E-34 |
| sp|P0C149|SNF7_MAGO7 | Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1 | 2 | 219 | 3.0E-34 |
| sp|Q6BSH2|SNF7_DEBHA | Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SNF7 PE=3 SV=2 | 2 | 219 | 3.0E-32 |
| sp|Q6FW96|SNF7_CANGA | Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7 PE=3 SV=1 | 5 | 156 | 7.0E-26 |
| sp|P39929|SNF7_YEAST | Vacuolar-sorting protein SNF7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF7 PE=1 SV=1 | 1 | 147 | 5.0E-25 |
| sp|Q753W3|SNF7_ASHGO | Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3 SV=1 | 2 | 156 | 9.0E-25 |
| sp|Q5B5E0|SNF7_EMENI | Vacuolar-sorting protein snf7 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=snf7 PE=1 SV=1 | 5 | 184 | 3.0E-24 |
| sp|Q5ABD0|SNF7_CANAL | Vacuolar-sorting protein SNF7 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SNF7 PE=3 SV=1 | 5 | 147 | 2.0E-23 |
| sp|Q6CBS3|SNF7_YARLI | Vacuolar-sorting protein SNF7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SNF7 PE=3 SV=1 | 5 | 219 | 7.0E-23 |
| sp|Q6CJL0|SNF7_KLULA | Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SNF7 PE=3 SV=1 | 5 | 147 | 2.0E-21 |
| sp|Q6IQ73|CHM4C_DANRE | Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1 | 20 | 147 | 1.0E-19 |
| sp|Q5ZHP5|CHM4B_CHICK | Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1 | 18 | 147 | 2.0E-19 |
| sp|Q9H444|CHM4B_HUMAN | Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1 | 20 | 147 | 4.0E-19 |
| sp|Q9D8B3|CHM4B_MOUSE | Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=1 SV=2 | 20 | 147 | 4.0E-19 |
| sp|Q7ZVC4|CHM4B_DANRE | Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1 | 20 | 147 | 5.0E-19 |
| sp|Q6GL11|CHM4B_XENTR | Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1 | 10 | 147 | 1.0E-18 |
| sp|Q5XGW6|CHM4B_XENLA | Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1 | 10 | 147 | 1.0E-18 |
| sp|Q6GNN8|CHM4C_XENLA | Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c PE=2 SV=1 | 11 | 147 | 2.0E-18 |
| sp|O82197|VP321_ARATH | Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1 | 5 | 219 | 4.0E-18 |
| sp|Q86H98|CHMP4_DICDI | Charged multivesicular body protein 4 OS=Dictyostelium discoideum GN=chmp4 PE=3 SV=1 | 6 | 147 | 3.0E-17 |
| sp|Q9D7F7|CHM4C_MOUSE | Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c PE=2 SV=1 | 2 | 147 | 5.0E-17 |
| sp|Q96CF2|CHM4C_HUMAN | Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C PE=1 SV=1 | 2 | 147 | 1.0E-16 |
| sp|Q569C1|CHM4C_RAT | Charged multivesicular body protein 4c OS=Rattus norvegicus GN=Chmp4c PE=2 SV=1 | 2 | 147 | 2.0E-16 |
| sp|A2VDY3|CHM4A_BOVIN | Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2 SV=1 | 2 | 147 | 6.0E-16 |
| sp|Q9BY43|CHM4A_HUMAN | Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A PE=1 SV=3 | 2 | 147 | 1.0E-15 |
| sp|P59074|CHM4P_HUMAN | Putative charged multivesicular body protein 4B-like protein CHMP4BP1 OS=Homo sapiens GN=CHMP4BP1 PE=5 SV=1 | 32 | 147 | 1.0E-11 |
| sp|Q9SZE4|VP322_ARATH | Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1 | 58 | 219 | 5.0E-09 |
| sp|Q9VVI9|CHMP5_DROME | Charged multivesicular body protein 5 OS=Drosophila melanogaster GN=Vps60 PE=1 SV=2 | 6 | 206 | 2.0E-07 |
| sp|P0C0A3|CHMP6_MOUSE | Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=1 SV=2 | 7 | 199 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0007034 | vacuolar transport | Yes |
| GO:0051641 | cellular localization | No |
| GO:0051179 | localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|073360 MMASFMSYFGGRRDPKQAARDAIVGLRQQLQLLEKKEEHLQKKIDDEMVKARANAVSNKAAATAALKRKKAAELE LDRLSATRLQLELQVNTLESANLNAETMAAMKKGADALKVIHGGTTPDKVADTMDSIHAEREVANEISTAIAANP YADPTEDAELLQELNALEEDVLNERLAGADHVPVHVPPGAVKAPEAPKKVTVEDDEEAQLRELQAQLAL* |
| Coding | >AgabiH97|073360 ATGATGGCTAGCTTTATGAGCTACTTTGGAGGACGCAGAGACCCCAAACAGGCTGCGCGAGACGCCATAGTTGGT CTCCGACAGCAGTTACAACTTTTGGAGAAGAAAGAGGAACATCTCCAGAAGAAGATAGACGACGAGATGGTGAAA GCGCGGGCTAATGCTGTTTCCAACAAAGCTGCCGCAACAGCAGCTCTCAAACGCAAAAAGGCCGCCGAACTCGAA CTCGATCGTCTAAGTGCAACACGACTACAACTTGAACTCCAAGTAAACACCCTCGAATCAGCCAATCTCAATGCC GAAACCATGGCAGCGATGAAGAAAGGCGCCGATGCGCTCAAAGTTATCCATGGAGGAACCACCCCCGATAAAGTT GCCGATACTATGGATTCTATTCACGCAGAACGAGAAGTTGCGAATGAGATTTCGACGGCTATTGCAGCTAATCCT TATGCTGACCCTACGGAAGATGCGGAATTACTCCAAGAGCTCAATGCGCTCGAGGAAGATGTGCTTAATGAACGT TTGGCAGGCGCAGATCATGTTCCCGTGCATGTACCACCTGGCGCAGTCAAAGCCCCAGAAGCTCCGAAGAAGGTT ACAGTGGAAGACGACGAGGAAGCTCAACTACGAGAACTACAAGCCCAATTAGCATTGTAA |
| Transcript | >AgabiH97|073360 ATGATGGCTAGCTTTATGAGCTACTTTGGAGGACGCAGAGACCCCAAACAGGCTGCGCGAGACGCCATAGTTGGT CTCCGACAGCAGTTACAACTTTTGGAGAAGAAAGAGGAACATCTCCAGAAGAAGATAGACGACGAGATGGTGAAA GCGCGGGCTAATGCTGTTTCCAACAAAGCTGCCGCAACAGCAGCTCTCAAACGCAAAAAGGCCGCCGAACTCGAA CTCGATCGTCTAAGTGCAACACGACTACAACTTGAACTCCAAGTAAACACCCTCGAATCAGCCAATCTCAATGCC GAAACCATGGCAGCGATGAAGAAAGGCGCCGATGCGCTCAAAGTTATCCATGGAGGAACCACCCCCGATAAAGTT GCCGATACTATGGATTCTATTCACGCAGAACGAGAAGTTGCGAATGAGATTTCGACGGCTATTGCAGCTAATCCT TATGCTGACCCTACGGAAGATGCGGAATTACTCCAAGAGCTCAATGCGCTCGAGGAAGATGTGCTTAATGAACGT TTGGCAGGCGCAGATCATGTTCCCGTGCATGTACCACCTGGCGCAGTCAAAGCCCCAGAAGCTCCGAAGAAGGTT ACAGTGGAAGACGACGAGGAAGCTCAACTACGAGAACTACAAGCCCAATTAGCATTGTAA |
| Gene | >AgabiH97|073360 ATGATGGCTAGCTTTATGAGCTACTTTGGAGGACGCAGAGACCCCAAACAGGCTGCGCGAGACGCCATAGTTGGT CTCCGACAGCAGTTACAACTTTTGGAGAAGAAAGAGGAACATCTCCAGAAGAAGATAGACGACGAGATGGTGAAA GCGCGGGCTAATGCTGTTTCCAACAAAGCTGGTGAGTTCCTTCACGCTACCATGGAATCTTGGTCGTGTTCTCGG TGTACCGTCACTAACTCTCCATCCCTTTCAACCGCCGCCTTCTCGCAATTTATCCTTTGGATTGCTCTTGCTTCT TTATCCACATCCTCGTACCGTACCTCCGGATTCTCGCATGAACACTACGTCTAAACCACACACTTCGGTCCACTG CCATCAACAAAACAGCCGCAACAGCAGCTCTCAAACGCAAAAAGGCCGCCGAACTCGAACTCGATCGTCTAAGTG CAACACGACTACAACTTGAACTCCAAGTAAACACCCTCGAATCAGCCAATCTCAATGCCGAAACCATGGCAGCGA TGAAGAAAGGCGCCGATGCGCTCAAAGTTATCCATGGAGGAACCACCCCCGATAAAGTTGCCGATACTATGGATT CTATTCACGCAGAACGAGAAGTTGCGAATGAGATTTCGACGGCTATTGCAGCTAATCCTTATGCTGACCCTACGG AAGATGTGAGAAGTTCTCCCGCTCTTTCTTTCGTTCTTATCATTGAACGGTTTATCAGGCGGAATTACTCCAAGA GCTCAATGCGCTCGAGGAAGATGTGCTTAATGAACGTTTGGCAGGCGCAGATCATGTTCCCGTGCATGTACCACC TGGCGCAGTCAAAGCCCCAGAAGGTAAGCTCTCATATAGTACCGTCTTCATAAGCTACTGCCTCGTGTATTCACA TCTTTTATCAAGCTCCGAAGAAGGTTACAGTGGAAGACGACGAGGAAGCTCAACTACGAGAACTACAAGCCCAAT TAGCATTGTAA |