Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|073320
Gene name
Location	scaffold_4:1924234..1925568
Strand	-
Gene length (bp)	1334
Transcript length (bp)	1134
Coding sequence length (bp)	1134
Protein length (aa)	378

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13445	zf-RING_UBOX	RING-type zinc-finger	4.3E-06	46	96
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	5.7E-05	46	98

Swissprot hits

(None)

GO

GO Term	Description	Terminal node
GO:0046872	metal ion binding	Yes
GO:0003674	molecular_function	No
GO:0043167	ion binding	No
GO:0005488	binding	No
GO:0043169	cation binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|073320 MDQDSNLAAVQLVRDAFCLSATDRARQFAEKLPILSKDDIPLEDYCPICLVPFLEILSLTRDTLDDPGVTKLEGC GHIFCRRDLIEWVKTQHGNCPTCRFQFMPPDMVFGDDGSSDGGEYIPPSEGDEDFDIDFDYAESEFWATEDYEDD LAISTISPEENMRREAMMQLWDDEDDASIADEVQESDDHEVFGEMEEFDYDQDPIETTQEVSDPLEVEMAHEPEH DPFSCFDPVDELQHDPDYTPDDVDVPDEIEALGLEDDGCSDSMDPNLGGEVDWGLADGEHAPDDVNIRDEIEALN ALEADGCSDSIDPNLEGEVDWDGDYTPDDVNIRDEIEALNALEADGCSDSIDPNLEGEVEWGSTVEDLGDSSFNE VW*
Coding	>AgabiH97\|073320 ATGGACCAGGACTCGAATCTCGCAGCTGTGCAGCTTGTCCGCGATGCTTTCTGTCTCTCCGCCACCGACCGTGCA AGACAGTTCGCTGAGAAGCTCCCTATCTTATCCAAGGACGACATTCCGCTCGAGGACTATTGCCCAATCTGCCTG GTTCCGTTTTTAGAAATATTGAGTCTTACACGGGATACGCTGGATGATCCAGGTGTCACCAAGCTCGAAGGTTGT GGTCATATCTTCTGTCGCAGAGACTTGATAGAATGGGTCAAGACACAACATGGAAACTGCCCTACCTGTCGTTTT CAATTTATGCCTCCTGATATGGTATTCGGAGATGATGGTTCGTCTGACGGTGGCGAATATATTCCACCATCCGAA GGTGACGAAGATTTCGATATCGATTTTGACTATGCGGAGTCAGAATTCTGGGCTACTGAGGACTATGAGGACGAC CTTGCAATATCCACCATTTCTCCCGAAGAAAACATGCGTCGTGAAGCTATGATGCAACTATGGGATGACGAAGAT GACGCAAGCATTGCCGACGAAGTCCAGGAGTCTGATGACCATGAAGTTTTCGGAGAAATGGAAGAATTCGACTAT GACCAGGACCCTATAGAAACCACTCAAGAGGTTTCAGATCCTTTGGAAGTGGAAATGGCACATGAACCGGAACAC GATCCGTTTTCATGTTTTGATCCGGTAGATGAACTTCAGCATGATCCGGATTATACGCCGGACGACGTTGATGTT CCTGACGAAATAGAAGCGCTTGGCCTCGAAGATGATGGTTGCTCAGACTCGATGGATCCAAACCTGGGGGGAGAA GTTGACTGGGGTTTGGCCGATGGGGAGCATGCGCCAGACGACGTCAATATCCGTGACGAAATAGAAGCATTGAAC GCCCTCGAAGCTGACGGCTGCTCAGACTCGATAGATCCAAACCTGGAGGGAGAAGTTGACTGGGATGGTGATTAT ACGCCAGATGACGTCAATATCCGTGACGAAATAGAAGCATTGAACGCCCTCGAAGCTGACGGCTGCTCAGACTCA ATAGATCCAAACTTGGAGGGAGAAGTTGAATGGGGTTCTACAGTCGAGGATCTGGGCGACTCTTCTTTTAATGAA GTATGGTAG
Transcript	>AgabiH97\|073320 ATGGACCAGGACTCGAATCTCGCAGCTGTGCAGCTTGTCCGCGATGCTTTCTGTCTCTCCGCCACCGACCGTGCA AGACAGTTCGCTGAGAAGCTCCCTATCTTATCCAAGGACGACATTCCGCTCGAGGACTATTGCCCAATCTGCCTG GTTCCGTTTTTAGAAATATTGAGTCTTACACGGGATACGCTGGATGATCCAGGTGTCACCAAGCTCGAAGGTTGT GGTCATATCTTCTGTCGCAGAGACTTGATAGAATGGGTCAAGACACAACATGGAAACTGCCCTACCTGTCGTTTT CAATTTATGCCTCCTGATATGGTATTCGGAGATGATGGTTCGTCTGACGGTGGCGAATATATTCCACCATCCGAA GGTGACGAAGATTTCGATATCGATTTTGACTATGCGGAGTCAGAATTCTGGGCTACTGAGGACTATGAGGACGAC CTTGCAATATCCACCATTTCTCCCGAAGAAAACATGCGTCGTGAAGCTATGATGCAACTATGGGATGACGAAGAT GACGCAAGCATTGCCGACGAAGTCCAGGAGTCTGATGACCATGAAGTTTTCGGAGAAATGGAAGAATTCGACTAT GACCAGGACCCTATAGAAACCACTCAAGAGGTTTCAGATCCTTTGGAAGTGGAAATGGCACATGAACCGGAACAC GATCCGTTTTCATGTTTTGATCCGGTAGATGAACTTCAGCATGATCCGGATTATACGCCGGACGACGTTGATGTT CCTGACGAAATAGAAGCGCTTGGCCTCGAAGATGATGGTTGCTCAGACTCGATGGATCCAAACCTGGGGGGAGAA GTTGACTGGGGTTTGGCCGATGGGGAGCATGCGCCAGACGACGTCAATATCCGTGACGAAATAGAAGCATTGAAC GCCCTCGAAGCTGACGGCTGCTCAGACTCGATAGATCCAAACCTGGAGGGAGAAGTTGACTGGGATGGTGATTAT ACGCCAGATGACGTCAATATCCGTGACGAAATAGAAGCATTGAACGCCCTCGAAGCTGACGGCTGCTCAGACTCA ATAGATCCAAACTTGGAGGGAGAAGTTGAATGGGGTTCTACAGTCGAGGATCTGGGCGACTCTTCTTTTAATGAA GTATGGTAG
Gene	>AgabiH97\|073320 ATGGACCAGGACTCGAATCTCGCAGCTGTGCAGCTTGTCCGCGATGCTTTCTGTCTCTCCGCCACCGACCGTGCA AGACAGTTCGCTGAGAAGCTCCCTATCTTATCCAAGGACGACATTCCGCTCGAGGACTATTGCCCAATCTGCCTG GTTCCGTTTTTAGAAATATTGAGTCTTACACGGGATACGCTGGATGATCCAGGTGTCACCAAGCTCGAAGGTTGT GGTCATATCTTCTGTCGCAGAGAGTCAGTTGTGTTTGTTTTTACGTCTGTATCAAATTCATAACCCCGTGCCAGC TTGATAGAATGGGTCAAGACACAAGTGCGTCTTTTCATCATTCTTTATCGCCAGGCTCTCATGTATACATAGCAT GGAAACTGCCCTACCTGTCGTTTTCAATTTATGCCTCCTGATATGGTATTCGGAGATGATGGTTCGTCTGACGGT GGCGAATATATTCCACCATCCGAAGGTGACGAAGATTTCGATATCGATTTTGACTATGCGGAGTCAGAATTCTGG GCTACTGAGGACTATGAGGACGACCTTGCAATATCCACCATTTCTCCCGAAGAAAACATGCGTCGTGAAGCTATG ATGCAACTATGGGATGACGAAGATGACGCAAGCATTGCCGACGAAGTCCAGGAGTCTGATGACCATGAAGTTTTC GGAGAAATGGAAGAATTCGACTATGACCAGGACCCTATAGGTAAGGTCTTTGAGATGCGAATATGATATAGAGCT CATCGTTGAGTAGAAACCACTCAAGAGGTTTCAGATCCTTTGGAAGTGGAAATGGCACATGAACCGGAACACGAT CCGTTTTCATGTTTTGATCCGGTAGATGAACTTCAGCATGATCCGGATTATACGCCGGACGACGTTGATGTTCCT GACGAAATAGAAGCGCTTGGCCTCGAAGATGATGGTTGCTCAGACTCGATGGATCCAAACCTGGGGGGAGAAGTT GACTGGGGTTTGGCCGATGGGGAGCATGCGCCAGACGACGTCAATATCCGTGACGAAATAGAAGCATTGAACGCC CTCGAAGCTGACGGCTGCTCAGACTCGATAGATCCAAACCTGGAGGGAGAAGTTGACTGGGATGGTGATTATACG CCAGATGACGTCAATATCCGTGACGAAATAGAAGCATTGAACGCCCTCGAAGCTGACGGCTGCTCAGACTCAATA GATCCAAACTTGGAGGGAGAAGTTGAATGGGGTTCTACAGTCGAGGATCTGGGCGACTCTTCTTTTAATGAAGTG CGTTTATTTTCAGGTGTTCACACTGTCACTAACCCTTAATCTAATTGAAGGTATGGTAG

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