© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|072830 |
| Gene name | |
| Location | scaffold_4:1809908..1811595 |
| Strand | + |
| Gene length (bp) | 1687 |
| Transcript length (bp) | 1311 |
| Coding sequence length (bp) | 1311 |
| Protein length (aa) | 437 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase | 8.4E-24 | 142 | 255 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P82476|CDA_CRYNH | Chitin deacetylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_01239 PE=1 SV=3 | 36 | 359 | 6.0E-66 |
| sp|P0CP76|CDA_CRYNJ | Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 | 36 | 359 | 9.0E-65 |
| sp|P0CP77|CDA_CRYNB | Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 | 36 | 359 | 1.0E-64 |
| sp|Q06702|CDA1_YEAST | Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 | 112 | 310 | 7.0E-29 |
| sp|Q06703|CDA2_YEAST | Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 | 98 | 312 | 3.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P82476|CDA_CRYNH | Chitin deacetylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_01239 PE=1 SV=3 | 36 | 359 | 6.0E-66 |
| sp|P0CP76|CDA_CRYNJ | Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 | 36 | 359 | 9.0E-65 |
| sp|P0CP77|CDA_CRYNB | Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 | 36 | 359 | 1.0E-64 |
| sp|Q06702|CDA1_YEAST | Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 | 112 | 310 | 7.0E-29 |
| sp|Q06703|CDA2_YEAST | Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 | 98 | 312 | 3.0E-27 |
| sp|P50325|CDA_AMYRO | Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 | 148 | 321 | 8.0E-27 |
| sp|O34798|PDAC_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 | 145 | 334 | 4.0E-14 |
| sp|P04339|NODB_RHILV | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 | 148 | 331 | 8.0E-13 |
| sp|P54865|XYND_CELFI | Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 | 143 | 305 | 1.0E-11 |
| sp|P50354|NODB_RHIGA | Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 | 148 | 306 | 2.0E-11 |
| sp|Q59674|XY11A_CELJA | Bifunctional xylanase/xylan deacetylase OS=Cellvibrio japonicus GN=xyn11A PE=1 SV=1 | 143 | 324 | 7.0E-11 |
| sp|Q8DP63|PGDA_STRR6 | Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 | 146 | 335 | 2.0E-10 |
| sp|D4AM78|CDA_ARTBC | Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 | 142 | 340 | 1.0E-09 |
| sp|P83513|XY11A_PSEXY | Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 | 145 | 242 | 1.0E-09 |
| sp|P50352|NODB_BRAEL | Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 | 148 | 305 | 2.0E-09 |
| sp|Q04729|YFUM2_GEOSE | Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 | 148 | 331 | 2.0E-09 |
| sp|P04675|NODB_BRASP | Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 | 148 | 272 | 4.0E-09 |
| sp|Q52845|NODB_RHILO | Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 | 148 | 305 | 6.0E-09 |
| sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 143 | 340 | 1.0E-08 |
| sp|Q07740|NODB_AZOC5 | Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 | 129 | 305 | 3.0E-08 |
| sp|P02963|NODB_RHIME | Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 | 148 | 316 | 1.0E-07 |
| sp|P04676|NODB_RHILT | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 | 148 | 331 | 8.0E-07 |
| sp|P50850|YLXY_BACSU | Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 | 156 | 272 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Yes |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 16 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 418 | 435 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|072830 MLLASLLFIVPVFSAIVPGTSEPHEPSLTTSLDARWYHDSDHPVHALFRRGPTDGVAYAPVGSPLWSADFPESTP DSSNLPKAWVDALDAAVTAGKIPNLPTSISSHGSEPEYPDLDPSGAEICSSTYKCMQNSTNIWNAPDGYFASSFD DGPQPYTDALVEFLAKNKVKTTHFMIGTNILQYWEQFLTAWNHGDDIAVHTWTHPYMTTLSNLDVVAQLGWTMQL VHNSTGGRVPRFWRPPYGDSDNRVTAIAREVFSLETVIWNQDTDDWSINYGGTTEEEIGSEMDKWLSGPKSPGLI ILEHEDSDGALNSFMEAFPKIATNGWKFESLARILGGGQAYQNSFDADSEVKPVNLMAGQNNFTLMAKNVSTTTT PSPTSDLGASTAGNLAANTDYPTADPLANAAMTPPGQAQSLKWIFSTVLVASLITALFFWA* |
| Coding | >AgabiH97|072830 ATGCTGCTCGCCTCCCTGCTCTTTATCGTCCCGGTTTTTTCTGCAATAGTGCCTGGCACTTCAGAGCCTCACGAG CCCTCGCTCACTACATCTCTCGACGCTCGTTGGTACCACGACAGCGATCATCCCGTTCACGCCTTGTTCCGTAGA GGGCCGACGGACGGGGTCGCATATGCTCCCGTTGGTTCACCTCTCTGGTCGGCGGACTTTCCCGAGAGCACCCCC GACTCGAGTAATTTACCCAAGGCTTGGGTCGACGCTCTTGACGCCGCTGTGACGGCGGGAAAGATTCCAAACTTA CCGACCTCGATTAGTAGCCATGGTTCGGAGCCCGAATATCCAGACTTGGATCCAAGCGGGGCAGAAATATGTTCA TCAACCTACAAATGCATGCAAAATTCAACCAACATTTGGAACGCGCCGGATGGATATTTCGCGAGTTCCTTCGAC GACGGTCCACAGCCTTACACTGATGCACTCGTTGAATTTCTGGCGAAAAACAAAGTTAAAACGACGCATTTCATG ATTGGCACAAACATTCTCCAGTACTGGGAACAGTTTTTGACGGCCTGGAACCATGGAGATGACATCGCGGTGCAT ACATGGACCCACCCTTATATGACCACCCTCAGTAACTTGGACGTCGTCGCTCAGCTTGGATGGACGATGCAATTG GTCCACAATTCCACAGGTGGCCGTGTCCCTAGATTTTGGAGACCACCTTACGGCGACTCGGACAACCGTGTCACA GCCATAGCAAGAGAGGTATTTTCGCTTGAGACTGTCATCTGGAACCAAGACACCGATGATTGGAGTATCAACTAC GGCGGAACTACGGAGGAGGAGATTGGAAGTGAAATGGACAAATGGCTTAGCGGACCCAAGTCTCCTGGTCTTATC ATCTTGGAACATGAAGATTCTGATGGCGCCCTGAACTCTTTTATGGAGGCCTTTCCAAAGATCGCAACGAACGGC TGGAAGTTTGAGTCCCTGGCTCGTATATTAGGAGGCGGCCAAGCATACCAGAATTCCTTCGATGCTGATTCCGAG GTCAAGCCAGTCAACTTGATGGCTGGCCAGAACAACTTCACTTTGATGGCGAAGAACGTTTCGACGACAACCACG CCTTCGCCGACTTCCGACCTCGGGGCGTCGACGGCTGGCAACCTTGCCGCTAATACAGACTATCCAACTGCCGAT CCGCTGGCCAATGCTGCTATGACACCTCCAGGCCAGGCGCAGTCGTTGAAGTGGATTTTCTCGACGGTTTTAGTA GCATCCCTTATCACTGCCCTGTTTTTCTGGGCGTGA |
| Transcript | >AgabiH97|072830 ATGCTGCTCGCCTCCCTGCTCTTTATCGTCCCGGTTTTTTCTGCAATAGTGCCTGGCACTTCAGAGCCTCACGAG CCCTCGCTCACTACATCTCTCGACGCTCGTTGGTACCACGACAGCGATCATCCCGTTCACGCCTTGTTCCGTAGA GGGCCGACGGACGGGGTCGCATATGCTCCCGTTGGTTCACCTCTCTGGTCGGCGGACTTTCCCGAGAGCACCCCC GACTCGAGTAATTTACCCAAGGCTTGGGTCGACGCTCTTGACGCCGCTGTGACGGCGGGAAAGATTCCAAACTTA CCGACCTCGATTAGTAGCCATGGTTCGGAGCCCGAATATCCAGACTTGGATCCAAGCGGGGCAGAAATATGTTCA TCAACCTACAAATGCATGCAAAATTCAACCAACATTTGGAACGCGCCGGATGGATATTTCGCGAGTTCCTTCGAC GACGGTCCACAGCCTTACACTGATGCACTCGTTGAATTTCTGGCGAAAAACAAAGTTAAAACGACGCATTTCATG ATTGGCACAAACATTCTCCAGTACTGGGAACAGTTTTTGACGGCCTGGAACCATGGAGATGACATCGCGGTGCAT ACATGGACCCACCCTTATATGACCACCCTCAGTAACTTGGACGTCGTCGCTCAGCTTGGATGGACGATGCAATTG GTCCACAATTCCACAGGTGGCCGTGTCCCTAGATTTTGGAGACCACCTTACGGCGACTCGGACAACCGTGTCACA GCCATAGCAAGAGAGGTATTTTCGCTTGAGACTGTCATCTGGAACCAAGACACCGATGATTGGAGTATCAACTAC GGCGGAACTACGGAGGAGGAGATTGGAAGTGAAATGGACAAATGGCTTAGCGGACCCAAGTCTCCTGGTCTTATC ATCTTGGAACATGAAGATTCTGATGGCGCCCTGAACTCTTTTATGGAGGCCTTTCCAAAGATCGCAACGAACGGC TGGAAGTTTGAGTCCCTGGCTCGTATATTAGGAGGCGGCCAAGCATACCAGAATTCCTTCGATGCTGATTCCGAG GTCAAGCCAGTCAACTTGATGGCTGGCCAGAACAACTTCACTTTGATGGCGAAGAACGTTTCGACGACAACCACG CCTTCGCCGACTTCCGACCTCGGGGCGTCGACGGCTGGCAACCTTGCCGCTAATACAGACTATCCAACTGCCGAT CCGCTGGCCAATGCTGCTATGACACCTCCAGGCCAGGCGCAGTCGTTGAAGTGGATTTTCTCGACGGTTTTAGTA GCATCCCTTATCACTGCCCTGTTTTTCTGGGCGTGA |
| Gene | >AgabiH97|072830 ATGCTGCTCGCCTCCCTGCTCTTTATCGTCCCGGTTTTTTCTGCAATAGTGCCTGGCACTTCAGAGCCTCACGAG CCCTCGCTCACTACATCTCTCGACGCTCGTTGGTACCACGACAGCGATCATCCCGTTCACGCCTTGTTCCGTAGA GGGCCGACGGACGGGGTCGCATATGCTCCCGTTGGTTCACCTCGTAAGTTGAAACGTGCATACACTTGCTTCACT CCCATGAATCTTATCTCGCCTCCCCCCAGTCTGGTCGGCGGACTTTCCCGAGAGCACCCCCGACTCGAGTAATTT ACCCAAGGCTTGGGTCGACGCTCTTGACGCCGCTGTGACGGCGGGAAAGATTCCAAACTTACCGACCTCGATTAG TAGCCATGGTTCGGAGCCCGAATATCCAGACTTGGATCCAAGCGGGGCAGAAATATGTTCATCAACCTACAAATG CATGCAAAATTCAACCAACATTTGGAACGCGCCGGATGGATATTTCGCGAGTTCCTTCGACGACGGTCCACAGCC TGTAAGTCTCGATAGAACTATGCATAGAAAATCTTTTGAATTTTCTTGTAGTACACTGATGCACTCGTTGAATTT CTGGCGAAAAACAAAGTTAAAACGACGCATTTCATGATTGGCACAAACATTCTCCAGTACTGGGAACAGTTTTTG ACGGCCTGGAACCATGGAGATGACATCGCGGTGCATACATGGACCCACCCTTATATGACCACCCTCAGTAACTTG GACGTCGTCGCTCAGGTATGTCCCGGAAAAAAAAACAAGTTGTACCAGCCTTTCTCATGAACCGACAAGCTTGGA TGGACGATGCAATTGGTCCACAATTCCACAGGTGGCCGTGTCCCTAGATTTTGGAGACCACCTTACGGCGACTCG GACAACCGTGTCACAGCCATAGCAAGAGAGGTATACTCAAACTCACCTCTTTCTCTCTCTGAACTGATCACTAAT CATGTTTCCAAAAGGTATTTTCGCTTGAGACTGTCATCTGGAACCAAGAGTGCGTGGTCAGATTGTGACAAAGTG TATAGACTTTCTTAGAACCTTCCAGCACCGATGATTGGAGTATCAACTACGGCGGAACTACGGAGGAGGAGATTG GAAGTGAAATGGACAAATGGCTTAGCGGTGAGGTCATAGGACTTTGAAGACTTGGGAATTATCTACTAACTCAAT TTCAGGACCCAAGTCTCCTGGTCTTATCATCTTGGAACATGAAGATTCTGATGGCGCCCTGAACTCTTTTATGGA GGCCTTTCCAAAGATCGCAACGAACGGCTGGAAGTTTGAGTCCCTGGCTCGTATATTAGGAGGCGGCCAAGCATA CCAGAATTCCTTCGATGCTGATTCCGAGGTCAAGCCAGTCAACTTGATGGCTGGCCAGAACAACTTCACTTTGAT GGCGAAGAACGTTTCGACGACAACCACGCCTTCGCCGACTTCCGAGTCAGTGTCAATTCCGATTCCAAACGCGTC AGCTCACAGTCATGACAGCCTCGGGGCGTCGACGGCTGGCAACCTTGCCGCTAATACAGACTATCCAACTGCCGA TCCGCTGGCCAATGCTGCTATGACACCTCCAGGCCAGGCGCAGTCGTTGAAGTGGATTTTCTCGACGGTTTTAGT AGCATCCCTTATCACTGCCCTGTTTTTCTGGGCGTGA |