Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|072800
Gene name
Locationscaffold_4:1804486..1806240
Strand+
Gene length (bp)1754
Transcript length (bp)1650
Coding sequence length (bp)1650
Protein length (aa) 550

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00010 HLH Helix-loop-helix DNA-binding domain 2.0E-12 402 448

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q04635|ESC1_SCHPO Protein esc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esc1 PE=2 SV=1 394 474 1.0E-19
sp|Q07016|MAX_XENLA Protein max OS=Xenopus laevis GN=max PE=2 SV=1 388 468 4.0E-06

GO

GO Term Description Terminal node
GO:0046983 protein dimerization activity Yes
GO:0003674 molecular_function No
GO:0005515 protein binding No
GO:0005488 binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5406 0.8598 0.0602 0.0356 0.1259 0.0006 0.0509 0.0631 0.012 0.0029

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-loop-helix

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup4354
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|072800
Agaricus bisporus var bisporus H97 AgabiH97|072800 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|6_1

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|072800
MAPSDGSSSASPGMPSRLSPLPPLEYLQNQRRGSITDPSLHAAPPFRHDPDSDMPPDADPKSPYLTADHNHHHHH
HHHHPGNTSPHLRNLLRSPSLDLPHPHRPLDAPDPPSRSKLGYQGRDSIQKLNSDTDRNGLPRTHIRDPLPFDYN
MRRHSIATGQHPHPHPILPPVAHGIKRKLSMERSVFAPVGEEPDSQLVGPGVPSVMEVDPEPPAPKRRGSAIDTQ
RIAQLSLNDRRGSTDSRGPSVPWWNERRDSVSNPSSSGYSYSGRDSPHGRLPTSIAAFSWPGSQSSDPSTPTPNG
TEPNTPNIPRQFDASPSNTIPPLNYPPDRRMSVPDTLISPSGAYENFRSRSRPPSRQSHFAEPVTRANSVQDSAN
AAGQHPGFSLGKKDLSATPYSRSPELRVSHKLAERKRRKEMKDLFDELRDQLPADRGMKASKWEILTKAIDFVVN
LKQSHQDMVREIDRLRQELDIARGGSGSISSFQPPNPHVVYGQNPIVSSQGSHLQPPLPGPSQLPLPRQSTQNTY
PSITSSPPHPSPNGGFHRPDGTSP*
Coding >AgabiH97|072800
ATGGCTCCGTCGGACGGCAGCAGCAGCGCATCGCCGGGGATGCCCAGCCGCCTCTCGCCGCTCCCCCCGCTCGAG
TATCTCCAGAACCAGCGGCGCGGCTCCATCACAGATCCCTCTCTCCACGCCGCCCCGCCCTTCCGACACGACCCC
GACTCTGACATGCCGCCCGACGCCGACCCCAAGTCGCCCTACCTCACCGCCGACCACAACCACCACCACCACCAC
CACCATCATCACCCCGGAAACACCTCGCCCCATCTTCGCAATCTCCTCCGCTCCCCGTCCCTCGACCTCCCACAT
CCTCACCGCCCCCTCGACGCCCCCGATCCCCCCTCCCGCTCTAAATTAGGCTACCAAGGCAGAGATTCCATCCAG
AAGCTCAACAGTGACACCGATAGAAATGGCCTCCCCCGCACTCACATCCGTGACCCTCTTCCCTTCGACTATAAC
ATGCGCAGACACTCCATTGCCACTGGCCAGCATCCCCATCCCCACCCTATCCTTCCCCCGGTTGCGCATGGTATC
AAGCGCAAGTTGTCCATGGAGCGTTCCGTCTTTGCCCCCGTTGGCGAAGAGCCTGACTCACAACTAGTCGGCCCC
GGCGTCCCCAGCGTCATGGAAGTGGATCCAGAACCCCCTGCCCCCAAGCGACGGGGGTCCGCCATAGACACCCAG
CGGATAGCCCAGCTCAGTCTCAACGACAGGCGTGGCTCCACAGACTCCCGAGGTCCATCCGTCCCTTGGTGGAAT
GAACGCCGCGACTCTGTTTCCAATCCCTCCAGCTCAGGATACAGCTACTCTGGTCGAGATTCTCCGCATGGCCGG
CTCCCTACGAGCATCGCGGCTTTCTCGTGGCCCGGTTCACAGTCTAGCGATCCCTCAACCCCAACACCGAATGGA
ACTGAACCCAACACACCCAACATTCCCCGGCAGTTTGATGCAAGCCCTTCAAACACGATCCCACCATTGAATTAC
CCACCCGATCGACGTATGTCTGTACCAGATACCCTCATCTCCCCCAGCGGCGCATACGAAAATTTCCGATCCCGA
TCACGACCCCCTTCACGACAAAGCCATTTTGCTGAGCCAGTCACACGAGCCAACTCGGTCCAGGATAGTGCCAAT
GCTGCTGGCCAACATCCAGGTTTTTCCTTGGGAAAAAAGGACTTGAGTGCAACTCCTTATTCCCGCTCGCCAGAA
CTTAGAGTGTCGCATAAGCTTGCAGAACGGAAAAGACGGAAGGAGATGAAGGATTTATTCGACGAACTCAGGGAC
CAATTACCGGCAGATCGGGGCATGAAAGCCAGCAAGTGGGAGATCCTGACCAAAGCGATTGACTTTGTCGTAAAT
CTGAAGCAATCTCATCAAGACATGGTACGAGAAATTGACCGCCTCCGACAGGAACTCGATATAGCTCGCGGCGGT
TCGGGTTCTATTTCCTCTTTTCAACCGCCCAATCCCCATGTTGTCTACGGGCAGAATCCCATTGTCTCTTCACAA
GGATCCCATCTACAACCACCCCTTCCCGGTCCTAGCCAATTGCCTCTACCGCGACAATCGACCCAAAATACTTAT
CCCTCAATCACATCATCACCACCGCACCCTTCGCCCAACGGAGGGTTTCATCGGCCAGATGGCACTTCGCCGTGA
Transcript >AgabiH97|072800
ATGGCTCCGTCGGACGGCAGCAGCAGCGCATCGCCGGGGATGCCCAGCCGCCTCTCGCCGCTCCCCCCGCTCGAG
TATCTCCAGAACCAGCGGCGCGGCTCCATCACAGATCCCTCTCTCCACGCCGCCCCGCCCTTCCGACACGACCCC
GACTCTGACATGCCGCCCGACGCCGACCCCAAGTCGCCCTACCTCACCGCCGACCACAACCACCACCACCACCAC
CACCATCATCACCCCGGAAACACCTCGCCCCATCTTCGCAATCTCCTCCGCTCCCCGTCCCTCGACCTCCCACAT
CCTCACCGCCCCCTCGACGCCCCCGATCCCCCCTCCCGCTCTAAATTAGGCTACCAAGGCAGAGATTCCATCCAG
AAGCTCAACAGTGACACCGATAGAAATGGCCTCCCCCGCACTCACATCCGTGACCCTCTTCCCTTCGACTATAAC
ATGCGCAGACACTCCATTGCCACTGGCCAGCATCCCCATCCCCACCCTATCCTTCCCCCGGTTGCGCATGGTATC
AAGCGCAAGTTGTCCATGGAGCGTTCCGTCTTTGCCCCCGTTGGCGAAGAGCCTGACTCACAACTAGTCGGCCCC
GGCGTCCCCAGCGTCATGGAAGTGGATCCAGAACCCCCTGCCCCCAAGCGACGGGGGTCCGCCATAGACACCCAG
CGGATAGCCCAGCTCAGTCTCAACGACAGGCGTGGCTCCACAGACTCCCGAGGTCCATCCGTCCCTTGGTGGAAT
GAACGCCGCGACTCTGTTTCCAATCCCTCCAGCTCAGGATACAGCTACTCTGGTCGAGATTCTCCGCATGGCCGG
CTCCCTACGAGCATCGCGGCTTTCTCGTGGCCCGGTTCACAGTCTAGCGATCCCTCAACCCCAACACCGAATGGA
ACTGAACCCAACACACCCAACATTCCCCGGCAGTTTGATGCAAGCCCTTCAAACACGATCCCACCATTGAATTAC
CCACCCGATCGACGTATGTCTGTACCAGATACCCTCATCTCCCCCAGCGGCGCATACGAAAATTTCCGATCCCGA
TCACGACCCCCTTCACGACAAAGCCATTTTGCTGAGCCAGTCACACGAGCCAACTCGGTCCAGGATAGTGCCAAT
GCTGCTGGCCAACATCCAGGTTTTTCCTTGGGAAAAAAGGACTTGAGTGCAACTCCTTATTCCCGCTCGCCAGAA
CTTAGAGTGTCGCATAAGCTTGCAGAACGGAAAAGACGGAAGGAGATGAAGGATTTATTCGACGAACTCAGGGAC
CAATTACCGGCAGATCGGGGCATGAAAGCCAGCAAGTGGGAGATCCTGACCAAAGCGATTGACTTTGTCGTAAAT
CTGAAGCAATCTCATCAAGACATGGTACGAGAAATTGACCGCCTCCGACAGGAACTCGATATAGCTCGCGGCGGT
TCGGGTTCTATTTCCTCTTTTCAACCGCCCAATCCCCATGTTGTCTACGGGCAGAATCCCATTGTCTCTTCACAA
GGATCCCATCTACAACCACCCCTTCCCGGTCCTAGCCAATTGCCTCTACCGCGACAATCGACCCAAAATACTTAT
CCCTCAATCACATCATCACCACCGCACCCTTCGCCCAACGGAGGGTTTCATCGGCCAGATGGCACTTCGCCGTGA
Gene >AgabiH97|072800
ATGGCTCCGTCGGACGGCAGCAGCAGCGCATCGCCGGGGATGCCCAGCCGCCTCTCGCCGCTCCCCCCGCTCGAG
TATCTCCAGAACCAGCGGCGCGGCTCCATCACAGATCCCTCTCTCCACGCCGCCCCGCCCTTCCGACACGACCCC
GACTCTGACATGCCGCCCGACGCCGACCCCAAGTCGCCCTACCTCACCGCCGACCACAACCACCACCACCACCAC
CACCATCATCACCCCGGAAACACCTCGCCCCATCTTCGCAATCTCCTCCGCTCCCCGTCCCTCGACCTCCCACAT
CCTCACCGCCCCCTCGACGCCCCCGATCCCCCCTCCCGCTCTAAATTAGGCTACCAAGGTTTGTTCTATTCTTGA
CCGCTCTCCATCACCCTCATGCCCCCAACCACAGGCAGAGATTCCATCCAGAAGCTCAACAGTGACACCGATAGA
AATGGCCTCCCCCGCACTCACATCCGTGACCCTCTTCCCTTCGACTATAACATGCGCAGACACTCCATTGCCACT
GGCCAGCATCCCCATCCCCACCCTATCCTTCCCCCGGTTGCGCATGGTATCAAGCGCAAGTTGTCCATGGAGCGT
TCCGTCTTTGCCCCCGTTGGCGAAGAGCCTGACTCACAACTAGTCGGCCCCGGCGTCCCCAGCGTCATGGAAGTG
GATCCAGAACCCCCTGCCCCCAAGCGACGGGGGTCCGCCATAGACACCCAGCGGATAGCCCAGCTCAGTCTCAAC
GACAGGCGTGGCTCCACAGACTCCCGAGGTCCATCCGTCCCTTGGTGGAATGAACGCCGCGACTCTGTTTCCAAT
CCCTCCAGCTCAGGATACAGCTACTCTGGTCGAGATTCTCCGCATGGCCGGCTCCCTACGAGCATCGCGGCTTTC
TCGTGGCCCGGTTCACAGTCTAGCGATCCCTCAACCCCAACACCGAATGGAACTGAACCCAACACACCCAACATT
CCCCGGCAGTTTGATGCAAGCCCTTCAAACACGATCCCACCATTGAATTACCCACCCGATCGACGTATGTCTGTA
CCAGATACCCTCATCTCCCCCAGCGGCGCATACGAAAATTTCCGATCCCGATCACGACCCCCTTCACGACAAAGC
CATTTTGCTGAGCCAGTCACACGAGCCAACTCGGTCCAGGATAGTGCCAATGCTGCTGGCCAACATCCAGGTTTT
TCCTTGGGAAAAAAGGACTTGAGTGCAACTCCTTATTCCCGCTCGCCAGAACTTAGAGTGTCGCATAAGCTTGCA
GAACGGAAAAGACGGAAGGAGATGAAGGATTTATTCGACGAACTCAGGGACCAATTACCGGCAGATCGGGGCATG
AAAGCCAGCAAGTGGGAGATCCTGACCAAAGGTTCGGCTCACAGATTCCAGCTTTTTATCCTGAGGCACTCATCA
CTCATCTAGCGATTGACTTTGTCGTAAATCTGAAGCAATCTCATCAAGACATGGTACGAGAAATTGACCGCCTCC
GACAGGAACTCGATATAGCTCGCGGCGGTTCGGGTTCTATTTCCTCTTTTCAACCGCCCAATCCCCATGTTGTCT
ACGGGCAGAATCCCATTGTCTCTTCACAAGGATCCCATCTACAACCACCCCTTCCCGGTCCTAGCCAATTGCCTC
TACCGCGACAATCGACCCAAAATACTTATCCCTCAATCACATCATCACCACCGCACCCTTCGCCCAACGGAGGGT
TTCATCGGCCAGATGGCACTTCGCCGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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