© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|072610 |
| Gene name | |
| Location | scaffold_4:1760394..1762421 |
| Strand | - |
| Gene length (bp) | 2027 |
| Transcript length (bp) | 1977 |
| Coding sequence length (bp) | 1977 |
| Protein length (aa) | 659 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00018 | SH3_1 | SH3 domain | 8.9E-08 | 48 | 89 |
| PF00018 | SH3_1 | SH3 domain | 5.1E-11 | 128 | 176 |
| PF14604 | SH3_9 | Variant SH3 domain | 6.4E-08 | 43 | 91 |
| PF14604 | SH3_9 | Variant SH3 domain | 2.9E-07 | 130 | 180 |
| PF07653 | SH3_2 | Variant SH3 domain | 3.0E-09 | 40 | 95 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40996|SCD2_SCHPO | Protein scd2/ral3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=scd2 PE=3 SV=1 | 26 | 403 | 2.0E-73 |
| sp|P29366|BEM1_YEAST | Bud emergence protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BEM1 PE=1 SV=1 | 33 | 377 | 2.0E-57 |
| sp|A1X283|SPD2B_HUMAN | SH3 and PX domain-containing protein 2B OS=Homo sapiens GN=SH3PXD2B PE=1 SV=3 | 313 | 419 | 9.0E-08 |
| sp|O35413|SRBS2_RAT | Sorbin and SH3 domain-containing protein 2 OS=Rattus norvegicus GN=Sorbs2 PE=1 SV=2 | 41 | 181 | 3.0E-07 |
| sp|A2AAY5|SPD2B_MOUSE | SH3 and PX domain-containing protein 2B OS=Mus musculus GN=Sh3pxd2b PE=1 SV=1 | 313 | 424 | 3.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40996|SCD2_SCHPO | Protein scd2/ral3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=scd2 PE=3 SV=1 | 26 | 403 | 2.0E-73 |
| sp|P29366|BEM1_YEAST | Bud emergence protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BEM1 PE=1 SV=1 | 33 | 377 | 2.0E-57 |
| sp|A1X283|SPD2B_HUMAN | SH3 and PX domain-containing protein 2B OS=Homo sapiens GN=SH3PXD2B PE=1 SV=3 | 313 | 419 | 9.0E-08 |
| sp|O35413|SRBS2_RAT | Sorbin and SH3 domain-containing protein 2 OS=Rattus norvegicus GN=Sorbs2 PE=1 SV=2 | 41 | 181 | 3.0E-07 |
| sp|A2AAY5|SPD2B_MOUSE | SH3 and PX domain-containing protein 2B OS=Mus musculus GN=Sh3pxd2b PE=1 SV=1 | 313 | 424 | 3.0E-07 |
| sp|Q3UTJ2|SRBS2_MOUSE | Sorbin and SH3 domain-containing protein 2 OS=Mus musculus GN=Sorbs2 PE=1 SV=2 | 41 | 181 | 3.0E-07 |
| sp|Q9R1Z8|VINEX_MOUSE | Vinexin OS=Mus musculus GN=Sorbs3 PE=1 SV=1 | 37 | 182 | 3.0E-07 |
| sp|Q1LYG0|SPD2A_DANRE | SH3 and PX domain-containing protein 2A OS=Danio rerio GN=sh3pxd2a PE=3 SV=2 | 312 | 402 | 5.0E-07 |
| sp|O94875|SRBS2_HUMAN | Sorbin and SH3 domain-containing protein 2 OS=Homo sapiens GN=SORBS2 PE=1 SV=3 | 41 | 181 | 5.0E-07 |
| sp|O60504|VINEX_HUMAN | Vinexin OS=Homo sapiens GN=SORBS3 PE=1 SV=2 | 37 | 181 | 2.0E-06 |
| sp|Q8BZT2|SH3R2_MOUSE | Putative E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus GN=Sh3rf2 PE=1 SV=2 | 41 | 180 | 3.0E-06 |
| sp|Q498M5|SH3R2_RAT | Putative E3 ubiquitin-protein ligase SH3RF2 OS=Rattus norvegicus GN=Sh3rf2 PE=1 SV=1 | 41 | 180 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|072610 MKSLRKSLNGSKDPAKLHISTPLPPVSKPPSAISPPQKVIRALSTHRSQAPQELSFSKGDFFYVISDARDQDQWY EAHNPVSGARGLVPRNMFEEFGKNTSIRASQLGAPPLHPPPPPSAKSQVFYAIVQHDFQAERQDELEAKRGDAIT VVAQSNREWFVAKPIGRLGRPGLIPVSFVEIHDPATGKPIIDVEGLMDRGELPKVEDWKKAMLTYKQNSIPLGVI DTPSKSSLSDSPYSPQATSPTTSSHTYHNAVPPRPPTPELLPEGILLSADVVSFHYEMDEYWFRIDALYQPYPES ESSSPPPAKQLILFRVYNDFYDFQVALLETFPREGGRHPPHPRILPFMPGPAETVDDILTATRRLELDAYVHDLC QLSNNGAHYVLEHRIVREFLSLKPGDVEQSVGQAFDTGSSVTQDDNTVVNDVYDRELAQKMGGLRTDDERSDGSD YGEERYNPSIKAPSYGERVSYAWKDQRPPLEAGTQMFADSPGHERSNSSASFHSRSYSPHPERTHSSQAARNGNH SHTSLRYENSYPPGSSTPQSVASHHSSQKSSRSRSQSNATSNFNNPSISAANPQTAFVKIKIFDRVADDLIAIRV HPKVTHLELMEKVQGRLGGEVSILRYRDSLTNTFVGLDNDVDLRVWMEGTGKHVLYAD* |
| Coding | >AgabiH97|072610 ATGAAGTCTCTCCGGAAATCCCTCAACGGGTCCAAAGACCCCGCCAAACTCCATATCTCGACTCCCCTGCCCCCC GTCTCCAAACCCCCCTCCGCCATCTCCCCGCCCCAGAAGGTCATCCGTGCTCTCAGCACACACCGCTCCCAGGCT CCCCAGGAACTCTCCTTCTCCAAGGGGGACTTTTTCTACGTCATCAGCGATGCCCGTGACCAAGACCAGTGGTAC GAAGCACACAACCCGGTCAGTGGCGCAAGAGGCCTCGTCCCCCGCAACATGTTCGAAGAGTTCGGCAAAAATACT TCGATCCGCGCTTCCCAACTCGGAGCTCCTCCTCTCCATCCCCCTCCTCCTCCATCAGCAAAGTCACAAGTCTTT TATGCCATCGTACAACATGACTTCCAGGCAGAGCGCCAAGATGAATTGGAAGCAAAGCGCGGTGATGCTATCACA GTCGTCGCTCAATCCAATCGCGAGTGGTTCGTCGCAAAGCCCATAGGCCGTCTTGGTCGACCCGGTCTCATCCCC GTCTCCTTTGTTGAAATACACGACCCCGCCACAGGCAAGCCCATCATAGATGTCGAAGGTTTGATGGACAGGGGA GAGTTGCCCAAAGTAGAGGACTGGAAAAAAGCCATGCTCACTTACAAGCAGAACAGCATCCCTCTTGGCGTTATC GATACCCCCAGCAAATCTTCACTCTCTGATAGCCCTTACAGCCCCCAAGCGACATCCCCTACCACAAGCTCCCAT ACATACCACAACGCCGTTCCTCCTCGCCCCCCAACCCCAGAACTTCTCCCTGAAGGTATCCTTCTTTCCGCTGAT GTCGTCTCTTTCCATTACGAAATGGATGAATACTGGTTCCGAATCGATGCCCTCTATCAACCCTACCCGGAATCC GAATCTTCTTCACCTCCCCCAGCTAAGCAACTCATCTTGTTCCGAGTTTACAATGACTTCTACGACTTCCAGGTC GCTCTTCTCGAAACTTTCCCCCGTGAAGGCGGACGGCACCCTCCTCATCCGCGGATACTTCCCTTCATGCCTGGT CCGGCTGAAACAGTAGATGACATACTAACCGCAACGAGAAGATTAGAGTTGGATGCCTATGTTCATGATTTGTGC CAACTCTCGAACAATGGAGCTCACTATGTCCTCGAACATCGAATAGTCCGGGAGTTTTTATCCCTCAAACCTGGC GACGTAGAACAGTCTGTTGGACAGGCCTTTGATACGGGATCCAGCGTTACACAAGACGACAACACAGTCGTAAAT GATGTTTATGACCGGGAGCTTGCGCAGAAAATGGGGGGACTACGAACAGACGATGAGAGGAGTGATGGCTCAGAC TATGGAGAAGAACGGTACAACCCTTCCATCAAAGCACCCTCATACGGAGAACGTGTCTCCTATGCTTGGAAGGAT CAGCGGCCACCTCTTGAGGCTGGTACTCAAATGTTTGCCGACAGTCCCGGTCATGAACGATCAAACTCGTCCGCT TCATTCCACTCTCGATCATACTCGCCGCACCCGGAACGAACTCACTCATCCCAAGCAGCTCGCAATGGCAATCAT TCACATACTTCGTTGCGATATGAAAATAGCTACCCACCCGGCTCTTCGACACCACAGTCCGTAGCATCTCACCAC TCATCACAAAAATCATCCCGCTCCCGATCACAGTCTAATGCTACGTCTAACTTTAACAACCCATCAATATCCGCG GCCAACCCACAAACCGCATTTGTAAAGATTAAAATTTTCGACCGCGTAGCAGATGACCTTATTGCAATTCGTGTT CATCCCAAAGTAACTCATTTGGAGTTGATGGAAAAGGTCCAAGGTCGCCTCGGCGGCGAGGTCTCCATTCTCAGA TATCGTGATAGTCTGACCAACACTTTTGTTGGACTCGACAATGATGTTGATCTCCGGGTATGGATGGAAGGTACG GGCAAACATGTTCTATATGCAGACTGA |
| Transcript | >AgabiH97|072610 ATGAAGTCTCTCCGGAAATCCCTCAACGGGTCCAAAGACCCCGCCAAACTCCATATCTCGACTCCCCTGCCCCCC GTCTCCAAACCCCCCTCCGCCATCTCCCCGCCCCAGAAGGTCATCCGTGCTCTCAGCACACACCGCTCCCAGGCT CCCCAGGAACTCTCCTTCTCCAAGGGGGACTTTTTCTACGTCATCAGCGATGCCCGTGACCAAGACCAGTGGTAC GAAGCACACAACCCGGTCAGTGGCGCAAGAGGCCTCGTCCCCCGCAACATGTTCGAAGAGTTCGGCAAAAATACT TCGATCCGCGCTTCCCAACTCGGAGCTCCTCCTCTCCATCCCCCTCCTCCTCCATCAGCAAAGTCACAAGTCTTT TATGCCATCGTACAACATGACTTCCAGGCAGAGCGCCAAGATGAATTGGAAGCAAAGCGCGGTGATGCTATCACA GTCGTCGCTCAATCCAATCGCGAGTGGTTCGTCGCAAAGCCCATAGGCCGTCTTGGTCGACCCGGTCTCATCCCC GTCTCCTTTGTTGAAATACACGACCCCGCCACAGGCAAGCCCATCATAGATGTCGAAGGTTTGATGGACAGGGGA GAGTTGCCCAAAGTAGAGGACTGGAAAAAAGCCATGCTCACTTACAAGCAGAACAGCATCCCTCTTGGCGTTATC GATACCCCCAGCAAATCTTCACTCTCTGATAGCCCTTACAGCCCCCAAGCGACATCCCCTACCACAAGCTCCCAT ACATACCACAACGCCGTTCCTCCTCGCCCCCCAACCCCAGAACTTCTCCCTGAAGGTATCCTTCTTTCCGCTGAT GTCGTCTCTTTCCATTACGAAATGGATGAATACTGGTTCCGAATCGATGCCCTCTATCAACCCTACCCGGAATCC GAATCTTCTTCACCTCCCCCAGCTAAGCAACTCATCTTGTTCCGAGTTTACAATGACTTCTACGACTTCCAGGTC GCTCTTCTCGAAACTTTCCCCCGTGAAGGCGGACGGCACCCTCCTCATCCGCGGATACTTCCCTTCATGCCTGGT CCGGCTGAAACAGTAGATGACATACTAACCGCAACGAGAAGATTAGAGTTGGATGCCTATGTTCATGATTTGTGC CAACTCTCGAACAATGGAGCTCACTATGTCCTCGAACATCGAATAGTCCGGGAGTTTTTATCCCTCAAACCTGGC GACGTAGAACAGTCTGTTGGACAGGCCTTTGATACGGGATCCAGCGTTACACAAGACGACAACACAGTCGTAAAT GATGTTTATGACCGGGAGCTTGCGCAGAAAATGGGGGGACTACGAACAGACGATGAGAGGAGTGATGGCTCAGAC TATGGAGAAGAACGGTACAACCCTTCCATCAAAGCACCCTCATACGGAGAACGTGTCTCCTATGCTTGGAAGGAT CAGCGGCCACCTCTTGAGGCTGGTACTCAAATGTTTGCCGACAGTCCCGGTCATGAACGATCAAACTCGTCCGCT TCATTCCACTCTCGATCATACTCGCCGCACCCGGAACGAACTCACTCATCCCAAGCAGCTCGCAATGGCAATCAT TCACATACTTCGTTGCGATATGAAAATAGCTACCCACCCGGCTCTTCGACACCACAGTCCGTAGCATCTCACCAC TCATCACAAAAATCATCCCGCTCCCGATCACAGTCTAATGCTACGTCTAACTTTAACAACCCATCAATATCCGCG GCCAACCCACAAACCGCATTTGTAAAGATTAAAATTTTCGACCGCGTAGCAGATGACCTTATTGCAATTCGTGTT CATCCCAAAGTAACTCATTTGGAGTTGATGGAAAAGGTCCAAGGTCGCCTCGGCGGCGAGGTCTCCATTCTCAGA TATCGTGATAGTCTGACCAACACTTTTGTTGGACTCGACAATGATGTTGATCTCCGGGTATGGATGGAAGGTACG GGCAAACATGTTCTATATGCAGACTGA |
| Gene | >AgabiH97|072610 ATGAAGTCTCTCCGGAAATCCCTCAACGGGTCCAAAGACCCCGCCAAACTCCATATCTCGACTCCCCTGCCCCCC GTCTCCAAACCCCCCTCCGCCATCTCCCCGCCCCAGAAGGTCATCCGTGCTCTCAGCACACACCGCTCCCAGGCT CCCCAGGAACTCTCCTTCTCCAAGGGGGACTTTTTCTACGTCATCAGCGATGCCCGTGACCAAGACCAGTGGTAC GAAGCACACAACCCGGTCAGTGGCGCAAGAGGCCTCGTCCCCCGCAACATGTTCGAAGAGTTCGGCAAAAATACT TCGTGCGGCACTCGCTCATCCTCGGAAAATATCTCTGACTTATCTCTATCAGGATCCGCGCTTCCCAACTCGGAG CTCCTCCTCTCCATCCCCCTCCTCCTCCATCAGCAAAGTCACAAGTCTTTTATGCCATCGTACAACATGACTTCC AGGCAGAGCGCCAAGATGAATTGGAAGCAAAGCGCGGTGATGCTATCACAGTCGTCGCTCAATCCAATCGCGAGT GGTTCGTCGCAAAGCCCATAGGCCGTCTTGGTCGACCCGGTCTCATCCCCGTCTCCTTTGTTGAAATACACGACC CCGCCACAGGCAAGCCCATCATAGATGTCGAAGGTTTGATGGACAGGGGAGAGTTGCCCAAAGTAGAGGACTGGA AAAAAGCCATGCTCACTTACAAGCAGAACAGCATCCCTCTTGGCGTTATCGATACCCCCAGCAAATCTTCACTCT CTGATAGCCCTTACAGCCCCCAAGCGACATCCCCTACCACAAGCTCCCATACATACCACAACGCCGTTCCTCCTC GCCCCCCAACCCCAGAACTTCTCCCTGAAGGTATCCTTCTTTCCGCTGATGTCGTCTCTTTCCATTACGAAATGG ATGAATACTGGTTCCGAATCGATGCCCTCTATCAACCCTACCCGGAATCCGAATCTTCTTCACCTCCCCCAGCTA AGCAACTCATCTTGTTCCGAGTTTACAATGACTTCTACGACTTCCAGGTCGCTCTTCTCGAAACTTTCCCCCGTG AAGGCGGACGGCACCCTCCTCATCCGCGGATACTTCCCTTCATGCCTGGTCCGGCTGAAACAGTAGATGACATAC TAACCGCAACGAGAAGATTAGAGTTGGATGCCTATGTTCATGATTTGTGCCAACTCTCGAACAATGGAGCTCACT ATGTCCTCGAACATCGAATAGTCCGGGAGTTTTTATCCCTCAAACCTGGCGACGTAGAACAGTCTGTTGGACAGG CCTTTGATACGGGATCCAGCGTTACACAAGACGACAACACAGTCGTAAATGATGTTTATGACCGGGAGCTTGCGC AGAAAATGGGGGGACTACGAACAGACGATGAGAGGAGTGATGGCTCAGACTATGGAGAAGAACGGTACAACCCTT CCATCAAAGCACCCTCATACGGAGAACGTGTCTCCTATGCTTGGAAGGATCAGCGGCCACCTCTTGAGGCTGGTA CTCAAATGTTTGCCGACAGTCCCGGTCATGAACGATCAAACTCGTCCGCTTCATTCCACTCTCGATCATACTCGC CGCACCCGGAACGAACTCACTCATCCCAAGCAGCTCGCAATGGCAATCATTCACATACTTCGTTGCGATATGAAA ATAGCTACCCACCCGGCTCTTCGACACCACAGTCCGTAGCATCTCACCACTCATCACAAAAATCATCCCGCTCCC GATCACAGTCTAATGCTACGTCTAACTTTAACAACCCATCAATATCCGCGGCCAACCCACAAACCGCATTTGTAA AGATTAAAATTTTCGACCGCGTAGCAGATGACCTTATTGCAATTCGTGTTCATCCCAAAGTAACTCATTTGGAGT TGATGGAAAAGGTCCAAGGTCGCCTCGGCGGCGAGGTCTCCATTCTCAGATATCGTGATAGTCTGACCAACACTT TTGTTGGACTCGACAATGATGTTGATCTCCGGGTATGGATGGAAGGTACGGGCAAACATGTTCTATATGCAGACT GA |