© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|072270 |
| Gene name | |
| Location | scaffold_4:1689020..1690580 |
| Strand | - |
| Gene length (bp) | 1560 |
| Transcript length (bp) | 1500 |
| Coding sequence length (bp) | 1500 |
| Protein length (aa) | 500 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11786 | Aft1_HRA | Aft1 HRA domain | 1.2E-22 | 104 | 190 |
| PF00170 | bZIP_1 | bZIP transcription factor | 3.0E-10 | 377 | 433 |
| PF07716 | bZIP_2 | Basic region leucine zipper | 1.6E-05 | 379 | 432 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P52890|ATF1_SCHPO | Transcription factor atf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atf1 PE=1 SV=1 | 372 | 469 | 1.0E-20 |
| sp|Q00969|ATF2_RAT | Cyclic AMP-dependent transcription factor ATF-2 OS=Rattus norvegicus GN=Atf2 PE=1 SV=2 | 374 | 445 | 1.0E-10 |
| sp|P16951|ATF2_MOUSE | Cyclic AMP-dependent transcription factor ATF-2 OS=Mus musculus GN=Atf2 PE=1 SV=2 | 374 | 445 | 1.0E-10 |
| sp|P15336|ATF2_HUMAN | Cyclic AMP-dependent transcription factor ATF-2 OS=Homo sapiens GN=ATF2 PE=1 SV=4 | 377 | 445 | 2.0E-10 |
| sp|Q8K1L0|CREB5_MOUSE | Cyclic AMP-responsive element-binding protein 5 OS=Mus musculus GN=Creb5 PE=2 SV=3 | 363 | 445 | 3.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P52890|ATF1_SCHPO | Transcription factor atf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atf1 PE=1 SV=1 | 372 | 469 | 1.0E-20 |
| sp|Q00969|ATF2_RAT | Cyclic AMP-dependent transcription factor ATF-2 OS=Rattus norvegicus GN=Atf2 PE=1 SV=2 | 374 | 445 | 1.0E-10 |
| sp|P16951|ATF2_MOUSE | Cyclic AMP-dependent transcription factor ATF-2 OS=Mus musculus GN=Atf2 PE=1 SV=2 | 374 | 445 | 1.0E-10 |
| sp|P15336|ATF2_HUMAN | Cyclic AMP-dependent transcription factor ATF-2 OS=Homo sapiens GN=ATF2 PE=1 SV=4 | 377 | 445 | 2.0E-10 |
| sp|Q8K1L0|CREB5_MOUSE | Cyclic AMP-responsive element-binding protein 5 OS=Mus musculus GN=Creb5 PE=2 SV=3 | 363 | 445 | 3.0E-10 |
| sp|O93602|ATF2_CHICK | Cyclic AMP-dependent transcription factor ATF-2 OS=Gallus gallus GN=ATF2 PE=2 SV=1 | 374 | 445 | 3.0E-10 |
| sp|Q02930|CREB5_HUMAN | Cyclic AMP-responsive element-binding protein 5 OS=Homo sapiens GN=CREB5 PE=1 SV=3 | 363 | 445 | 4.0E-10 |
| sp|Q8R0S1|ATF7_MOUSE | Cyclic AMP-dependent transcription factor ATF-7 OS=Mus musculus GN=Atf7 PE=2 SV=1 | 374 | 445 | 1.0E-09 |
| sp|Q5R9C9|ATF7_PONAB | Cyclic AMP-dependent transcription factor ATF-7 OS=Pongo abelii GN=ATF7 PE=2 SV=1 | 374 | 445 | 1.0E-09 |
| sp|P17544|ATF7_HUMAN | Cyclic AMP-dependent transcription factor ATF-7 OS=Homo sapiens GN=ATF7 PE=1 SV=2 | 374 | 445 | 1.0E-09 |
| sp|Q59VR1|SKO1_CANAL | Transcriptional regulator SKO1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SKO1 PE=1 SV=1 | 375 | 433 | 8.0E-08 |
| sp|Q09771|ATF31_SCHPO | Transcription factor atf31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atf31 PE=3 SV=1 | 386 | 446 | 2.0E-07 |
| sp|P78962|ATF21_SCHPO | Transcription factor atf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atf21 PE=3 SV=1 | 374 | 433 | 1.0E-06 |
| sp|Q09926|PCR1_SCHPO | Transcription factor pcr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pcr1 PE=1 SV=1 | 371 | 452 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003700 | DNA-binding transcription factor activity | Yes |
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0050789 | regulation of biological process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| bZIP |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|072270 MSPKSPSRSPPPDPSRPQPQPRHTRTDFNLEHNPFEQSFRSSSNVRNSSPPRDSAQPAADSNDAPPSDPERSKSR SSDDPATHRSQSPRPVLPPLASISSPADQSYPWGYNHASVNSLRSGPLSPAMLTGPQQQSDQPQHMPFDPATFRS GLTPRTGLTPRTGLTPGTGLTPLVAGSVPYPASPNTATLMAIMNNSGVSNNGPTITPNTLNAIAGALNSTQSTSN SYPPHQQDPNNPALNATSTAANGLFLLSQAHQELTKREQAQARAGGNPPPNNVNGSAVQQNGKRGNGLKRKSHDN ASPSPSAVSFSQPAPNKPGKRTRSAAVPRRKESERGFSEGIEDDDDNDDMDDMDMEEMDNSHPPPPRKGPKKPET EEEKRRNFLERNRQAALKCRQRKKAWLAQLQAKVEYLSNENERLTSALVSSREEISRLSALVGGAGVVPIGVGVN GVGVNNVGVSGPGVQPVSMNVSLPGKSGGPPVASVGSAAGGRSGSGYGY* |
| Coding | >AgabiH97|072270 ATGTCTCCGAAAAGCCCATCCAGGTCTCCGCCCCCGGACCCTTCTCGCCCCCAGCCCCAGCCCCGCCACACCCGC ACCGACTTCAACCTCGAGCACAACCCCTTTGAGCAGTCTTTTCGCTCGTCTTCCAACGTCCGCAATTCGTCCCCG CCCCGCGACTCTGCCCAGCCCGCCGCCGACTCCAACGACGCACCCCCCAGCGACCCCGAGCGTTCCAAGTCCCGC TCCTCCGACGATCCCGCCACCCACCGCAGCCAGTCCCCACGCCCCGTCCTTCCCCCGCTCGCCTCCATCTCGTCC CCCGCTGACCAGTCCTATCCATGGGGCTACAATCACGCCTCCGTCAACTCCCTCCGCTCAGGGCCCCTCTCCCCT GCCATGCTCACTGGGCCCCAACAACAGAGCGATCAGCCCCAACATATGCCTTTTGACCCCGCGACCTTCCGCTCT GGCCTCACCCCCCGCACTGGCCTCACTCCCCGCACGGGTCTTACCCCCGGCACTGGCTTGACTCCTCTTGTCGCC GGTTCAGTTCCCTATCCCGCCTCCCCTAATACAGCTACCCTCATGGCTATCATGAACAATTCGGGGGTTTCCAAT AACGGCCCCACCATCACCCCTAACACCCTCAATGCCATCGCCGGTGCCCTCAACTCAACCCAATCAACATCTAAT TCATACCCTCCGCATCAGCAGGATCCAAACAATCCCGCCCTAAATGCTACAAGCACGGCTGCCAATGGCCTCTTT CTTTTATCTCAAGCACACCAAGAACTTACTAAGCGAGAACAGGCTCAAGCACGCGCCGGCGGTAACCCACCCCCC AATAATGTCAATGGTTCTGCAGTACAACAGAACGGCAAGAGGGGCAATGGCTTGAAACGCAAGTCTCATGATAAT GCCTCTCCATCACCTTCCGCCGTATCCTTTTCCCAACCAGCACCAAACAAACCTGGAAAACGGACCCGATCCGCG GCTGTACCCCGCCGAAAGGAAAGTGAACGCGGATTTTCAGAAGGCATTGAAGACGACGATGACAATGATGACATG GATGACATGGACATGGAAGAAATGGACAATTCTCATCCCCCTCCTCCCCGTAAAGGTCCGAAAAAACCTGAAACG GAGGAGGAAAAGCGGCGTAATTTCCTGGAGCGCAATAGACAAGCTGCCCTCAAATGCCGGCAACGTAAAAAGGCC TGGCTCGCACAACTCCAGGCCAAGGTTGAATACCTTAGCAATGAAAATGAGAGACTCACCTCTGCCCTCGTTTCT TCAAGAGAGGAAATATCTCGTCTCTCTGCTCTCGTTGGGGGTGCTGGTGTTGTCCCAATCGGTGTTGGCGTCAAC GGTGTTGGAGTGAACAACGTTGGTGTATCCGGTCCCGGCGTCCAACCTGTGAGCATGAACGTCAGTCTTCCAGGC AAGTCTGGTGGTCCTCCCGTCGCAAGTGTAGGCTCTGCCGCTGGTGGTCGCTCCGGTAGTGGCTATGGGTATTGA |
| Transcript | >AgabiH97|072270 ATGTCTCCGAAAAGCCCATCCAGGTCTCCGCCCCCGGACCCTTCTCGCCCCCAGCCCCAGCCCCGCCACACCCGC ACCGACTTCAACCTCGAGCACAACCCCTTTGAGCAGTCTTTTCGCTCGTCTTCCAACGTCCGCAATTCGTCCCCG CCCCGCGACTCTGCCCAGCCCGCCGCCGACTCCAACGACGCACCCCCCAGCGACCCCGAGCGTTCCAAGTCCCGC TCCTCCGACGATCCCGCCACCCACCGCAGCCAGTCCCCACGCCCCGTCCTTCCCCCGCTCGCCTCCATCTCGTCC CCCGCTGACCAGTCCTATCCATGGGGCTACAATCACGCCTCCGTCAACTCCCTCCGCTCAGGGCCCCTCTCCCCT GCCATGCTCACTGGGCCCCAACAACAGAGCGATCAGCCCCAACATATGCCTTTTGACCCCGCGACCTTCCGCTCT GGCCTCACCCCCCGCACTGGCCTCACTCCCCGCACGGGTCTTACCCCCGGCACTGGCTTGACTCCTCTTGTCGCC GGTTCAGTTCCCTATCCCGCCTCCCCTAATACAGCTACCCTCATGGCTATCATGAACAATTCGGGGGTTTCCAAT AACGGCCCCACCATCACCCCTAACACCCTCAATGCCATCGCCGGTGCCCTCAACTCAACCCAATCAACATCTAAT TCATACCCTCCGCATCAGCAGGATCCAAACAATCCCGCCCTAAATGCTACAAGCACGGCTGCCAATGGCCTCTTT CTTTTATCTCAAGCACACCAAGAACTTACTAAGCGAGAACAGGCTCAAGCACGCGCCGGCGGTAACCCACCCCCC AATAATGTCAATGGTTCTGCAGTACAACAGAACGGCAAGAGGGGCAATGGCTTGAAACGCAAGTCTCATGATAAT GCCTCTCCATCACCTTCCGCCGTATCCTTTTCCCAACCAGCACCAAACAAACCTGGAAAACGGACCCGATCCGCG GCTGTACCCCGCCGAAAGGAAAGTGAACGCGGATTTTCAGAAGGCATTGAAGACGACGATGACAATGATGACATG GATGACATGGACATGGAAGAAATGGACAATTCTCATCCCCCTCCTCCCCGTAAAGGTCCGAAAAAACCTGAAACG GAGGAGGAAAAGCGGCGTAATTTCCTGGAGCGCAATAGACAAGCTGCCCTCAAATGCCGGCAACGTAAAAAGGCC TGGCTCGCACAACTCCAGGCCAAGGTTGAATACCTTAGCAATGAAAATGAGAGACTCACCTCTGCCCTCGTTTCT TCAAGAGAGGAAATATCTCGTCTCTCTGCTCTCGTTGGGGGTGCTGGTGTTGTCCCAATCGGTGTTGGCGTCAAC GGTGTTGGAGTGAACAACGTTGGTGTATCCGGTCCCGGCGTCCAACCTGTGAGCATGAACGTCAGTCTTCCAGGC AAGTCTGGTGGTCCTCCCGTCGCAAGTGTAGGCTCTGCCGCTGGTGGTCGCTCCGGTAGTGGCTATGGGTATTGA |
| Gene | >AgabiH97|072270 ATGTCTCCGAAAAGCCCATCCAGGTCTCCGCCCCCGGACCCTTCTCGCCCCCAGCCCCAGCCCCGCCACACCCGC ACCGACTTCAACCTCGAGCACAACCCCTTTGAGCAGTCTTTTCGCTCGTCTTCCAACGTCCGCAATTCGTCCCCG CCCCGCGACTCTGCCCAGCCCGCCGCCGACTCCAACGACGCACCCCCCAGCGACCCCGAGCGTTCCAAGTCCCGC TCCTCCGACGATCCCGCCACCCACCGCAGCCAGTCCCCACGCCCCGTCCTTCCCCCGCTCGCCTCCATCTCGTCC CCCGCTGACCAGTCCTATCCATGGGGCTACAATCACGCCTCCGTCAACTCCCTCCGCTCAGGGCCCCTCTCCCCT GCCATGCTCACTGGGCCCCAACAACAGAGCGATCAGCCCCAACATATGCCTTTTGACCCCGCGACCTTCCGCTCT GGCCTCACCCCCCGCACTGGCCTCACTCCCCGCACGGGTCTTACCCCCGGCACTGGCTTGACTCCTCTTGTCGCC GGTTCAGTTCCCTATCCCGCCTCCCCTAATACAGCTACCCTCATGGCTATCATGAACAATTCGGGGGTTTCCAAT AACGGCCCCACCATCACCCCTAACACCCTCAATGCCATCGCCGGTGCCCTCAACTCAACCCAATCAACATCTAAT TCATACCCTCCGCATCAGCAGGATCCAAACAATCCCGCCCTAAATGCTACAAGCACGGCTGCCAATGGCCTCTTT CTTTTATCTCAAGCACACCAAGAACTTACTAAGCGAGAACAGGCTCAAGCACGCGCCGGCGGTAACCCACCCCCC AATAATGTCAATGGTTCTGCAGTACAACAGAACGGCAAGAGGGGCAATGGCTTGAAACGCAAGTCTCATGATAAT GCCTCTCCATCACCTTCCGCCGTATCCTTTTCCCAACCAGCACCAAACAAACCTGGAAAACGGACCCGATCCGCG GCTGTACCCCGCCGAAAGGAAAGTGAACGCGGATTTTCAGAAGGCATTGAAGACGACGATGACAATGATGACATG GATGACATGGACATGGAAGAAATGGACAATTCTCATCCCCCTCCTCCCCGTAAAGGTCCGAAAAAACCTGAAACG GAGGAGGAAAAGCGGCGTAATTTCCTGGAGCGCAATAGACAAGGTGAGGTTGATTCCTCTATATCACCGCCCTCA TCGATAGCTTATTGATTATCCACATCAGCTGCCCTCAAATGCCGGCAACGTAAAAAGGCCTGGCTCGCACAACTC CAGGCCAAGGTTGAATACCTTAGCAATGAAAATGAGAGACTCACCTCTGCCCTCGTTTCTTCAAGAGAGGAAATA TCTCGTCTCTCTGCTCTCGTTGGGGGTGCTGGTGTTGTCCCAATCGGTGTTGGCGTCAACGGTGTTGGAGTGAAC AACGTTGGTGTATCCGGTCCCGGCGTCCAACCTGTGAGCATGAACGTCAGTCTTCCAGGCAAGTCTGGTGGTCCT CCCGTCGCAAGTGTAGGCTCTGCCGCTGGTGGTCGCTCCGGTAGTGGCTATGGGTATTGA |